Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB08g36348 Brassica carinata HOM05D005643 ORTHO05D006819 7.6e-141 503.8 256 100.0
BolC9t58193H Brassica oleracea HOM05D005643 ORTHO05D006819 3.0e-137 491.9 256 97.3
C09p53180 Brassica napus HOM05D005643 ORTHO05D006819 8.7e-137 490.3 256 96.9
A10p17720 Brassica napus HOM05D005643 ORTHO05D006819 3.7e-135 485.0 256 96.5
BraA10t43851Z Brassica rapa HOM05D005643 ORTHO05D006819 3.7e-135 485.0 256 96.5
Sp6g22110 Schrenkiella parvula HOM05D005643 ORTHO05D006819 1.9e-131 472.6 256 94.1
AL8G37130 Arabidopsis lyrata HOM05D005643 ORTHO05D006819 6.1e-130 467.6 256 91.8
AT5G60540 Arabidopsis thaliana HOM05D005643 ORTHO05D006819 2.3e-129 465.7 256 91.8
BolC2t07247H Brassica oleracea HOM05D005643 ORTHO05D006819 1.1e-128 463.4 255 92.5
Carub.0008s2123 Capsella rubella HOM05D005643 ORTHO05D006819 1.1e-128 463.4 256 91.4
CARHR274200 Cardamine hirsuta HOM05D005643 ORTHO05D006819 6.9e-126 454.1 256 90.2
BcaB08g36349 Brassica carinata HOM05D005643 ORTHO05D006819 3.8e-124 448.4 240 95.4
Aa31LG1G12530 Aethionema arabicum HOM05D005643 ORTHO05D006819 2.7e-122 442.2 256 88.3
Thhalv10014160m.g Eutrema salsugineum HOM05D005643 ORTHO05D006819 1.8e-121 439.5 251 89.6
THA.LOC104814830 Tarenaya hassleriana HOM05D005643 ORTHO05D006819 5.3e-118 427.9 256 84.0
Ciclev10029093m.g Citrus clementina HOM05D005643 ORTHO05D006819 9.7e-112 407.1 260 79.6
Atru.chr3.3643 Acer truncatum HOM05D005643 ORTHO05D006819 9.1e-110 400.6 257 79.4
Manes.04G022200 Manihot esculenta HOM05D005643 ORTHO05D006819 5.0e-108 394.8 256 78.5
Gohir.A05G074000 Gossypium hirsutum HOM05D005643 ORTHO05D006819 2.7e-106 389.0 255 76.5
Gohir.D05G076900 Gossypium hirsutum HOM05D005643 ORTHO05D006819 2.7e-106 389.0 255 76.1
Gorai.009G078300 Gossypium raimondii HOM05D005643 ORTHO05D006819 8.0e-106 387.5 255 75.7
TWI79G0673 Tripterygium wilfordii HOM05D005643 ORTHO05D006819 1.4e-105 386.7 257 77.0
TWI75G1433 Tripterygium wilfordii HOM05D005643 ORTHO05D006819 4.0e-105 385.2 257 75.9
Thecc.09G257100 Theobroma cacao HOM05D005643 ORTHO05D006819 1.2e-104 383.6 255 74.9
Potri.009G012700 Populus trichocarpa HOM05D005643 ORTHO05D006819 3.3e-104 382.1 256 74.6
TPR.G13337 Trifolium pratense HOM05D005643 ORTHO05D006819 1.7e-103 379.8 254 74.8
Dinv32759 Davidia involucrata HOM05D005643 ORTHO05D006819 2.8e-103 379.0 256 75.0
Prupe.6G100100 Prunus persica HOM05D005643 ORTHO05D006819 1.4e-102 376.7 254 76.0
Sabra09G0008500 Salix brachista HOM05D005643 ORTHO05D006819 3.1e-102 375.6 255 74.9
C02p11600 Brassica napus HOM05D005643 ORTHO05D006819 5.3e-102 374.8 205 92.2
Glyma.03G060100 Glycine max HOM05D005643 ORTHO05D006819 1.6e-101 373.2 254 74.4
Duzib170G0435 Durio zibethinus HOM05D005643 ORTHO05D006819 2.7e-101 372.5 252 75.4
Duzib170G0739 Durio zibethinus HOM05D005643 ORTHO05D006819 2.7e-101 372.5 252 75.4
TAR633G1751 Trochodendron aralioides HOM05D005643 ORTHO05D006819 3.5e-101 372.1 257 72.8
Cfa011331 Carpinus fangiana HOM05D005643 ORTHO05D006819 1.3e-100 370.2 255 74.1
Medtr4g015590 Medicago truncatula HOM05D005643 ORTHO05D006819 6.5e-100 367.9 254 73.2
