Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB08g36508 Brassica carinata HOM05D001738 ORTHO05D001644 3.1e-37 157.9 77 100.0
C09p55670 Brassica napus HOM05D001738 ORTHO05D001644 5.7e-23 110.5 77 77.9
A10p19450 Brassica napus HOM05D001738 ORTHO05D001644 1.6e-17 92.4 60 76.7
BcaC09g48787 Brassica carinata HOM05D001738 ORTHO05D001644 1.0e-16 89.7 60 71.7
C01p46040 Brassica napus HOM05D001738 ORTHO05D001644 1.0e-16 89.7 60 71.7
BolC1t04554H Brassica oleracea HOM05D001738 ORTHO05D001644 1.0e-16 89.7 60 71.7
A01p36040 Brassica napus HOM05D001738 ORTHO05D001644 2.3e-16 88.6 60 71.7
BraA01t03683Z Brassica rapa HOM05D001738 ORTHO05D001644 2.3e-16 88.6 60 71.7
A01p36210 Brassica napus HOM05D001738 ORTHO05D001644 3.9e-16 87.8 60 71.7
AL1G25470 Arabidopsis lyrata HOM05D001738 ORTHO05D001644 1.5e-15 85.9 63 65.1
BraA01t03696Z Brassica rapa HOM05D001738 ORTHO05D001644 1.5e-15 85.9 60 70.0
Carub.0001s1342 Capsella rubella HOM05D001738 ORTHO05D001644 1.9e-15 85.5 63 66.7
BolC3t20600H Brassica oleracea HOM05D001738 ORTHO05D001644 9.7e-15 83.2 66 54.5
A08p15080 Brassica napus HOM05D001738 ORTHO05D001644 1.3e-14 82.8 66 53.0
BraA08t33488Z Brassica rapa HOM05D001738 ORTHO05D001644 1.3e-14 82.8 66 53.0
Thhalv10010027m.g Eutrema salsugineum HOM05D001738 ORTHO05D001644 1.3e-14 82.8 69 58.0
BcaC04g19443 Brassica carinata HOM05D001738 ORTHO05D001644 2.2e-14 82.0 60 75.0
BcaB03g11687 Brassica carinata HOM05D001738 ORTHO05D001644 6.3e-14 80.5 64 56.2
BcaNung06201 Brassica carinata HOM05D001738 ORTHO05D001644 6.3e-14 80.5 74 55.4
C08p48460 Brassica napus HOM05D001738 ORTHO05D001644 6.3e-14 80.5 74 55.4
AL1G23150 Arabidopsis lyrata HOM05D001738 ORTHO05D001644 1.1e-13 79.7 63 61.9
AL1G22300 Arabidopsis lyrata HOM05D001738 ORTHO05D001644 1.4e-13 79.3 58 65.5
BolC8t52365H Brassica oleracea HOM05D001738 ORTHO05D001644 1.8e-13 79.0 58 63.8
AL5G16800 Arabidopsis lyrata HOM05D001738 ORTHO05D001644 3.1e-13 78.2 60 61.7
AL4G18870 Arabidopsis lyrata HOM05D001738 ORTHO05D001644 4.1e-13 77.8 76 51.3
BcaNung02775 Brassica carinata HOM05D001738 ORTHO05D001644 4.1e-13 77.8 74 52.7
BcaB08g37391 Brassica carinata HOM05D001738 ORTHO05D001644 6.9e-13 77.0 64 59.4
AT1G11270 Arabidopsis thaliana HOM05D001738 ORTHO05D001644 9.1e-13 76.6 64 54.7
Thhalv10000283m.g Eutrema salsugineum HOM05D001738 ORTHO05D001644 2.6e-12 75.1 59 59.3
Carub.0345s0001 Capsella rubella HOM05D001738 ORTHO05D001644 3.4e-12 74.7 70 51.4
Thhalv10009680m.g Eutrema salsugineum HOM05D001738 ORTHO05D001644 3.4e-12 74.7 67 55.2
AL1G22320 Arabidopsis lyrata HOM05D001738 ORTHO05D001644 5.9e-12 73.9 60 60.0
Sp1g27610 Schrenkiella parvula HOM05D001738 ORTHO05D001644 1.0e-11 73.2 67 52.2
A01p12930 Brassica napus HOM05D001738 ORTHO05D001644 1.3e-11 72.8 68 48.5
BraA01t01237Z Brassica rapa HOM05D001738 ORTHO05D001644 1.3e-11 72.8 68 48.5
BcaB08g36707 Brassica carinata HOM05D001738 ORTHO05D001644 1.7e-11 72.4 69 53.6
