Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB08g36827 Brassica carinata HOM05D005820 ORTHO05D007116 0.0e+00 1333.5 703 100.0
C09p60450 Brassica napus HOM05D005820 ORTHO05D007116 0.0e+00 1181.0 748 85.3
BraA10t44315Z Brassica rapa HOM05D005820 ORTHO05D007116 0.0e+00 1166.0 749 84.8
A10p22530 Brassica napus HOM05D005820 ORTHO05D007116 0.0e+00 1164.4 746 84.9
BolC9t58877H Brassica oleracea HOM05D005820 ORTHO05D007116 0.0e+00 1154.4 802 79.1
Sp6g27470 Schrenkiella parvula HOM05D005820 ORTHO05D007116 0.0e+00 1103.6 753 78.1
Thhalv10012783m.g Eutrema salsugineum HOM05D005820 ORTHO05D007116 0.0e+00 1078.2 753 76.5
AL6G27690 Arabidopsis lyrata HOM05D005820 ORTHO05D007116 6.4e-307 1057.0 754 76.8
Carub.0006s1489 Capsella rubella HOM05D005820 ORTHO05D007116 9.0e-301 1036.6 754 75.2
AT5G16690 Arabidopsis thaliana HOM05D005820 ORTHO05D007116 1.3e-299 1032.7 721 77.9
CARHR196510 Cardamine hirsuta HOM05D005820 ORTHO05D007116 2.4e-298 1028.5 713 78.0
Aa31LG11G12940 Aethionema arabicum HOM05D005820 ORTHO05D007116 1.0e-280 969.9 802 67.2
THA.LOC104821161 Tarenaya hassleriana HOM05D005820 ORTHO05D007116 2.6e-231 805.8 761 59.1
Atru.chr12.1871 Acer truncatum HOM05D005820 ORTHO05D007116 9.9e-191 671.0 765 50.1
Cfa016076 Carpinus fangiana HOM05D005820 ORTHO05D007116 1.1e-186 657.5 714 49.9
Atru.chr13.1435 Acer truncatum HOM05D005820 ORTHO05D007116 4.3e-186 655.6 767 49.4
CiPaw.05G212600 Carya illinoinensis HOM05D005820 ORTHO05D007116 5.5e-181 638.6 714 49.3
QL09p020654 Quercus lobata HOM05D005820 ORTHO05D007116 7.9e-180 634.8 713 49.8
Potri.013G077200 Populus trichocarpa HOM05D005820 ORTHO05D007116 1.3e-179 634.0 772 48.3
Gorai.003G057900 Gossypium raimondii HOM05D005820 ORTHO05D007116 5.1e-179 632.1 693 50.4
Gohir.D03G055100 Gossypium hirsutum HOM05D005820 ORTHO05D007116 1.9e-178 630.2 693 50.2
TWI53G1480 Tripterygium wilfordii HOM05D005820 ORTHO05D007116 4.3e-178 629.0 724 49.9
Gohir.A02G125300 Gossypium hirsutum HOM05D005820 ORTHO05D007116 1.4e-176 624.0 654 51.5
TAR633G0012 Trochodendron aralioides HOM05D005820 ORTHO05D007116 1.7e-174 617.1 752 47.3
Nn3g21157 Nelumbo nucifera HOM05D005820 ORTHO05D007116 4.9e-174 615.5 772 46.1
Duzib106G1003 Durio zibethinus HOM05D005820 ORTHO05D007116 1.0e-171 607.8 709 48.5
CSS0036845 Camellia sinensis var. sinensis HOM05D005820 ORTHO05D007116 1.8e-171 607.1 710 48.0
COL.COLO4_15131 Corchorus olitorius HOM05D005820 ORTHO05D007116 6.7e-171 605.1 721 47.7
Thecc.05G222900 Theobroma cacao HOM05D005820 ORTHO05D007116 2.5e-170 603.2 702 49.4
MELO3C005455.2 Cucumis melo HOM05D005820 ORTHO05D007116 2.5e-165 586.6 714 46.9
CsaV3_5G005010 Cucumis sativus L. HOM05D005820 ORTHO05D007116 3.2e-165 586.3 719 46.7
TAR365G1123 Trochodendron aralioides HOM05D005820 ORTHO05D007116 5.5e-165 585.5 699 47.6
