Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g00661 Brassica carinata HOM05D000067 ORTHO05D038180 6.7e-34 146.7 72 100.0
A08p14720 Brassica napus HOM05D000067 ORTHO05D000097 4.8e-24 114.0 64 87.5
BraA08t33458Z Brassica rapa HOM05D000067 ORTHO05D000097 4.8e-24 114.0 64 87.5
A08p14870 Brassica napus HOM05D000067 ORTHO05D000097 1.9e-17 92.0 64 70.3
BraA08t33470Z Brassica rapa HOM05D000067 ORTHO05D000097 1.9e-17 92.0 64 70.3
Thhalv10027515m.g Eutrema salsugineum HOM05D000067 ORTHO05D000097 6.9e-15 83.6 64 64.1
CARHR227060 Cardamine hirsuta HOM05D000067 ORTHO05D000097 9.0e-15 83.2 64 62.5
AT4G20200 Arabidopsis thaliana HOM05D000067 ORTHO05D000097 1.0e-13 79.7 58 67.2
AT4G20230 Arabidopsis thaliana HOM05D000067 ORTHO05D000097 2.2e-13 78.6 64 57.8
BcaNung03493 Brassica carinata HOM05D000067 ORTHO05D000097 6.5e-13 77.0 64 57.8
BcaNung03495 Brassica carinata HOM05D000067 ORTHO05D000097 6.5e-13 77.0 64 57.8
C07p50770 Brassica napus HOM05D000067 ORTHO05D000097 6.5e-13 77.0 64 57.8
BolC7t45578H Brassica oleracea HOM05D000067 ORTHO05D000097 6.5e-13 77.0 64 57.8
Carub.0001s3796 Capsella rubella HOM05D000067 ORTHO05D000097 6.5e-13 77.0 58 63.8
CARHR227040 Cardamine hirsuta HOM05D000067 ORTHO05D000097 6.5e-13 77.0 64 60.9
BcaB03g11634 Brassica carinata HOM05D000067 ORTHO05D000097 1.1e-12 76.3 64 57.8
C03p82520 Brassica napus HOM05D000067 ORTHO05D000097 1.1e-12 76.3 64 56.2
BolC3t20502H Brassica oleracea HOM05D000067 ORTHO05D000097 1.1e-12 76.3 64 56.2
CARHR227020 Cardamine hirsuta HOM05D000067 ORTHO05D000097 1.1e-12 76.3 58 60.3
AT1G48800 Arabidopsis thaliana HOM05D000067 ORTHO05D000097 1.4e-12 75.9 64 56.2
Carub.0007s2094 Capsella rubella HOM05D000067 ORTHO05D000097 1.4e-12 75.9 64 53.1
A03p52340 Brassica napus HOM05D000067 ORTHO05D000097 1.9e-12 75.5 64 56.2
A08p14460 Brassica napus HOM05D000067 ORTHO05D000097 1.9e-12 75.5 64 56.2
BraA08t33435Z Brassica rapa HOM05D000067 ORTHO05D000097 1.9e-12 75.5 64 56.2
AL1G55520 Arabidopsis lyrata HOM05D000067 ORTHO05D000097 2.5e-12 75.1 64 54.7
BcaC01g00624 Brassica carinata HOM05D000067 ORTHO05D000097 2.5e-12 75.1 64 56.2
BcaB03g11635 Brassica carinata HOM05D000067 ORTHO05D000097 3.2e-12 74.7 64 56.2
BcaB03g11636 Brassica carinata HOM05D000067 ORTHO05D000097 3.2e-12 74.7 64 56.2
A09p19050 Brassica napus HOM05D005293 ORTHO05D006764 5.5e-12 73.9 62 53.2
BraA09t37522Z Brassica rapa HOM05D000067 ORTHO05D000097 5.5e-12 73.9 62 53.2
CARHR227030 Cardamine hirsuta HOM05D000067 ORTHO05D000097 5.5e-12 73.9 64 51.6
BcaC04g22066 Brassica carinata HOM05D000067 ORTHO05D000097 9.4e-12 73.2 62 51.6
C09p23880 Brassica napus HOM05D005293 ORTHO05D006764 9.4e-12 73.2 62 51.6
AT3G29190 Arabidopsis thaliana HOM05D000067 ORTHO05D000097 1.2e-11 72.8 58 60.3
Carub.0006s2747 Capsella rubella HOM05D000067 ORTHO05D000097 1.6e-11 72.4 46 71.7
Thhalv10012075m.g Eutrema salsugineum HOM05D000067 ORTHO05D000097 1.6e-11 72.4 55 61.8
