Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB08g36995 Brassica carinata HOM05D004929 ORTHO05D006492 1.3e-207 726.1 361 100.0
BcaC04g19032 Brassica carinata HOM05D004929 ORTHO05D006492 1.4e-201 706.1 361 98.1
BraA10t44472Z Brassica rapa HOM05D004929 ORTHO05D006492 3.4e-187 658.3 369 90.5
AL6G25200 Arabidopsis lyrata HOM05D004929 ORTHO05D006492 3.4e-179 631.7 375 86.1
AT5G14470 Arabidopsis thaliana HOM05D004929 ORTHO05D006492 1.8e-175 619.4 373 84.5
BcaB08g36997 Brassica carinata HOM05D004929 ORTHO05D006492 9.6e-174 613.6 373 84.5
CARHR198840 Cardamine hirsuta HOM05D004929 ORTHO05D006492 1.1e-172 610.1 373 83.4
Carub.0006s1265 Capsella rubella HOM05D004929 ORTHO05D006492 4.1e-172 608.2 370 83.0
Thhalv10013912m.g Eutrema salsugineum HOM05D004929 ORTHO05D006492 9.3e-169 597.0 361 82.8
A10p24090 Brassica napus HOM05D004929 ORTHO05D006492 8.8e-159 563.9 373 79.4
Thhalv10020980m.g Eutrema salsugineum HOM05D004929 ORTHO05D006492 4.5e-155 551.6 375 73.9
CARHR075280 Cardamine hirsuta HOM05D004929 ORTHO05D006492 8.5e-154 547.4 359 75.5
BcaC01g04530 Brassica carinata HOM05D004929 ORTHO05D006492 9.4e-153 543.9 371 73.3
C03p39500 Brassica napus HOM05D004929 ORTHO05D006492 9.4e-153 543.9 371 73.9
BraA03t12414Z Brassica rapa HOM05D004929 ORTHO05D006492 9.4e-153 543.9 355 76.1
AT3G01640 Arabidopsis thaliana HOM05D004929 ORTHO05D006492 3.6e-152 542.0 371 73.3
AL3G10510 Arabidopsis lyrata HOM05D004929 ORTHO05D006492 1.0e-151 540.4 371 73.3
A03p32440 Brassica napus HOM05D004929 ORTHO05D006492 3.9e-151 538.5 355 75.5
Aa31LG5G10780 Aethionema arabicum HOM05D004929 ORTHO05D006492 5.1e-151 538.1 357 76.2
BolC3t16218H Brassica oleracea HOM05D004929 ORTHO05D006492 5.1e-151 538.1 355 75.2
THA.LOC104821096 Tarenaya hassleriana HOM05D004929 ORTHO05D006492 4.4e-150 535.0 372 73.1
Sp3g00410 Schrenkiella parvula HOM05D004929 ORTHO05D006492 9.7e-150 533.9 371 73.0
QL02p074005 Quercus lobata HOM05D004929 ORTHO05D006492 1.6e-147 526.6 365 72.9
Carub.0003s0042 Capsella rubella HOM05D004929 ORTHO05D006492 1.1e-145 520.4 368 70.9
Nn8g40033 Nelumbo nucifera HOM05D004929 ORTHO05D006492 1.9e-145 519.6 361 71.7
Thecc.04G019500 Theobroma cacao HOM05D004929 ORTHO05D006492 5.5e-145 518.1 356 72.8
MELO3C021592.2 Cucumis melo HOM05D004929 ORTHO05D006492 2.7e-144 515.8 364 70.3
Duzib147G0164 Durio zibethinus HOM05D004929 ORTHO05D006492 1.0e-143 513.8 364 71.2
CsaV3_5G027030 Cucumis sativus L. HOM05D004929 ORTHO05D006492 4.0e-143 511.9 364 70.1
Gohir.D09G029800 Gossypium hirsutum HOM05D004929 ORTHO05D006492 4.0e-143 511.9 373 68.4