TAR365G1018 Trochodendron aralioides HOM05D005820 ORTHO05D007116 1.2e-164 584.3 699 48.2
Sed0005542 Sechium edule HOM05D005820 ORTHO05D007116 6.1e-164 582.0 720 45.6
DCAR_020431 Daucus carota HOM05D005820 ORTHO05D007116 3.9e-163 579.3 705 46.7
Haze_00369 Corylus avellana HOM05D005820 ORTHO05D007116 6.3e-161 572.0 783 43.3
Lj3g0016493 Lotus japonicus HOM05D005820 ORTHO05D007116 6.3e-161 572.0 713 46.7
Glyma.12G014600 Glycine max HOM05D005820 ORTHO05D007116 1.5e-159 567.4 763 43.4
PSO339G0775 Papaver somniferum HOM05D005820 ORTHO05D007116 2.6e-159 566.6 755 44.9
Actinidia08766 Actinidia chinensis HOM05D005820 ORTHO05D007116 3.8e-158 562.8 654 48.0
Medtr5g082610 Medicago truncatula HOM05D005820 ORTHO05D007116 3.8e-158 562.8 751 43.4
Phvul.011G017500 Phaseolus vulgaris HOM05D005820 ORTHO05D007116 1.1e-157 561.2 775 43.2
PSO210G4891 Papaver somniferum HOM05D005820 ORTHO05D007116 1.6e-156 557.4 752 44.0
PSO384G2364 Papaver somniferum HOM05D005820 ORTHO05D007116 2.1e-156 557.0 786 42.7
Aqoxy2G01900 Aquilegia oxysepala HOM05D005820 ORTHO05D007116 3.6e-156 556.2 717 44.9
RcHm_v2.0_Chr1g0384611 Rosa chinensis HOM05D005820 ORTHO05D007116 4.6e-156 555.8 709 45.4
Prupe.2G329300 Prunus persica HOM05D005820 ORTHO05D007116 1.0e-155 554.7 658 48.2
CANSAT54G2180 Cannabis sativa HOM05D005820 ORTHO05D007116 5.1e-155 552.4 712 45.4
VMungo1127G1342 Vigna mungo HOM05D005820 ORTHO05D007116 1.1e-154 551.2 784 42.2
FvH4_7g34260 Fragaria vesca HOM05D005820 ORTHO05D007116 4.3e-154 549.3 710 45.2
PGR042G2204 Punica granatum HOM05D005820 ORTHO05D007116 4.3e-154 549.3 691 45.2
FAN01G2368 Fragaria x ananassa HOM05D005820 ORTHO05D007116 3.1e-152 543.1 710 44.8
FAN03G2216 Fragaria x ananassa HOM05D005820 ORTHO05D007116 4.5e-151 539.3 720 44.9
ECA232G1869 Erigeron canadensis HOM05D005820 ORTHO05D007116 7.7e-151 538.5 714 43.1
ECA233G1554 Erigeron canadensis HOM05D005820 ORTHO05D007116 1.9e-149 533.9 719 42.7
Peaxi162Scf00046g02624 Petunia axillaris HOM05D005820 ORTHO05D007116 3.2e-149 533.1 713 43.9
MD07G1032700 Malus domestica HOM05D005820 ORTHO05D007116 9.4e-149 531.6 701 44.8
Sopen12g007200 Solanum pennellii HOM05D005820 ORTHO05D007116 7.9e-148 528.5 714 43.0
vmacro06371 Vaccinium macrocarpon HOM05D005820 ORTHO05D007116 7.9e-148 528.5 707 45.3
Solyc12g013880.2 Solanum lycopersicum HOM05D005820 ORTHO05D007116 1.0e-147 528.1 714 43.1
TPR.G19809 Trifolium pratense HOM05D005820 ORTHO05D007116 1.4e-147 527.7 639 45.5
AUR62033087 Chenopodium quinoa HOM05D005820 ORTHO05D007116 3.0e-147 526.6 701 43.9
MSTRG.19155 Avicennia marina HOM05D005820 ORTHO05D007116 4.8e-145 519.2 709 42.2
HanXRQChr15g0492741 Helianthus annuus HOM05D005820 ORTHO05D007116 2.4e-144 516.9 707 42.0
ATR0829G080 Amborella trichopoda HOM05D005820 ORTHO05D007116 7.7e-143 511.9 734 41.6
