Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB08g36680 Brassica carinata HOM05D004012 ORTHO05D004752 1.6e-255 885.6 435 100.0
C09p58260 Brassica napus HOM05D004012 ORTHO05D004752 1.1e-248 862.8 449 95.5
BolC9t58691H Brassica oleracea HOM05D004012 ORTHO05D004752 3.3e-245 851.3 451 94.5
A10p21150 Brassica napus HOM05D004012 ORTHO05D004752 4.3e-245 850.9 455 93.2
BraA10t44178Z Brassica rapa HOM05D004012 ORTHO05D004752 1.1e-243 846.3 456 93.0
Sp6g25900 Schrenkiella parvula HOM05D004012 ORTHO05D004752 5.7e-229 797.3 435 89.2
Thhalv10013606m.g Eutrema salsugineum HOM05D004012 ORTHO05D004752 2.6e-226 788.5 431 88.9
BraA03t10211Z Brassica rapa HOM05D004012 ORTHO05D004752 9.4e-216 753.4 454 82.6
BolC3t13514H Brassica oleracea HOM05D004012 ORTHO05D004752 1.6e-215 752.7 454 82.8
CARHR194600 Cardamine hirsuta HOM05D004012 ORTHO05D004752 8.2e-212 740.3 439 84.1
Carub.0006s1668 Capsella rubella HOM05D004012 ORTHO05D004752 1.8e-211 739.2 436 82.6
AT5G18420 Arabidopsis thaliana HOM05D004012 ORTHO05D004752 8.5e-209 730.3 434 81.3
Aa31LG11G11210 Aethionema arabicum HOM05D004012 ORTHO05D004752 3.1e-203 711.8 454 76.9
C03p10330 Brassica napus HOM05D004012 ORTHO05D004752 5.2e-198 694.5 423 81.3
AL6G29670 Arabidopsis lyrata HOM05D004012 ORTHO05D004752 2.2e-196 689.1 383 87.2
BcaC04g18693 Brassica carinata HOM05D004012 ORTHO05D004752 6.2e-167 591.3 439 75.2
CiPaw.15G186100 Carya illinoinensis HOM05D004012 ORTHO05D004752 7.3e-160 567.8 433 63.3
THA.LOC104806688 Tarenaya hassleriana HOM05D004012 ORTHO05D004752 9.5e-160 567.4 435 65.7
Manes.13G154600 Manihot esculenta HOM05D004012 ORTHO05D004752 3.6e-159 565.5 435 64.8
Prupe.5G058000 Prunus persica HOM05D004012 ORTHO05D004752 2.4e-158 562.8 437 64.1
Hma1.2p1_3052F.1_g332140 Hydrangea macrophylla HOM05D004012 ORTHO05D004752 3.1e-158 562.4 434 63.6
Gohir.D10G106700 Gossypium hirsutum HOM05D004012 ORTHO05D004752 1.2e-157 560.5 435 64.6
Gorai.011G116800 Gossypium raimondii HOM05D004012 ORTHO05D004752 1.2e-157 560.5 435 64.6
Hma1.2p1_0513F.1_g169610 Hydrangea macrophylla HOM05D004012 ORTHO05D004752 2.6e-157 559.3 434 63.4
Atru.chr3.1437 Acer truncatum HOM05D004012 ORTHO05D004752 3.4e-157 558.9 433 64.0
Dinv19127 Davidia involucrata HOM05D004012 ORTHO05D004752 4.4e-157 558.5 436 63.3
Gohir.A10G084900 Gossypium hirsutum HOM05D004012 ORTHO05D004752 4.4e-157 558.5 435 64.4
Potri.017G122600 Populus trichocarpa HOM05D004012 ORTHO05D004752 1.3e-156 557.0 435 63.2
FvH4_5g20280 Fragaria vesca HOM05D004012 ORTHO05D004752 2.9e-156 555.8 437 62.9
MD04G1052500 Malus domestica HOM05D004012 ORTHO05D004752 2.9e-156 555.8 438 63.9
RcHm_v2.0_Chr7g0205341 Rosa chinensis HOM05D004012 ORTHO05D004752 4.9e-156 555.1 437 62.9
FAN08G1522 Fragaria x ananassa HOM05D004012 ORTHO05D004752 1.9e-155 553.1 437 62.9
FAN18G2241 Fragaria x ananassa HOM05D004012 ORTHO05D004752 2.4e-155 552.7 437 62.5