Gohir.A09G030100 Gossypium hirsutum HOM05D004929 ORTHO05D006492 6.7e-143 511.1 373 67.8
Gorai.006G034800 Gossypium raimondii HOM05D004929 ORTHO05D006492 1.1e-142 510.4 373 68.4
ClCG09G019380 Citrullus lanatus HOM05D004929 ORTHO05D006492 2.6e-142 509.2 364 69.5
Sed0027438 Sechium edule HOM05D004929 ORTHO05D006492 2.6e-142 509.2 361 70.6
Ciclev10015593m.g Citrus clementina HOM05D004929 ORTHO05D006492 3.3e-142 508.8 356 70.2
Prupe.3G293800 Prunus persica HOM05D004929 ORTHO05D006492 7.5e-142 507.7 357 71.4
Manes.15G151900 Manihot esculenta HOM05D004929 ORTHO05D006492 2.8e-141 505.8 354 70.3
MD09G1023000 Malus domestica HOM05D004929 ORTHO05D006492 4.8e-141 505.0 365 69.6
PGR142G3088 Punica granatum HOM05D004929 ORTHO05D006492 4.8e-141 505.0 372 68.0
Cpa.g.sc108.76 Carica papaya HOM05D003450 ORTHO05D004150 6.3e-141 504.6 352 70.2
Sabra16G0222700 Salix brachista HOM05D004929 ORTHO05D006492 1.1e-140 503.8 372 67.2
Dinv25726 Davidia involucrata HOM05D004929 ORTHO05D006492 1.4e-140 503.4 372 69.4
TWI56G0780 Tripterygium wilfordii HOM05D004929 ORTHO05D006492 1.8e-140 503.1 362 68.8
C09p62710 Brassica napus HOM05D004929 ORTHO05D006492 2.4e-140 502.7 366 74.9
Cfa007339 Carpinus fangiana HOM05D004929 ORTHO05D006492 3.1e-140 502.3 364 69.2
Aqoxy5G00914 Aquilegia oxysepala HOM05D004929 ORTHO05D006492 4.1e-140 501.9 354 70.3
Haze_14758 Corylus avellana HOM05D004929 ORTHO05D006492 5.3e-140 501.5 373 68.9
BolC9t59108H Brassica oleracea HOM05D004929 ORTHO05D006492 7.0e-140 501.1 375 73.6
CiPaw.03G045500 Carya illinoinensis HOM05D004929 ORTHO05D006492 9.1e-140 500.7 359 70.2
Potri.001G343400 Populus trichocarpa HOM05D004929 ORTHO05D006492 9.1e-140 500.7 363 68.0
TWI12G0632 Tripterygium wilfordii HOM05D004929 ORTHO05D006492 1.6e-139 500.0 355 69.0
TAR633G2310 Trochodendron aralioides HOM05D004929 ORTHO05D006492 2.0e-139 499.6 372 68.3
MD17G1022300 Malus domestica HOM05D004929 ORTHO05D006492 2.7e-139 499.2 373 69.2
Rhsim10G0014700 Rhododendron simsii HOM05D004929 ORTHO05D006492 3.5e-139 498.8 360 69.2
vmacro05876 Vaccinium macrocarpon HOM05D004929 ORTHO05D006492 4.5e-139 498.4 356 69.7
FvH4_6g51800 Fragaria vesca HOM05D004929 ORTHO05D006492 5.9e-139 498.0 370 68.9
CANSAT64G1903 Cannabis sativa HOM05D004929 ORTHO05D006492 1.0e-138 497.3 357 70.0
GSVIVG01032385001 Vitis vinifera HOM05D004929 ORTHO05D006492 1.0e-138 497.3 357 69.5
FAN09G2944 Fragaria x ananassa HOM05D004929 ORTHO05D006492 1.7e-138 496.5 370 68.9
FAN14G2766 Fragaria x ananassa HOM05D004929 ORTHO05D006492 2.2e-138 496.1 370 68.9
Actinidia05982 Actinidia chinensis HOM05D004929 ORTHO05D006492 2.9e-138 495.7 359 68.8