EL10Ac4g08387 Beta vulgaris HOM05D005820 ORTHO05D007116 5.0e-142 509.2 670 43.9
Rhsim03G0224500 Rhododendron simsii HOM05D005820 ORTHO05D007116 5.0e-142 509.2 751 40.6
Cc10_g10830 Coffea canephora HOM05D005820 ORTHO05D007116 1.9e-141 507.3 717 42.8
EL10Ac2g03131 Beta vulgaris HOM05D005820 ORTHO05D007116 1.6e-140 504.2 669 43.2
Zm00001eb031810 Zea mays HOM05D005820 ORTHO05D007116 3.6e-140 503.1 709 42.3
Lsat_1_v5_gn_9_46201 Lactuca sativa HOM05D005820 ORTHO05D007116 4.7e-140 502.7 746 39.1
Os10g0402200 Oryza sativa ssp. japonica HOM05D005820 ORTHO05D007116 3.0e-139 500.0 713 40.7
Manes.08G160700 Manihot esculenta HOM05D005820 ORTHO05D007116 1.5e-138 497.7 582 48.5
Nitab4.5_0012358g0010 Nicotiana tabacum HOM05D005820 ORTHO05D007116 1.3e-134 484.6 712 42.0
Eucgr.A02992 Eucalyptus grandis HOM05D005820 ORTHO05D007116 2.2e-134 483.8 717 40.9
Migut.J00550 Erythranthe guttata HOM05D005820 ORTHO05D007116 2.9e-134 483.4 721 42.2
FAN10G1332 Fragaria x ananassa HOM05D005820 ORTHO05D007116 8.5e-134 481.9 648 44.0
SGA_v2.0_scaffold75G24867 Striga asiatica HOM05D005820 ORTHO05D007116 2.7e-132 476.9 700 41.1
HPP92_000954 Vanilla planifolia HOM05D005820 ORTHO05D007116 3.5e-127 459.9 719 37.7
ClCG01G004810 Citrullus lanatus HOM05D005820 ORTHO05D007116 8.3e-121 438.7 423 54.4
CDE02G0417 Ceratophyllum demersum HOM05D005820 ORTHO05D007116 1.6e-119 434.5 596 41.9
Lalb_Chr01g0000781 Lupinus albus HOM05D005820 ORTHO05D007116 6.1e-116 422.5 498 46.2
Psat5g135040 Pisum sativum HOM05D005820 ORTHO05D007116 2.7e-111 407.1 423 48.5
Hma1.2p1_0419F.1_g149510 Hydrangea macrophylla HOM05D005820 ORTHO05D007116 6.6e-110 402.5 425 50.4
PSO170G6050 Papaver somniferum HOM05D005820 ORTHO05D007116 1.2e-108 398.3 426 50.9
Ciclev10033588m.g Citrus clementina HOM05D005820 ORTHO05D007116 6.2e-108 396.0 423 50.8
unitig_749.g14271 Utricularia gibba HOM05D005820 ORTHO05D007116 1.0e-107 395.2 646 39.6
Sc13g0011020 Simmondsia chinensis HOM05D005820 ORTHO05D007116 8.9e-107 392.1 496 45.4
Sabra13G0066100 Salix brachista HOM05D005820 ORTHO05D007116 9.8e-106 388.7 412 52.2
Nitab4.5_0010710g0030 Nicotiana tabacum HOM05D005820 ORTHO05D007116 2.2e-105 387.5 505 45.5
CAN.G103.20 Capsicum annuum HOM05D005820 ORTHO05D007116 3.2e-104 383.6 495 45.5
Ca_03104_v3 Cicer arietinum L. HOM05D005820 ORTHO05D007116 7.0e-104 382.5 453 47.2
AUR62042764 Chenopodium quinoa HOM05D005820 ORTHO05D007116 3.0e-94 350.5 527 41.2
COL.COLO4_22345 Corchorus olitorius HOM05D005820 ORTHO05D007116 4.7e-92 343.2 362 51.4
arahy.Tifrunner.gnm1.ann1.9S7XN2 Arachis hypogaea HOM05D005820 ORTHO05D007116 1.3e-89 335.1 321 53.6
PGSC0003DMG402015362 Solanum tuberosum HOM05D005820 ORTHO05D007116 3.0e-86 323.9 339 50.7
SHI15005 Sapria himalayana HOM05D005820 ORTHO05D007116 9.6e-85 318.9 298 51.0