BcaNung02774 Brassica carinata HOM05D001541 ORTHO05D001644 1.7e-11 72.4 54 61.1
AL5G25310 Arabidopsis lyrata HOM05D001738 ORTHO05D001644 2.2e-11 72.0 67 52.2
BcaC01g01546 Brassica carinata HOM05D001738 ORTHO05D001644 6.5e-11 70.5 66 56.1
CARHR011460 Cardamine hirsuta HOM05D001738 ORTHO05D001644 6.5e-11 70.5 69 50.7
BcaC04g18725 Brassica carinata HOM05D001738 ORTHO05D001644 1.1e-10 69.7 69 53.6
AL7G46450 Arabidopsis lyrata HOM05D000626 ORTHO05D001644 1.4e-10 69.3 57 57.9
BraA10t44022Z Brassica rapa HOM05D001738 ORTHO05D001644 1.4e-10 69.3 47 74.5
A09p64740 Brassica napus HOM05D001738 ORTHO05D001644 1.9e-10 68.9 74 50.0
A10p21580 Brassica napus HOM05D001738 ORTHO05D001644 1.9e-10 68.9 65 55.4
BraA10t44220Z Brassica rapa HOM05D001738 ORTHO05D001644 1.9e-10 68.9 65 55.4
BcaNung02915 Brassica carinata HOM05D001738 ORTHO05D001644 2.5e-10 68.6 74 50.0
BcaC07g37559 Brassica carinata HOM05D001738 ORTHO05D001644 3.2e-10 68.2 49 69.4
BolC8t47900H Brassica oleracea HOM05D001738 ORTHO05D001644 3.2e-10 68.2 49 69.4
BolC3t21603H Brassica oleracea HOM05D001738 ORTHO05D001644 4.2e-10 67.8 65 53.8
CARHR119930 Cardamine hirsuta HOM05D001738 ORTHO05D001644 4.2e-10 67.8 58 53.4
CARHR292150 Cardamine hirsuta HOM05D001738 ORTHO05D001644 4.2e-10 67.8 59 50.8
Thhalv10028258m.g Eutrema salsugineum HOM05D001738 ORTHO05D001644 4.2e-10 67.8 56 60.7
BcaB04g18150 Brassica carinata HOM05D001738 ORTHO05D001644 7.2e-10 67.0 66 51.5
BcaB04g18152 Brassica carinata HOM05D001738 ORTHO05D001644 7.2e-10 67.0 66 51.5
Thhalv10003053m.g Eutrema salsugineum HOM05D001738 ORTHO05D001644 9.4e-10 66.6 58 53.4
AL8G23030 Arabidopsis lyrata HOM05D001738 ORTHO05D001644 1.2e-09 66.2 63 57.1
AL1G37130 Arabidopsis lyrata HOM05D001738 ORTHO05D001644 1.6e-09 65.9 60 53.3
CARHR125660 Cardamine hirsuta HOM05D001738 ORTHO05D001644 1.6e-09 65.9 66 47.0
Thhalv10017550m.g Eutrema salsugineum HOM05D001738 ORTHO05D001644 1.6e-09 65.9 58 56.9
AL4G30220 Arabidopsis lyrata HOM05D001738 ORTHO05D001644 2.1e-09 65.5 66 47.0
BcaB07g30292 Brassica carinata HOM05D001738 ORTHO05D001644 3.6e-09 64.7 57 57.9
BcaC04g20153 Brassica carinata HOM05D001738 ORTHO05D001644 4.6e-09 64.3 70 48.6
A09p64540 Brassica napus HOM05D001738 ORTHO05D001644 4.6e-09 64.3 58 53.4
C04p12640 Brassica napus HOM05D001738 ORTHO05D001644 4.6e-09 64.3 70 48.6
BraA09t41803Z Brassica rapa HOM05D001738 ORTHO05D001644 4.6e-09 64.3 58 53.4
BraA09t41808Z Brassica rapa HOM05D001738 ORTHO05D001644 4.6e-09 64.3 58 53.4
Aa31sc18G20 Aethionema arabicum HOM05D001738 ORTHO05D001644 6.1e-09 63.9 59 50.8
A09p64530 Brassica napus HOM05D001738 ORTHO05D001644 6.1e-09 63.9 58 53.4
A09p64880 Brassica napus HOM05D001738 ORTHO05D001644 6.1e-09 63.9 58 53.4
C02p51750 Brassica napus HOM05D001738 ORTHO05D001644 6.1e-09 63.9 64 48.4
BraA09t41802Z Brassica rapa HOM05D001738 ORTHO05D001644 6.1e-09 63.9 58 53.4
Aa31LG8G6310 Aethionema arabicum HOM05D001738 ORTHO05D001644 7.9e-09 63.5 58 53.4