QL01p022418 Quercus lobata HOM05D005643 ORTHO05D006819 8.5e-100 367.5 253 74.3
CiPaw.13G111900 Carya illinoinensis HOM05D005643 ORTHO05D006819 1.9e-99 366.3 255 74.9
Glyma.01G116100 Glycine max HOM05D005643 ORTHO05D006819 3.2e-99 365.5 259 71.8
Lalb_Chr19g0124481 Lupinus albus HOM05D005643 ORTHO05D006819 5.5e-99 364.8 255 72.2
Duzib150G0959 Durio zibethinus HOM05D005643 ORTHO05D006819 9.4e-99 364.0 255 72.2
arahy.Tifrunner.gnm1.ann1.X5NJ7E Arachis hypogaea HOM05D005643 ORTHO05D006819 4.7e-98 361.7 255 72.5
Psat7g245880 Pisum sativum HOM05D005643 ORTHO05D006819 4.7e-98 361.7 257 73.2
GSVIVG01025172001 Vitis vinifera HOM05D005643 ORTHO05D006819 4.7e-98 361.7 256 73.4
MELO3C025766.2 Cucumis melo HOM05D005643 ORTHO05D006819 8.0e-98 360.9 253 72.7
Aqoxy1G03172 Aquilegia oxysepala HOM05D005643 ORTHO05D006819 1.0e-97 360.5 254 72.0
FvH4_3g32570 Fragaria vesca HOM05D005643 ORTHO05D006819 1.0e-97 360.5 252 73.8
Phvul.010G001900 Phaseolus vulgaris HOM05D005643 ORTHO05D006819 1.0e-97 360.5 257 71.2
Eucgr.B02489 Eucalyptus grandis HOM05D005643 ORTHO05D006819 1.4e-97 360.1 257 72.4
Oeu059095.1 Olea europaea HOM05D005643 ORTHO05D006819 6.8e-97 357.8 258 69.0
Sed0015117 Sechium edule HOM05D005643 ORTHO05D006819 6.8e-97 357.8 252 71.4
FAN11G2689 Fragaria x ananassa HOM05D005643 ORTHO05D006819 2.0e-96 356.3 257 72.4
MD11G1133800 Malus domestica HOM05D005643 ORTHO05D006819 2.0e-96 356.3 272 69.1
Nn2g10757 Nelumbo nucifera HOM05D005643 ORTHO05D006819 2.0e-96 356.3 256 70.3
PGR102G1730 Punica granatum HOM05D005643 ORTHO05D006819 1.7e-95 353.2 256 71.9
Rhsim13G0093700 Rhododendron simsii HOM05D005643 ORTHO05D006819 1.7e-95 353.2 256 70.7
Cc01_g11250 Coffea canephora HOM05D005643 ORTHO05D006819 2.2e-95 352.8 256 71.1
arahy.Tifrunner.gnm1.ann1.9U2L6D Arachis hypogaea HOM05D005643 ORTHO05D006819 2.8e-95 352.4 226 76.1
Lj3g0018588 Lotus japonicus HOM05D005643 ORTHO05D006819 1.1e-94 350.5 253 69.2
CAN.G1001.26 Capsicum annuum HOM05D005643 ORTHO05D006819 1.4e-94 350.1 256 68.8
Nitab4.5_0006757g0010 Nicotiana tabacum HOM05D005643 ORTHO05D006819 1.4e-94 350.1 258 69.4
Sc06g0010070 Simmondsia chinensis HOM05D005643 ORTHO05D006819 4.1e-94 348.6 254 69.3
Migut.D02210 Erythranthe guttata HOM05D005643 ORTHO05D006819 7.0e-94 347.8 253 69.2
Migut.D02214 Erythranthe guttata HOM05D005643 ORTHO05D006819 7.0e-94 347.8 253 69.2
MSTRG.21131 Avicennia marina HOM05D005643 ORTHO05D006819 9.1e-94 347.4 255 68.6
FAN21G1883 Fragaria x ananassa HOM05D005643 ORTHO05D006819 9.1e-94 347.4 270 68.9
PGSC0003DMG400008060 Solanum tuberosum HOM05D005643 ORTHO05D006819 9.1e-94 347.4 256 68.8
FAN16G3648 Fragaria x ananassa HOM05D005643 ORTHO05D006819 1.2e-93 347.1 257 71.2
PSO384G4957 Papaver somniferum HOM05D005643 ORTHO05D006819 1.2e-93 347.1 259 70.7
CAN.G631.16 Capsicum annuum HOM05D005643 ORTHO05D006819 2.7e-93 345.9 258 70.2
Solyc11g069290.2 Solanum lycopersicum HOM05D005643 ORTHO05D006819 2.7e-93 345.9 256 68.4
Sopen11g028020 Solanum pennellii HOM05D005643 ORTHO05D006819 2.7e-93 345.9 256 68.4
CsaV3_6G013840 Cucumis sativus L. HOM05D005643 ORTHO05D006819 3.5e-93 345.5 252 69.8