Hma1.2p1_0419F.1_g149500 Hydrangea macrophylla HOM05D005820 ORTHO05D007116 8.1e-84 315.8 278 57.9
SalBow3G3950 Salvia bowleyana HOM05D005820 ORTHO05D007116 1.2e-82 312.0 432 42.6
AagrBONN_evm.TU.Sc2ySwM_368.2608 Anthoceros agrestis HOM05D005820 ORTHO05D007116 1.5e-82 311.6 681 31.1
Mapoly0140s0032 Marchantia polymorpha HOM05D005820 ORTHO05D007116 2.4e-80 304.3 679 32.3
SMO203G0218 Selaginella moellendorffii HOM05D005820 ORTHO05D007116 1.1e-75 288.9 682 29.5
Pp3c16_7630 Physcomitrium patens HOM05D005820 ORTHO05D007116 1.2e-63 248.8 857 26.6
MD01G1239300 Malus domestica HOM05D005820 ORTHO05D007116 3.9e-62 243.8 419 36.3
Lj3A884T58 Lonicera japonica HOM05D005820 ORTHO05D007116 4.3e-61 240.4 226 55.8
Cpa.g.sc43.140 Carica papaya HOM05D005820 ORTHO05D007116 2.1e-60 238.0 231 55.8
arahy.Tifrunner.gnm1.ann1.86ZX86 Arachis hypogaea HOM05D005820 ORTHO05D007116 1.9e-53 214.9 380 36.6
Cpa.g.sc43.143 Carica papaya HOM05D005820 ORTHO05D007116 1.4e-51 208.8 241 48.1
Ciclev10032799m.g Citrus clementina HOM05D005820 ORTHO05D007116 9.0e-51 206.1 191 57.1
PGSC0003DMG401015362 Solanum tuberosum HOM05D005820 ORTHO05D007116 2.1e-47 194.9 321 37.7
Lalb_Chr01g0000771 Lupinus albus HOM05D005820 ORTHO05D007116 1.1e-43 182.6 161 56.5
Oeu046340.1 Olea europaea HOM05D005820 ORTHO05D007116 9.1e-43 179.5 158 58.2
CBR_g52284 Chara braunii HOM05D005820 ORTHO05D007116 1.2e-42 179.1 889 22.5
arahy.Tifrunner.gnm1.ann1.CH4JFK Arachis hypogaea HOM05D005820 ORTHO05D007116 4.5e-42 177.2 649 29.7
arahy.Tifrunner.gnm1.ann1.9KL91U Arachis hypogaea HOM05D005820 ORTHO05D007116 1.1e-40 172.6 548 30.3
Lj3A884T57 Lonicera japonica HOM05D005820 ORTHO05D007116 3.6e-39 167.5 275 36.7
CAN.G824.56 Capsicum annuum HOM05D005820 ORTHO05D007116 6.1e-39 166.8 154 55.2
Oeu001352.2 Olea europaea HOM05D005820 ORTHO05D007116 2.6e-37 161.4 199 43.7
Nitab4.5_0010710g0040 Nicotiana tabacum HOM05D005820 ORTHO05D007116 1.2e-31 142.5 131 55.0
Hma1.2p1_0419F.1_g149520 Hydrangea macrophylla HOM05D005820 ORTHO05D007116 3.7e-28 131.0 137 48.9
AUR62022348 Chenopodium quinoa HOM05D005820 ORTHO05D007116 1.9e-24 118.6 101 62.4
CAN.G557.3 Capsicum annuum HOM05D005820 ORTHO05D007116 2.0e-21 108.6 151 42.4
SEGI_39455 Sequoiadendron giganteum HOM05D005820 ORTHO05D007116 2.7e-18 98.2 163 35.6
SHI15006 Sapria himalayana HOM05D005820 ORTHO05D007116 8.6e-09 66.6 176 30.7
MCO08G313 Micromonas commoda HOM05D005820 ORTHO05D007116 2.8e-07 61.6 131 32.8
CAN.G1793.2 Capsicum annuum HOM05D005820 ORTHO05D007116 3.6e-07 61.2 45 60.0
Sp6g11530 Schrenkiella parvula HOM05D001244 ORTHO05D001076 1.8e-06 58.9 129 33.3
Ah.10g032150 Amaranthus hybridus HOM05D005820 ORTHO05D007116 4.0e-06 57.8 245 24.5
CAN.G159.6 Capsicum annuum HOM05D001691 ORTHO05D007116 6.8e-06 57.0 163 29.4


User provided reference genes

Program Settings