Lj6g0017875 Lotus japonicus HOM05D004012 ORTHO05D004752 9.2e-155 550.8 430 62.3
MD06G1047700 Malus domestica HOM05D004012 ORTHO05D004752 1.6e-154 550.1 438 63.7
CSS0025733 Camellia sinensis var. sinensis HOM05D004012 ORTHO05D004752 2.1e-154 549.7 431 62.9
FAN04G0350 Fragaria x ananassa HOM05D004012 ORTHO05D004752 6.0e-154 548.1 437 62.2
Dinv26833 Davidia involucrata HOM05D004012 ORTHO05D004752 3.9e-153 545.4 440 62.3
CANSAT54G0087 Cannabis sativa HOM05D004012 ORTHO05D004752 1.5e-152 543.5 438 62.3
Lalb_Chr03g0037441 Lupinus albus HOM05D004012 ORTHO05D004752 1.5e-152 543.5 430 62.1
Lalb_Chr19g0127941 Lupinus albus HOM05D004012 ORTHO05D004752 4.3e-152 542.0 430 62.8
HanXRQChr13g0402671 Helianthus annuus HOM05D004012 ORTHO05D004752 7.3e-152 541.2 430 62.8
Glyma.02G005000 Glycine max HOM05D004012 ORTHO05D004752 1.3e-151 540.4 430 61.6
MELO3C023211.2 Cucumis melo HOM05D004012 ORTHO05D004752 4.8e-151 538.5 436 61.0
TWI31G0701 Tripterygium wilfordii HOM05D004012 ORTHO05D004752 1.8e-150 536.6 434 60.8
CsaV3_2G019600 Cucumis sativus L. HOM05D004012 ORTHO05D004752 4.0e-150 535.4 436 61.0
Lalb_Chr01g0020921 Lupinus albus HOM05D004012 ORTHO05D004752 6.9e-150 534.6 430 61.2
GSVIVG01000257001 Vitis vinifera HOM05D004012 ORTHO05D004752 9.0e-150 534.3 409 63.8
Nn5g27391 Nelumbo nucifera HOM05D004012 ORTHO05D004752 1.2e-149 533.9 434 60.1
ECA238G2948 Erigeron canadensis HOM05D004012 ORTHO05D004752 2.0e-149 533.1 433 61.2
Sc16g0009950 Simmondsia chinensis HOM05D004012 ORTHO05D004752 2.6e-149 532.7 433 59.6
Eucgr.I00032 Eucalyptus grandis HOM05D004012 ORTHO05D004752 3.4e-149 532.3 429 60.8
PGR119G2008 Punica granatum HOM05D004012 ORTHO05D004752 3.4e-149 532.3 432 59.5
Phvul.007G277800 Phaseolus vulgaris HOM05D004012 ORTHO05D004752 4.4e-149 531.9 430 60.9
AUR62000581 Chenopodium quinoa HOM05D004012 ORTHO05D004752 9.9e-149 530.8 433 60.5
VMungo0720G3057 Vigna mungo HOM05D004012 ORTHO05D004752 9.9e-149 530.8 433 60.0
Sopen04g017040 Solanum pennellii HOM05D004012 ORTHO05D004752 1.3e-148 530.4 434 62.2
ClCG02G000230 Citrullus lanatus HOM05D004012 ORTHO05D004752 2.2e-148 529.6 448 59.6
AUR62006937 Chenopodium quinoa HOM05D004012 ORTHO05D004752 4.9e-148 528.5 433 60.5
MSTRG.9397 Avicennia marina HOM05D004012 ORTHO05D004752 1.9e-147 526.6 436 60.1
Rhsim01G0147700 Rhododendron simsii HOM05D004012 ORTHO05D004752 2.4e-147 526.2 459 59.3
Aqoxy5G01862 Aquilegia oxysepala HOM05D004012 ORTHO05D004752 3.2e-147 525.8 434 59.7
SalBow1G0131 Salvia bowleyana HOM05D004012 ORTHO05D004752 1.0e-145 520.8 418 62.4
CAN.G10.8 Capsicum annuum HOM05D004012 ORTHO05D004752 1.3e-145 520.4 434 61.8
Ca_12160_v3 Cicer arietinum L. HOM05D004012 ORTHO05D004752 1.7e-145 520.0 433 58.7
Hund07194 Selenicereus undatus HOM05D004012 ORTHO05D004752 3.0e-145 519.2 433 59.8
TAR628G1247 Trochodendron aralioides HOM05D004012 ORTHO05D004752 1.1e-144 517.3 464 55.6
Medtr1g041405 Medicago truncatula HOM05D004012 ORTHO05D004752 1.6e-143 513.5 452 56.6