Sed0020215 Sechium edule HOM05D004929 ORTHO05D006492 3.8e-138 495.4 364 68.1
CiPaw.04G029600 Carya illinoinensis HOM05D004929 ORTHO05D006492 5.0e-138 495.0 355 70.1
Lju41A43T26 Lonicera japonica HOM05D004929 ORTHO05D006492 5.0e-138 495.0 363 66.9
Migut.K01411 Erythranthe guttata HOM05D004929 ORTHO05D006492 6.5e-138 494.6 360 69.4
PSO699G0033 Papaver somniferum HOM05D004929 ORTHO05D006492 3.2e-137 492.3 356 69.1
FAN05G4087 Fragaria x ananassa HOM05D004929 ORTHO05D006492 5.5e-137 491.5 357 69.5
RcHm_v2.0_Chr2g0173281 Rosa chinensis HOM05D004929 ORTHO05D006492 5.5e-137 491.5 373 67.3
Cc09_g04510 Coffea canephora HOM05D004929 ORTHO05D006492 1.2e-136 490.3 358 68.4
Nitab4.5_0001860g0030 Nicotiana tabacum HOM05D004929 ORTHO05D006492 1.2e-136 490.3 358 67.9
Peaxi162Scf03028g00012 Petunia axillaris HOM05D004929 ORTHO05D006492 1.6e-136 490.0 354 69.2
PSO384G0906 Papaver somniferum HOM05D004929 ORTHO05D006492 2.1e-136 489.6 356 68.8
Duzib264G0638 Durio zibethinus HOM05D004929 ORTHO05D006492 3.6e-136 488.8 392 65.1
Peaxi162Scf00129g01650 Petunia axillaris HOM05D004929 ORTHO05D006492 6.1e-136 488.0 354 68.9
Solyc02g093440.4 Solanum lycopersicum HOM05D004929 ORTHO05D006492 8.0e-136 487.6 355 68.7
Sopen02g038230 Solanum pennellii HOM05D004929 ORTHO05D006492 3.0e-135 485.7 355 68.7
CAN.G473.20 Capsicum annuum HOM05D004929 ORTHO05D006492 3.4e-134 482.3 359 67.1
FAN02G0047 Fragaria x ananassa HOM05D004929 ORTHO05D006492 3.4e-134 482.3 382 66.2
HanXRQChr17g0548641 Helianthus annuus HOM05D004929 ORTHO05D006492 4.4e-134 481.9 358 68.7
SalBow7G3047 Salvia bowleyana HOM05D004929 ORTHO05D006492 4.4e-134 481.9 359 66.9
Aqoxy4G03095 Aquilegia oxysepala HOM05D004929 ORTHO05D006492 5.7e-134 481.5 367 65.4
Peaxi162Scf00080g01316 Petunia axillaris HOM05D004929 ORTHO05D005557 9.8e-134 480.7 356 68.3
PGSC0003DMG400012608 Solanum tuberosum HOM05D004929 ORTHO05D006492 3.7e-133 478.8 355 67.6
ECA246G1179 Erigeron canadensis HOM05D004929 ORTHO05D006492 8.3e-133 477.6 358 67.9
Glyma.05G002500 Glycine max HOM05D004929 ORTHO05D006492 1.1e-132 477.2 358 65.6
HPP92_015407 Vanilla planifolia HOM05D004929 ORTHO05D006492 1.4e-132 476.9 361 66.5
arahy.Tifrunner.gnm1.ann1.FEY4ZS Arachis hypogaea HOM05D004929 ORTHO05D006492 1.8e-132 476.5 356 66.6
TPR.G31950 Trifolium pratense HOM05D004929 ORTHO05D006492 1.8e-132 476.5 360 66.4
arahy.Tifrunner.gnm1.ann1.NF5K9F Arachis hypogaea HOM05D004929 ORTHO05D006492 2.4e-132 476.1 356 66.3
MSTRG.3138 Avicennia marina HOM05D004929 ORTHO05D006492 5.4e-132 474.9 358 67.0
AUR62008872 Chenopodium quinoa HOM05D004929 ORTHO05D006492 5.4e-132 474.9 351 67.0