Aa31LG6G2640 Aethionema arabicum HOM05D000067 ORTHO05D000097 2.1e-11 72.0 59 61.0
C03p82550 Brassica napus HOM05D000067 ORTHO05D000097 2.7e-11 71.6 64 54.7
Aa31sc99G10 Aethionema arabicum HOM05D000067 ORTHO05D000097 4.6e-11 70.9 59 52.5
AT1G48820 Arabidopsis thaliana HOM05D000067 ORTHO05D000097 4.6e-11 70.9 58 58.6
Carub.0001s3795 Capsella rubella HOM05D000067 ORTHO05D000097 4.6e-11 70.9 64 51.6
BcaB07g30887 Brassica carinata HOM05D000067 ORTHO05D000097 6.1e-11 70.5 58 55.2
BolC3t20499H Brassica oleracea HOM05D000067 ORTHO05D000097 6.1e-11 70.5 64 53.1
Sp7g14110 Schrenkiella parvula HOM05D000067 ORTHO05D000097 6.1e-11 70.5 59 59.3
CARHR038820 Cardamine hirsuta HOM05D000067 ORTHO05D000097 7.9e-11 70.1 58 56.9
CARHR038780 Cardamine hirsuta HOM05D000067 ORTHO05D000097 1.4e-10 69.3 64 48.4
Aa31LG6G9830 Aethionema arabicum HOM05D000067 ORTHO05D000097 1.8e-10 68.9 64 50.0
Aa31sc1125G20 Aethionema arabicum HOM05D000067 ORTHO05D038180 2.3e-10 68.6 58 55.2
AL1G55550 Arabidopsis lyrata HOM05D000067 ORTHO05D000097 2.3e-10 68.6 47 66.0
A09p21750 Brassica napus HOM05D000067 ORTHO05D000097 3.0e-10 68.2 58 50.0
BraA09t37777Z Brassica rapa HOM05D000067 ORTHO05D000097 3.0e-10 68.2 58 50.0
Aa31LG7G11160 Aethionema arabicum HOM05D000067 ORTHO05D000097 3.9e-10 67.8 59 55.9
Carub.0007s2093 Capsella rubella HOM05D000067 ORTHO05D000097 3.9e-10 67.8 59 57.6
BcaC06g30647 Brassica carinata HOM05D000067 ORTHO05D000097 5.1e-10 67.4 59 54.2
BcaNung03715 Brassica carinata HOM05D000067 ORTHO05D000097 6.7e-10 67.0 59 57.6
C09p27850 Brassica napus HOM05D000067 ORTHO05D000097 6.7e-10 67.0 58 51.7
BolC9t55649H Brassica oleracea HOM05D000067 ORTHO05D000097 6.7e-10 67.0 58 51.7
BcaC08g45202 Brassica carinata HOM05D000067 ORTHO05D000097 8.8e-10 66.6 58 50.0
BcaC09g51329 Brassica carinata HOM05D000067 ORTHO05D000097 8.8e-10 66.6 59 57.6
A01p11950 Brassica napus HOM05D000067 ORTHO05D000097 8.8e-10 66.6 59 57.6
C01p14200 Brassica napus HOM05D000067 ORTHO05D000097 8.8e-10 66.6 59 57.6
BraA01t01137Z Brassica rapa HOM05D000067 ORTHO05D000097 8.8e-10 66.6 59 57.6
CARHR038790 Cardamine hirsuta HOM05D000067 ORTHO05D000097 1.5e-09 65.9 64 50.0
CARHR089280 Cardamine hirsuta HOM05D000067 ORTHO05D000097 1.5e-09 65.9 64 50.0
Aa31LG10G11660 Aethionema arabicum HOM05D000067 ORTHO05D000097 2.0e-09 65.5 52 57.7
Aa31LG6G9910 Aethionema arabicum HOM05D000067 ORTHO05D000097 2.0e-09 65.5 65 49.2
BcaB07g30514 Brassica carinata HOM05D000067 ORTHO05D000097 2.0e-09 65.5 64 43.8
Aa31LG6G2620 Aethionema arabicum HOM05D000067 ORTHO05D000097 2.5e-09 65.1 62 48.4
BcaC04g18675 Brassica carinata HOM05D000067 ORTHO05D000097 2.5e-09 65.1 64 45.3
C06p28280 Brassica napus HOM05D000067 ORTHO05D000097 2.5e-09 65.1 58 50.0
BolC6t37998H Brassica oleracea HOM05D000067 ORTHO05D000097 2.5e-09 65.1 58 50.0