Migut.D01135 Erythranthe guttata HOM05D004012 ORTHO05D004752 2.8e-143 512.7 418 60.3
CDE05G2224 Ceratophyllum demersum HOM05D004012 ORTHO05D004752 6.2e-143 511.5 432 59.7
MBI10_g20270_MAGBIO Magnolia biondii HOM05D004012 ORTHO05D004752 1.1e-142 510.8 434 59.0
Oeu034405.1 Olea europaea HOM05D004012 ORTHO05D004752 1.1e-142 510.8 424 61.6
Sed0016932 Sechium edule HOM05D004012 ORTHO05D004752 3.1e-142 509.2 438 59.6
Psat6g104000 Pisum sativum HOM05D004012 ORTHO05D004752 6.9e-142 508.1 453 55.8
Cc07_g20580 Coffea canephora HOM05D004012 ORTHO05D004752 4.5e-141 505.4 389 65.6
MSTRG.4671 Avicennia marina HOM05D004012 ORTHO05D004752 3.2e-139 499.2 437 57.4
arahy.Tifrunner.gnm1.ann1.5Q2P9B Arachis hypogaea HOM05D004012 ORTHO05D004752 2.1e-138 496.5 433 56.8
arahy.Tifrunner.gnm1.ann1.EZQ64B Arachis hypogaea HOM05D004012 ORTHO05D004752 2.1e-138 496.5 433 56.8
Potri.004G092400 Populus trichocarpa HOM05D004012 ORTHO05D004752 1.0e-137 494.2 403 61.0
EL10Ac4g09708 Beta vulgaris HOM05D004012 ORTHO05D004752 5.1e-137 491.9 434 58.8
TPR.G25177 Trifolium pratense HOM05D004012 ORTHO05D004752 1.1e-136 490.7 447 55.9
unitig_0.g354 Utricularia gibba HOM05D004012 ORTHO05D004752 1.5e-136 490.3 435 57.2
Cc07_g20480 Coffea canephora HOM05D004012 ORTHO05D004752 2.5e-136 489.6 390 65.4
ATR1089G159 Amborella trichopoda HOM05D004012 ORTHO05D004752 1.1e-134 484.2 439 56.0
Glyma.10G003500 Glycine max HOM05D004012 ORTHO05D004752 1.1e-134 484.2 400 58.5
Lsat_1_v5_gn_0_9061 Lactuca sativa HOM05D004012 ORTHO05D004752 1.1e-134 484.2 430 58.4
Duzib147G1077 Durio zibethinus HOM05D004012 ORTHO05D004752 5.3e-134 481.9 439 59.0
Sabra04G0062100 Salix brachista HOM05D004012 ORTHO05D004752 7.6e-133 478.0 444 55.4
TWI79G0644 Tripterygium wilfordii HOM05D004012 ORTHO05D004752 1.6e-130 470.3 434 56.0
CDE05G3168 Ceratophyllum demersum HOM05D004012 ORTHO05D004752 2.1e-130 469.9 439 56.5
DCAR_009624 Daucus carota HOM05D004012 ORTHO05D004752 2.3e-129 466.5 437 55.4
vmacro21003 Vaccinium macrocarpon HOM05D004012 ORTHO05D004752 4.3e-128 462.2 420 57.9
Thecc.01G145600 Theobroma cacao HOM05D004012 ORTHO05D004752 4.5e-125 452.2 378 59.5
Eucgr.I00085 Eucalyptus grandis HOM05D004012 ORTHO05D004752 1.0e-124 451.1 382 57.6
Ciclev10005092m.g Citrus clementina HOM05D004012 ORTHO05D004752 1.3e-124 450.7 359 59.9
PSO210G3799 Papaver somniferum HOM05D004012 ORTHO05D004752 8.4e-124 448.0 434 53.5
PSO761G0211 Papaver somniferum HOM05D004012 ORTHO05D004752 8.4e-124 448.0 434 53.9
Mapoly0005s0018 Marchantia polymorpha HOM05D004012 ORTHO05D004752 2.5e-123 446.4 433 54.0
SGA_v2.0_scaffold14G07064 Striga asiatica HOM05D004012 ORTHO05D004752 4.2e-123 445.7 438 52.5
Duzib187G0370 Durio zibethinus HOM05D004012 ORTHO05D004752 7.9e-122 441.4 320 67.2
Lsat_1_v5_gn_5_118080 Lactuca sativa HOM05D004012 ORTHO05D004752 3.9e-121 439.1 433 53.8