Phvul.004G004700 Phaseolus vulgaris HOM05D004929 ORTHO05D006492 5.4e-132 474.9 353 66.6
HanXRQChr17g0548651 Helianthus annuus HOM05D004929 ORTHO05D006492 7.0e-132 474.6 350 68.9
Lsat_1_v5_gn_0_18301 Lactuca sativa HOM05D004929 ORTHO05D006492 1.2e-131 473.8 356 66.6
VMungo0464G1388 Vigna mungo HOM05D004929 ORTHO05D006492 1.2e-131 473.8 353 66.9
Ca_04143_v3 Cicer arietinum L. HOM05D004929 ORTHO05D006492 2.0e-131 473.0 360 66.7
MBI05_g22077_MAGBIO Magnolia biondii HOM05D004929 ORTHO05D006492 2.0e-131 473.0 355 67.9
Medtr6g004430 Medicago truncatula HOM05D004929 ORTHO05D006492 4.5e-131 471.9 354 66.7
Hund23289 Selenicereus undatus HOM05D004929 ORTHO05D006492 4.5e-131 471.9 360 65.8
EL10Ac6g14097 Beta vulgaris HOM05D004929 ORTHO05D006492 5.9e-131 471.5 355 67.0
DCAR_021732 Daucus carota HOM05D004929 ORTHO05D006492 5.9e-131 471.5 337 69.4
Lalb_Chr06g0176621 Lupinus albus HOM05D004929 ORTHO05D006492 7.7e-131 471.1 354 65.0
Ah.03g137000 Amaranthus hybridus HOM05D004929 ORTHO05D006492 3.6e-128 462.2 354 66.7
Lj2g0024676 Lotus japonicus HOM05D004929 ORTHO05D006492 3.6e-128 462.2 358 65.4
Zm00001eb025800 Zea mays HOM05D004929 ORTHO05D006492 3.0e-127 459.1 364 64.8
Os11g0217300 Oryza sativa ssp. japonica HOM05D004929 ORTHO05D006492 4.9e-125 451.8 347 66.3
AUR62031837 Chenopodium quinoa HOM05D004929 ORTHO05D006492 1.1e-124 450.7 396 59.1
Eucgr.I01731 Eucalyptus grandis HOM05D004929 ORTHO05D006492 1.8e-124 449.9 291 75.6
ATR0827G043 Amborella trichopoda HOM05D004929 ORTHO05D006492 1.6e-123 446.8 373 61.9
arahy.Tifrunner.gnm1.ann1.BJ3QP1 Arachis hypogaea HOM05D004929 ORTHO05D006492 8.0e-120 434.5 323 67.8
COL.COLO4_29172 Corchorus olitorius HOM05D004929 ORTHO05D006492 8.9e-119 431.0 357 62.7
Oeu018151.1 Olea europaea HOM05D004929 ORTHO05D006492 2.0e-118 429.9 359 62.4
SHI00354 Sapria himalayana HOM05D004929 ORTHO05D006492 1.8e-116 423.3 351 61.3
SMO145G0043 Selaginella moellendorffii HOM05D004929 ORTHO05D006492 7.5e-110 401.4 340 60.0
HPP92_026990 Vanilla planifolia HOM05D004929 ORTHO05D006492 7.0e-108 394.8 276 71.0
Psat1g053480 Pisum sativum HOM05D004929 ORTHO05D006492 6.0e-107 391.7 275 69.8
Sc03g0007290 Simmondsia chinensis HOM05D004929 ORTHO05D006492 1.5e-105 387.1 278 70.9
SGA_v2.0_scaffold30G12409 Striga asiatica HOM05D004929 ORTHO05D006492 2.5e-105 386.3 277 71.5
Dinv33427 Davidia involucrata HOM05D004929 ORTHO05D006492 2.6e-102 376.3 275 68.7
Atru.chr6.2430 Acer truncatum HOM05D004929 ORTHO05D006492 1.4e-100 370.5 239 72.8
Nitab4.5_0006683g0060 Nicotiana tabacum HOM05D004929 ORTHO05D006492 4.1e-100 369.0 359 55.4