BolC9t58667H Brassica oleracea HOM05D000067 ORTHO05D000097 2.5e-09 65.1 64 45.3
BraA07t30247Z Brassica rapa HOM05D000067 ORTHO05D000097 2.5e-09 65.1 58 48.3
THA.LOC104811351 Tarenaya hassleriana HOM05D000067 ORTHO05D000097 3.3e-09 64.7 62 48.4
THA.LOC104822556 Tarenaya hassleriana HOM05D000067 ORTHO05D000097 3.3e-09 64.7 62 48.4
A03p52360 Brassica napus HOM05D000067 ORTHO05D000097 4.3e-09 64.3 59 50.8
BraA03t14311Z Brassica rapa HOM05D000067 ORTHO05D000097 4.3e-09 64.3 59 50.8
A10p15020 Brassica napus HOM05D000067 ORTHO05D000097 5.7e-09 63.9 58 51.7
BraA10t43579Z Brassica rapa HOM05D000067 ORTHO05D000097 5.7e-09 63.9 58 51.7
BraA10t44169Z Brassica rapa HOM05D000067 ORTHO05D000097 7.4e-09 63.5 64 42.2
Carub.0003s1421 Capsella rubella HOM05D000067 ORTHO05D000097 7.4e-09 63.5 64 48.4
Thhalv10001228m.g Eutrema salsugineum HOM05D000067 ORTHO05D000097 7.4e-09 63.5 64 42.2
AT4G13300 Arabidopsis thaliana HOM05D000067 ORTHO05D000097 9.7e-09 63.2 65 47.7
BcaB02g07718 Brassica carinata HOM05D000067 ORTHO05D000097 9.7e-09 63.2 60 50.0
BcaC04g21763 Brassica carinata HOM05D000067 ORTHO05D000097 9.7e-09 63.2 58 48.3
BcaC06g32961 Brassica carinata HOM05D000067 ORTHO05D000097 9.7e-09 63.2 59 54.2
C04p23020 Brassica napus HOM05D000067 ORTHO05D000097 1.3e-08 62.8 47 59.6
C09p58010 Brassica napus HOM05D000067 ORTHO05D000097 1.3e-08 62.8 64 43.8
BolC1t01384H Brassica oleracea HOM05D000067 ORTHO05D000097 1.3e-08 62.8 62 58.1
BolC7t45580H Brassica oleracea HOM05D000067 ORTHO05D000097 1.3e-08 62.8 59 50.8
AT4G13280 Arabidopsis thaliana HOM05D000067 ORTHO05D000097 2.2e-08 62.0 65 44.6
A10p11940 Brassica napus HOM05D000067 ORTHO05D021451 2.2e-08 62.0 64 51.6
BraA10t43290Z Brassica rapa HOM05D000067 ORTHO05D021451 2.2e-08 62.0 64 51.6
Gohir.A11G250700 Gossypium hirsutum HOM05D000067 ORTHO05D000097 2.2e-08 62.0 62 48.4
BcaB04g18850 Brassica carinata HOM05D000067 ORTHO05D000097 2.8e-08 61.6 64 46.9
Carub.0008s0370 Capsella rubella HOM05D000067 ORTHO05D000097 2.8e-08 61.6 64 43.8
AL9U10470 Arabidopsis lyrata HOM05D000067 ORTHO05D000097 3.7e-08 61.2 65 44.6
BcaB07g30510 Brassica carinata HOM05D000067 ORTHO05D000097 3.7e-08 61.2 64 40.6
BcaB07g30512 Brassica carinata HOM05D000067 ORTHO05D000097 3.7e-08 61.2 64 40.6
Thhalv10001108m.g Eutrema salsugineum HOM05D000067 ORTHO05D000097 3.7e-08 61.2 64 40.6
BcaC01g03927 Brassica carinata HOM05D000067 ORTHO05D000097 4.8e-08 60.8 63 44.4
BcaC03g16681 Brassica carinata HOM05D000067 ORTHO05D000097 4.8e-08 60.8 64 40.6
C02p45140 Brassica napus HOM05D000067 ORTHO05D000097 4.8e-08 60.8 64 40.6
C02p45210 Brassica napus HOM05D000067 ORTHO05D000097 4.8e-08 60.8 64 40.6
BolC3t16970H Brassica oleracea HOM05D000067 ORTHO05D000097 4.8e-08 60.8 63 44.4
Sp7g10790 Schrenkiella parvula HOM05D000067 ORTHO05D000097 4.8e-08 60.8 60 48.3
CARHR218840 Cardamine hirsuta HOM05D000067 ORTHO05D000097 6.3e-08 60.5 65 43.1