Duzib264G1318 Durio zibethinus HOM05D004012 ORTHO05D004752 1.9e-120 436.8 345 64.1
Sabra17G0101400 Salix brachista HOM05D004012 ORTHO05D004752 7.4e-120 434.9 395 55.9
Sabra17G0104000 Salix brachista HOM05D004012 ORTHO05D004752 7.4e-120 434.9 395 55.9
HPP92_005635 Vanilla planifolia HOM05D004012 ORTHO05D004752 3.4e-117 426.0 350 61.4
Pp3c24_6950 Physcomitrium patens HOM05D004012 ORTHO05D004752 1.4e-115 420.6 428 51.4
TAR376G0099 Trochodendron aralioides HOM05D004012 ORTHO05D004752 1.4e-115 420.6 383 56.1
Actinidia30855 Actinidia chinensis HOM05D004012 ORTHO05D004752 1.9e-115 420.2 435 52.9
Pp3c20_12330 Physcomitrium patens HOM05D004012 ORTHO05D004752 1.2e-114 417.5 428 51.2
MBI06_g32154_MAGBIO Magnolia biondii HOM05D004012 ORTHO05D004752 7.9e-114 414.8 400 52.2
Os11g0240900 Oryza sativa ssp. japonica HOM05D004012 ORTHO05D004752 3.3e-112 409.5 435 50.8
Zm00001eb112220 Zea mays HOM05D004012 ORTHO05D004752 2.8e-111 406.4 437 51.5
Actinidia12239 Actinidia chinensis HOM05D004012 ORTHO05D004752 5.3e-110 402.1 308 63.0
CBR_g22449 Chara braunii HOM05D004012 ORTHO05D004752 9.1e-110 401.4 432 50.2
Lj4A823T24 Lonicera japonica HOM05D004012 ORTHO05D004752 1.9e-107 393.7 300 64.7
Zm00001eb167940 Zea mays HOM05D004012 ORTHO05D004752 5.5e-107 392.1 431 50.8
Actinidia14359 Actinidia chinensis HOM05D004012 ORTHO05D004752 2.1e-106 390.2 467 46.5
FAN13G1241 Fragaria x ananassa HOM05D004012 ORTHO05D004752 9.1e-102 374.8 332 53.6
Pp3c23_1780 Physcomitrium patens HOM05D004012 ORTHO05D004752 1.0e-100 371.3 353 54.1
Ah.02g118090 Amaranthus hybridus HOM05D004012 ORTHO05D004752 2.2e-100 370.2 385 48.8
SMO196G0070 Selaginella moellendorffii HOM05D004012 ORTHO05D004752 4.7e-90 335.9 282 58.2
DCAR_019944 Daucus carota HOM05D004012 ORTHO05D004752 1.2e-85 321.2 322 51.6
Nitab4.5_0000064g0090 Nicotiana tabacum HOM05D004012 ORTHO05D004752 7.0e-78 295.4 278 52.9
AagrBONN_evm.TU.Sc2ySwM_228.2915 Anthoceros agrestis HOM05D004012 ORTHO05D004752 1.7e-76 290.8 328 43.0
Peaxi162Scf00621g00412 Petunia axillaris HOM05D004012 ORTHO05D004752 2.9e-76 290.0 284 51.8
Solyc04g024500.3 Solanum lycopersicum HOM05D004012 ORTHO05D004752 1.2e-74 284.6 278 51.4
PGSC0003DMG401004242 Solanum tuberosum HOM05D004012 ORTHO05D004752 1.6e-74 284.3 278 51.8
Cpa.g.sc138.55 Carica papaya HOM05D004012 ORTHO05D004752 1.8e-73 280.8 230 57.4
Cc07_g20540 Coffea canephora HOM05D004012 ORTHO05D004752 5.2e-73 279.3 351 42.5
Nitab4.5_0005261g0010 Nicotiana tabacum HOM05D004012 ORTHO05D004752 2.4e-70 270.4 278 50.4
Oeu036288.1 Olea europaea HOM05D004012 ORTHO05D004752 4.1e-70 269.6 274 49.6
Haze_19373 Corylus avellana HOM05D004012 ORTHO05D004752 1.9e-67 260.8 158 83.5
Nitab4.5_0000064g0100 Nicotiana tabacum HOM05D004012 ORTHO05D004752 8.9e-65 251.9 178 74.2
Solyc04g024510.3 Solanum lycopersicum HOM05D004012 ORTHO05D004752 1.2e-64 251.5 158 81.0
Nitab4.5_0005261g0020 Nicotiana tabacum HOM05D004012 ORTHO05D004752 1.5e-64 251.1 171 76.0