Thhalv10007821m.g Eutrema salsugineum HOM05D001738 ORTHO05D001644 1.0e-08 63.2 62 50.0
Thhalv10028312m.g Eutrema salsugineum HOM05D001738 ORTHO05D001644 1.0e-08 63.2 57 54.4
AL1G20200 Arabidopsis lyrata HOM05D001738 ORTHO05D001644 1.4e-08 62.8 58 53.4
A09p64890 Brassica napus HOM05D001738 ORTHO05D001644 1.8e-08 62.4 58 51.7
Thhalv10009459m.g Eutrema salsugineum HOM05D001738 ORTHO05D001644 1.8e-08 62.4 62 46.8
AT1G15015 Arabidopsis thaliana HOM05D001738 ORTHO05D001644 2.3e-08 62.0 56 51.8
AT1G09650 Arabidopsis thaliana HOM05D001738 ORTHO05D001644 3.0e-08 61.6 75 42.7
A02p32990 Brassica napus HOM05D001738 ORTHO05D001644 3.0e-08 61.6 57 54.4
BraA02t08324Z Brassica rapa HOM05D001738 ORTHO05D001644 3.0e-08 61.6 57 54.4
Carub.0008s0923 Capsella rubella HOM05D001738 ORTHO05D001644 3.0e-08 61.6 58 51.7
CARHR211720 Cardamine hirsuta HOM05D001738 ORTHO05D001644 3.0e-08 61.6 74 41.9
AL1G43860 Arabidopsis lyrata HOM05D001738 ORTHO05D001644 3.9e-08 61.2 63 47.6
C08p16640 Brassica napus HOM05D001738 ORTHO05D001644 3.9e-08 61.2 70 42.9
Thhalv10009873m.g Eutrema salsugineum HOM05D001738 ORTHO05D001644 3.9e-08 61.2 62 46.8
Aa31LG8G6340 Aethionema arabicum HOM05D001738 ORTHO05D001644 6.7e-08 60.5 63 41.3
AT2G34280 Arabidopsis thaliana HOM05D001738 ORTHO05D001644 8.8e-08 60.1 62 46.8
AL6G27180 Arabidopsis lyrata HOM05D001738 ORTHO05D001644 1.1e-07 59.7 65 44.6
A08p31980 Brassica napus HOM05D001738 ORTHO05D001644 1.1e-07 59.7 60 50.0
Thhalv10017844m.g Eutrema salsugineum HOM05D001738 ORTHO05D001644 1.1e-07 59.7 72 45.8
Aa31LG8G6350 Aethionema arabicum HOM05D001738 ORTHO05D001644 2.0e-07 58.9 68 41.2
Carub.0006s0880 Capsella rubella HOM05D001738 ORTHO05D001644 2.0e-07 58.9 62 51.6
BcaB03g13098 Brassica carinata HOM05D001738 ORTHO05D001644 2.6e-07 58.5 59 42.4
Carub.0001s2401 Capsella rubella HOM05D001738 ORTHO05D001644 2.6e-07 58.5 60 48.3
BcaC04g21963 Brassica carinata HOM05D001738 ORTHO05D001644 3.3e-07 58.2 53 49.1
C02p51740 Brassica napus HOM05D001738 ORTHO05D001644 3.3e-07 58.2 58 51.7
C03p92980 Brassica napus HOM05D001738 ORTHO05D001644 3.3e-07 58.2 57 52.6
BolC2t06345H Brassica oleracea HOM05D001738 ORTHO05D001644 3.3e-07 58.2 53 49.1
CARHR124000 Cardamine hirsuta HOM05D001738 ORTHO05D001644 3.3e-07 58.2 66 42.4
CARHR125670 Cardamine hirsuta HOM05D001738 ORTHO05D001644 4.4e-07 57.8 58 48.3
Thhalv10016004m.g Eutrema salsugineum HOM05D001738 ORTHO05D001644 4.4e-07 57.8 57 47.4
Sp1g29020 Schrenkiella parvula HOM05D001738 ORTHO05D011550 4.4e-07 57.8 43 60.5
BolC2t11259H Brassica oleracea HOM05D001738 ORTHO05D001644 7.4e-07 57.0 58 50.0
Carub.0001s1404 Capsella rubella HOM05D001738 ORTHO05D001644 7.4e-07 57.0 56 50.0
Thhalv10011073m.g Eutrema salsugineum HOM05D001738 ORTHO05D001644 7.4e-07 57.0 56 53.6
BcaB07g32397 Brassica carinata HOM05D001738 ORTHO05D001644 9.7e-07 56.6 60 46.7
BcaC01g00689 Brassica carinata HOM05D001738 ORTHO05D001644 9.7e-07 56.6 58 44.8