Mapoly0023s0058 Marchantia polymorpha HOM05D004929 ORTHO05D006492 2.5e-97 359.8 353 55.5
ATR0681G379 Amborella trichopoda HOM05D004929 ORTHO05D006492 1.4e-95 354.0 258 69.0
unitig_0.g1597 Utricularia gibba HOM05D004929 ORTHO05D006492 1.5e-94 350.5 275 65.5
SHI25478 Sapria himalayana HOM05D004929 ORTHO05D006492 4.9e-93 345.5 290 61.4
CBR_g3618 Chara braunii HOM05D004929 ORTHO05D006492 1.6e-91 340.5 337 53.4
SGA_v2.0_scaffold47G17516 Striga asiatica HOM05D004929 ORTHO05D006492 2.3e-90 336.7 333 55.9
AagrBONN_evm.TU.Sc2ySwM_228.449 Anthoceros agrestis HOM05D000718 ORTHO05D002712 3.0e-90 336.3 335 55.5
Pp3c22_9380 Physcomitrium patens HOM05D004929 ORTHO05D006492 1.3e-85 320.9 274 59.5
BcaB08g36982 Brassica carinata HOM05D004929 ORTHO05D006492 6.2e-80 302.0 167 90.4
Cre02.g107600 Chlamydomonas reinhardtii HOM05D004929 ORTHO05D006492 4.9e-77 292.4 357 47.6
BolC9t59344H Brassica oleracea HOM05D004929 ORTHO05D006492 2.4e-76 290.0 198 77.3
Nitab4.5_0000040g0670 Nicotiana tabacum HOM05D004929 ORTHO05D006492 1.3e-74 284.3 235 62.1
MCO09G795 Micromonas commoda HOM05D004929 ORTHO05D006492 1.5e-70 270.8 357 44.5
CDE07G0337 Ceratophyllum demersum HOM05D004929 ORTHO05D006492 2.6e-70 270.0 215 63.7
Nitab4.5_0001550g0030 Nicotiana tabacum HOM05D004929 ORTHO05D006492 2.2e-69 266.9 235 60.0
Oeu033729.3 Olea europaea HOM05D004929 ORTHO05D006492 2.1e-67 260.4 210 65.2
PRCOL_00005101 Prasinoderma coloniale HOM05D004929 ORTHO05D006492 6.0e-67 258.8 352 45.7
MSTRG.3285 Avicennia marina HOM05D004929 ORTHO05D006492 1.8e-47 194.1 132 72.7
MBI05_g01825_MAGBIO Magnolia biondii HOM05D004929 ORTHO05D006492 5.3e-47 192.6 222 51.4
A10p26090 Brassica napus HOM05D004929 ORTHO05D006492 1.1e-44 184.9 191 58.1
Atru.chr6.2429 Acer truncatum HOM05D004929 ORTHO05D006492 6.5e-37 159.1 114 66.7
CDE07G1161 Ceratophyllum demersum HOM05D004929 ORTHO05D043891 9.4e-36 155.2 114 65.8
BcaNung06761 Brassica carinata HOM05D004929 ORTHO05D006492 9.1e-31 138.7 70 94.3
Sp6g29550 Schrenkiella parvula HOM05D004929 ORTHO05D043891 4.7e-27 126.3 68 91.2
Sopen02g038030 Solanum pennellii HOM05D004929 ORTHO05D006492 9.8e-17 92.0 68 60.3
arahy.Tifrunner.gnm1.ann1.6CI6DX Arachis hypogaea HOM05D004929 ORTHO05D031499 8.8e-10 68.9 44 65.9
MD17G1022500 Malus domestica HOM05D004929 ORTHO05D006492 8.8e-10 68.9 80 51.2
arahy.Tifrunner.gnm1.ann1.XQCE19 Arachis hypogaea HOM05D004929 ORTHO05D031499 2.2e-08 64.3 48 56.2
Glyma.19G002700 Glycine max HOM05D004929 ORTHO05D215243 7.0e-07 59.3 81 39.5


User provided reference genes

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