Sp1g39450 Schrenkiella parvula HOM05D000067 ORTHO05D000097 6.3e-08 60.5 64 45.3
AT3G14490 Arabidopsis thaliana HOM05D000067 ORTHO05D000097 1.1e-07 59.7 64 45.3
C03p47080 Brassica napus HOM05D000067 ORTHO05D000097 1.1e-07 59.7 64 46.9
C07p50810 Brassica napus HOM05D000067 ORTHO05D000097 1.1e-07 59.7 55 52.7
Thhalv10028539m.g Eutrema salsugineum HOM05D000067 ORTHO05D000097 1.1e-07 59.7 64 46.9
Sp2g09440 Schrenkiella parvula HOM05D000067 ORTHO05D000097 1.1e-07 59.7 64 40.6
THA.LOC104822557 Tarenaya hassleriana HOM05D000067 ORTHO05D000097 1.1e-07 59.7 63 44.4
Aa31sc99G120 Aethionema arabicum HOM05D000067 ORTHO05D000097 1.4e-07 59.3 66 39.4
BraA02t07884Z Brassica rapa HOM05D000067 ORTHO05D000097 1.4e-07 59.3 64 39.1
Carub.0007s2933 Capsella rubella HOM05D000067 ORTHO05D000097 1.4e-07 59.3 65 43.1
BcaC01g03925 Brassica carinata HOM05D000067 ORTHO05D000097 1.8e-07 58.9 56 51.8
CARHR220940 Cardamine hirsuta HOM05D000067 ORTHO05D013969 1.8e-07 58.9 65 46.2
BcaB04g18851 Brassica carinata HOM05D000067 ORTHO05D000097 2.4e-07 58.5 64 45.3
AT5G44630 Arabidopsis thaliana HOM05D000067 ORTHO05D000097 3.1e-07 58.2 64 40.6
AL3G26870 Arabidopsis lyrata HOM05D000067 ORTHO05D000097 4.1e-07 57.8 63 42.9
A03p38870 Brassica napus HOM05D000067 ORTHO05D000097 4.1e-07 57.8 64 45.3
BraA03t13036Z Brassica rapa HOM05D000067 ORTHO05D000097 4.1e-07 57.8 64 45.3
CARHR178290 Cardamine hirsuta HOM05D000067 ORTHO05D000097 4.1e-07 57.8 64 39.1
Duzib268G0408 Durio zibethinus HOM05D000067 ORTHO05D000097 4.1e-07 57.8 62 43.5
C02p16080 Brassica napus HOM05D000067 ORTHO05D000097 5.3e-07 57.4 54 51.9
Duzib213G0501 Durio zibethinus HOM05D000067 ORTHO05D000097 5.3e-07 57.4 62 45.2
AL4G13120 Arabidopsis lyrata HOM05D000067 ORTHO05D000097 6.9e-07 57.0 65 43.1
AL8G15010 Arabidopsis lyrata HOM05D000067 ORTHO05D000097 6.9e-07 57.0 64 40.6
BcaB04g18357 Brassica carinata HOM05D000067 ORTHO05D000097 6.9e-07 57.0 58 46.6
Potri.007G074400 Populus trichocarpa HOM05D000067 ORTHO05D000097 6.9e-07 57.0 57 43.9
AL1G48150 Arabidopsis lyrata HOM05D000067 ORTHO05D000097 9.1e-07 56.6 63 42.9
AT4G20210 Arabidopsis thaliana HOM05D000067 ORTHO05D000097 9.1e-07 56.6 64 43.8
A04p12240 Brassica napus HOM05D000067 ORTHO05D000097 9.1e-07 56.6 64 39.1
BraA04t16887Z Brassica rapa HOM05D000067 ORTHO05D000097 9.1e-07 56.6 64 39.1
CARHR131650 Cardamine hirsuta HOM05D000067 ORTHO05D000097 9.1e-07 56.6 64 42.2
Gohir.A11G280800 Gossypium hirsutum HOM05D000067 ORTHO05D000097 9.1e-07 56.6 62 43.5
Gohir.D11G291500 Gossypium hirsutum HOM05D000067 ORTHO05D000097 9.1e-07 56.6 62 43.5
Gorai.007G315500 Gossypium raimondii HOM05D000067 ORTHO05D000097 9.1e-07 56.6 62 43.5
AT3G29110 Arabidopsis thaliana HOM05D000067 ORTHO05D000097 1.2e-06 56.2 55 50.9
AT4G15870 Arabidopsis thaliana HOM05D000067 ORTHO05D000097 1.2e-06 56.2 66 47.0
Carub.0008s0366 Capsella rubella HOM05D000067 ORTHO05D000097 1.5e-06 55.8 62 40.3