BcaC03g13251 Brassica carinata HOM05D001738 ORTHO05D001644 9.7e-07 56.6 51 49.0
C02p03830 Brassica napus HOM05D001738 ORTHO05D001644 9.7e-07 56.6 51 49.0
Glyma.09G010600 Glycine max HOM05D000007 ORTHO05D000017 9.7e-07 56.6 61 50.8
AL5G38790 Arabidopsis lyrata HOM05D001738 ORTHO05D001644 1.3e-06 56.2 57 45.6
AT5G16285 Arabidopsis thaliana HOM05D001738 ORTHO05D001644 1.3e-06 56.2 63 42.9
BcaB07g33225 Brassica carinata HOM05D001738 ORTHO05D001644 1.7e-06 55.8 51 52.9
BolC5t31053H Brassica oleracea HOM05D001738 ORTHO05D001644 1.7e-06 55.8 59 49.2
Carub.0005s2405 Capsella rubella HOM05D001738 ORTHO05D001644 1.7e-06 55.8 57 43.9
CARHR015520 Cardamine hirsuta HOM05D001738 ORTHO05D001644 1.7e-06 55.8 63 44.4
AL5G38780 Arabidopsis lyrata HOM05D001738 ORTHO05D001644 2.2e-06 55.5 57 47.4
Carub.0006s1692 Capsella rubella HOM05D001738 ORTHO05D001644 2.2e-06 55.5 62 43.5
CARHR008650 Cardamine hirsuta HOM05D001738 ORTHO05D001644 2.2e-06 55.5 55 50.9
CARHR024930 Cardamine hirsuta HOM05D001738 ORTHO05D001644 2.2e-06 55.5 54 48.1
AT1G14315 Arabidopsis thaliana HOM05D001738 ORTHO05D001644 2.8e-06 55.1 44 63.6
C09p25430 Brassica napus HOM05D001738 ORTHO05D001644 2.8e-06 55.1 53 45.3
BolC9t55443H Brassica oleracea HOM05D001738 ORTHO05D001644 2.8e-06 55.1 53 45.3
Aa31LG8G6370 Aethionema arabicum HOM05D001738 ORTHO05D001644 3.7e-06 54.7 58 46.6
BcaC02g07509 Brassica carinata HOM05D001738 ORTHO05D001644 3.7e-06 54.7 63 46.0
BcaNung02452 Brassica carinata HOM05D001738 ORTHO05D001644 3.7e-06 54.7 61 42.6
BolC4t28107H Brassica oleracea HOM05D001738 ORTHO05D001644 3.7e-06 54.7 63 46.0
BraA08t35119Z Brassica rapa HOM05D001738 ORTHO05D001644 3.7e-06 54.7 57 47.4
Thhalv10007816m.g Eutrema salsugineum HOM05D001738 ORTHO05D001644 3.7e-06 54.7 57 43.9
AT1G12870 Arabidopsis thaliana HOM05D001738 ORTHO05D001644 4.8e-06 54.3 59 45.8
BcaC05g25187 Brassica carinata HOM05D001738 ORTHO05D001644 4.8e-06 54.3 44 59.1
C04p66030 Brassica napus HOM05D001738 ORTHO05D001644 4.8e-06 54.3 63 46.0
C07p40890 Brassica napus HOM05D001738 ORTHO05D001644 4.8e-06 54.3 61 42.6
BolC7t44617H Brassica oleracea HOM05D001738 ORTHO05D001644 4.8e-06 54.3 61 42.6
Sp1g28950 Schrenkiella parvula HOM05D001738 ORTHO05D000001 4.8e-06 54.3 48 54.2
Aa31LG4G13090 Aethionema arabicum HOM05D001738 ORTHO05D001644 6.3e-06 53.9 59 45.8
AT1G12855 Arabidopsis thaliana HOM05D001738 ORTHO05D001644 6.3e-06 53.9 59 40.7
A04p28700 Brassica napus HOM05D001738 ORTHO05D001644 6.3e-06 53.9 55 50.9
A04p28750 Brassica napus HOM05D001738 ORTHO05D001644 6.3e-06 53.9 55 50.9
BraA04t18347Z Brassica rapa HOM05D001738 ORTHO05D001644 6.3e-06 53.9 55 50.9
BraA04t18351Z Brassica rapa HOM05D001738 ORTHO05D001644 6.3e-06 53.9 55 50.9
Thhalv10012265m.g Eutrema salsugineum HOM05D001738 ORTHO05D001644 6.3e-06 53.9 50 52.0
BcaC07g41803 Brassica carinata HOM05D001738 ORTHO05D001644 8.2e-06 53.5 51 51.0


User provided reference genes

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