Peaxi162Scf00621g00413 Petunia axillaris HOM05D004012 ORTHO05D004752 2.9e-63 246.9 151 83.4
SEGI_14103 Sequoiadendron giganteum HOM05D004012 ORTHO05D004752 7.8e-61 238.8 157 77.1
THA.LOC104799828 Tarenaya hassleriana HOM05D004012 ORTHO05D004752 1.1e-59 235.0 185 68.6
BcaNung06869 Brassica carinata HOM05D004012 ORTHO05D004752 3.6e-58 229.9 132 91.7
Lju41A56G29 Lonicera japonica HOM05D004012 ORTHO05D004752 1.4e-57 228.0 342 37.4
Cre17.g726800 Chlamydomonas reinhardtii HOM05D004012 ORTHO05D004752 1.2e-56 224.9 499 35.1
Os12g0197900 Oryza sativa ssp. japonica HOM05D004012 ORTHO05D004752 7.5e-56 222.2 142 79.6
HPP92_005645 Vanilla planifolia HOM05D004012 ORTHO05D004752 3.7e-55 219.9 146 76.7
Zm00001eb138450 Zea mays HOM05D004012 ORTHO05D004752 1.4e-54 218.0 286 40.2
PGSC0003DMG402004242 Solanum tuberosum HOM05D004012 ORTHO05D004752 3.9e-52 209.9 134 81.3
Ah.06g188310 Amaranthus hybridus HOM05D004012 ORTHO05D004752 8.1e-50 202.2 192 50.0
QL10p034897 Quercus lobata HOM05D004012 ORTHO05D004752 1.3e-47 194.9 162 53.7
Lsat_1_v5_gn_2_19540 Lactuca sativa HOM05D004012 ORTHO05D004752 2.1e-45 187.6 183 55.7
HPP92_005646 Vanilla planifolia HOM05D004012 ORTHO05D004752 1.3e-44 184.9 231 42.4
TPR.G34339 Trifolium pratense HOM05D004012 ORTHO05D004752 1.7e-44 184.5 465 30.5
DCAR_015558 Daucus carota HOM05D004012 ORTHO05D004752 1.5e-43 181.4 118 76.3
Cpa.g.sc138.54 Carica papaya HOM05D004012 ORTHO05D004752 1.4e-41 174.9 100 91.0
SHI03103 Sapria himalayana HOM05D004012 ORTHO05D004752 1.2e-37 161.8 177 54.8
SHI03102 Sapria himalayana HOM05D004012 ORTHO05D004752 1.0e-36 158.7 155 49.0
QL10p034885 Quercus lobata HOM05D004012 ORTHO05D000004 3.0e-36 157.1 106 74.5
HPP92_005679 Vanilla planifolia HOM05D004012 ORTHO05D004752 7.3e-35 152.5 305 34.4
Haze_27454 Corylus avellana HOM05D004012 ORTHO05D004752 3.8e-31 140.2 130 56.9
QL10p034900 Quercus lobata HOM05D004012 ORTHO05D004752 1.6e-26 124.8 117 50.4
A03p08840 Brassica napus HOM05D004012 ORTHO05D004752 8.1e-26 122.5 68 92.6
Lju41A56T30 Lonicera japonica HOM05D004012 ORTHO05D004752 4.0e-25 120.2 142 48.6
MCO14G229 Micromonas commoda HOM05D004012 ORTHO05D004752 1.3e-23 115.2 247 32.4
Ciclev10006318m.g Citrus clementina HOM05D004012 ORTHO05D004752 7.9e-21 105.9 58 93.1
Oeu046377.1 Olea europaea HOM05D004012 ORTHO05D004752 2.8e-18 97.4 56 89.3
BraA07t29344Z Brassica rapa HOM05D004012 ORTHO05D004752 1.8e-17 94.7 56 76.8
BraA03t15035Z Brassica rapa HOM05D004012 ORTHO05D004752 3.1e-17 94.0 50 84.0
Actinidia12240 Actinidia chinensis HOM05D004012 ORTHO05D004752 1.2e-16 92.0 98 45.9
PRCOL_00001851 Prasinoderma coloniale HOM05D004012 ORTHO05D004752 1.2e-16 92.0 243 30.0
PSO761G0569 Papaver somniferum HOM05D004012 ORTHO05D004752 5.7e-11 73.2 57 61.4
VMungo0647G1024 Vigna mungo HOM05D004443 ORTHO05D005421 6.9e-09 66.2 68 41.2


User provided reference genes

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