Gorai.007G315400 Gossypium raimondii HOM05D000067 ORTHO05D000097 1.5e-06 55.8 62 43.5
Prupe.4G197900 Prunus persica HOM05D000067 ORTHO05D000097 1.5e-06 55.8 62 45.2
Carub.0008s0365 Capsella rubella HOM05D000067 ORTHO05D000097 2.0e-06 55.5 64 37.5
CARHR220910 Cardamine hirsuta HOM05D000067 ORTHO05D000097 2.6e-06 55.1 65 43.1
Dinv11658 Davidia involucrata HOM05D000067 ORTHO05D000097 2.6e-06 55.1 63 41.3
Gohir.D11G291400 Gossypium hirsutum HOM05D000067 ORTHO05D000097 2.6e-06 55.1 62 41.9
Potri.007G074466 Populus trichocarpa HOM05D000067 ORTHO05D000097 2.6e-06 55.1 57 42.1
AUR62034218 Chenopodium quinoa HOM05D000067 ORTHO05D000097 3.4e-06 54.7 63 38.1
RcHm_v2.0_Chr5g0059501 Rosa chinensis HOM05D000067 ORTHO05D000097 3.4e-06 54.7 53 50.9
RcHm_v2.0_Chr5g0059511 Rosa chinensis HOM05D000067 ORTHO05D000097 3.4e-06 54.7 53 50.9
Thecc.07G057200 Theobroma cacao HOM05D000067 ORTHO05D000097 3.4e-06 54.7 63 46.0
A02p28480 Brassica napus HOM05D000067 ORTHO05D000097 4.5e-06 54.3 53 43.4
A03p38860 Brassica napus HOM05D000067 ORTHO05D000097 4.5e-06 54.3 63 39.7
C03p47050 Brassica napus HOM05D000067 ORTHO05D000097 4.5e-06 54.3 63 39.7
BraA03t13034Z Brassica rapa HOM05D000067 ORTHO05D000097 4.5e-06 54.3 63 39.7
FvH4_3g21560 Fragaria vesca HOM05D000067 ORTHO05D000097 4.5e-06 54.3 62 43.5
FAN11G3925 Fragaria x ananassa HOM05D000067 ORTHO05D000097 4.5e-06 54.3 62 43.5
FAN16G0384 Fragaria x ananassa HOM05D000067 ORTHO05D000097 4.5e-06 54.3 62 43.5
Prupe.4G194300 Prunus persica HOM05D000067 ORTHO05D000097 4.5e-06 54.3 62 43.5
Thecc.05G118800 Theobroma cacao HOM05D000067 ORTHO05D000097 4.5e-06 54.3 62 40.3
AL8G15000 Arabidopsis lyrata HOM05D000067 ORTHO05D000097 5.9e-06 53.9 54 42.6
EL10Ac4g07996 Beta vulgaris HOM05D000067 ORTHO05D000097 5.9e-06 53.9 63 39.7
BcaB05g22210 Brassica carinata HOM05D000067 ORTHO05D000097 5.9e-06 53.9 53 49.1
CARHR033160 Cardamine hirsuta HOM05D000067 ORTHO05D000097 5.9e-06 53.9 64 40.6
Cc05_g13070 Coffea canephora HOM05D000067 ORTHO05D000097 5.9e-06 53.9 62 43.5
FvH4_3g21391 Fragaria vesca HOM05D000067 ORTHO05D000097 5.9e-06 53.9 62 40.3
FAN11G0114 Fragaria x ananassa HOM05D000067 ORTHO05D000097 5.9e-06 53.9 62 40.3
FAN28G2726 Fragaria x ananassa HOM05D000067 ORTHO05D000097 5.9e-06 53.9 62 40.3
Manes.18G102001 Manihot esculenta HOM05D000067 ORTHO05D000097 5.9e-06 53.9 53 47.2
RcHm_v2.0_Chr6g0305391 Rosa chinensis HOM05D000067 ORTHO05D000097 5.9e-06 53.9 57 42.1
CANSAT11G2229 Cannabis sativa HOM05D000067 ORTHO05D000097 7.7e-06 53.5 62 38.7
Gohir.A11G285700 Gossypium hirsutum HOM05D000067 ORTHO05D000097 7.7e-06 53.5 62 41.9
Manes.18G101900 Manihot esculenta HOM05D000067 ORTHO05D000097 7.7e-06 53.5 53 47.2
RcHm_v2.0_Chr5g0060241 Rosa chinensis HOM05D000067 ORTHO05D000097 7.7e-06 53.5 58 44.8


User provided reference genes

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