HanXRQChr01g0018371 Helianthus annuus HOM05D005643 ORTHO05D006819 5.9e-93 344.7 258 69.8
RcHm_v2.0_Chr5g0059641 Rosa chinensis HOM05D005643 ORTHO05D006819 5.9e-93 344.7 266 68.8
ECA248G1947 Erigeron canadensis HOM05D005643 ORTHO05D006819 1.0e-92 344.0 257 69.6
PSO339G3071 Papaver somniferum HOM05D005643 ORTHO05D006819 1.0e-92 344.0 256 69.1
SalBow5G2340 Salvia bowleyana HOM05D005643 ORTHO05D006819 1.3e-92 343.6 255 68.2
DCAR_006056 Daucus carota HOM05D005643 ORTHO05D006819 2.9e-92 342.4 256 69.9
Lj1A190T89 Lonicera japonica HOM05D005643 ORTHO05D006819 2.9e-92 342.4 258 69.0
Peaxi162Scf00270g00108 Petunia axillaris HOM05D005643 ORTHO05D006819 1.9e-91 339.7 258 69.0
SGA_v2.0_scaffold97G29210 Striga asiatica HOM05D005643 ORTHO05D006819 2.5e-91 339.3 230 72.6
ATR0115G033 Amborella trichopoda HOM05D005643 ORTHO05D006819 1.6e-90 336.7 257 66.9
unitig_0.g1517 Utricularia gibba HOM05D005643 ORTHO05D006819 6.1e-90 334.7 254 66.9
arahy.Tifrunner.gnm1.ann1.QSC7KM Arachis hypogaea HOM05D005643 ORTHO05D006819 1.4e-89 333.6 305 61.0
BcaC04g19711 Brassica carinata HOM05D005643 ORTHO05D006819 1.4e-89 333.6 257 72.8
VMungo0331G1810 Vigna mungo HOM05D005643 ORTHO05D006819 1.4e-89 333.6 241 69.3
Lalb_Chr03g0043331 Lupinus albus HOM05D005643 ORTHO05D006819 1.8e-89 333.2 241 67.6
Nitab4.5_0000650g0110 Nicotiana tabacum HOM05D005643 ORTHO05D006819 2.3e-89 332.8 281 63.3
Os02g0130100 Oryza sativa ssp. japonica HOM05D005643 ORTHO05D006819 2.3e-89 332.8 254 65.7
EL10Ac9g22501 Beta vulgaris HOM05D005643 ORTHO05D006819 2.6e-88 329.3 226 72.1
MBI07_g41453_MAGBIO Magnolia biondii HOM05D005643 ORTHO05D006819 3.7e-87 325.5 241 68.9
AUR62024993 Chenopodium quinoa HOM05D005643 ORTHO05D006819 4.9e-87 325.1 260 63.5
MD03G1113000 Malus domestica HOM05D005643 ORTHO05D006819 8.3e-87 324.3 223 73.5
Lsat_1_v5_gn_1_65480 Lactuca sativa HOM05D005643 ORTHO05D006819 3.1e-86 322.4 256 66.4
AUR62039626 Chenopodium quinoa HOM05D005643 ORTHO05D006819 5.4e-86 321.6 260 63.1
HPP92_025849 Vanilla planifolia HOM05D005643 ORTHO05D006819 4.5e-85 318.5 256 60.5
Hma1.2p1_1030F.1_g249820 Hydrangea macrophylla HOM05D005643 ORTHO05D006819 3.3e-83 312.4 241 66.8
SEGI_15740 Sequoiadendron giganteum HOM05D005643 ORTHO05D006819 2.3e-81 306.2 257 61.5
AagrBONN_evm.TU.Sc2ySwM_117.2790 Anthoceros agrestis HOM05D005643 ORTHO05D006819 1.2e-80 303.9 230 65.2
Pp3c19_5510 Physcomitrium patens HOM05D005643 ORTHO05D006819 1.7e-79 300.1 256 62.1
Pp3c18_20140 Physcomitrium patens HOM05D005643 ORTHO05D006819 1.1e-78 297.4 255 59.2
SMO364G0700 Selaginella moellendorffii HOM05D005643 ORTHO05D006819 5.0e-76 288.5 230 62.6
Actinidia24093 Actinidia chinensis HOM05D005643 ORTHO05D006819 2.5e-75 286.2 201 70.1
Mapoly0081s0077 Marchantia polymorpha HOM05D005643 ORTHO05D006819 5.6e-75 285.0 237 62.4
Actinidia03737 Actinidia chinensis HOM05D005643 ORTHO05D006819 9.5e-75 284.3 207 71.0
Nn2g13073 Nelumbo nucifera HOM05D001952 ORTHO05D005047 9.5e-75 284.3 237 63.3
Zm00001eb208970 Zea mays HOM05D005643 ORTHO05D006819 5.8e-72 275.0 164 79.3
CSS0039600 Camellia sinensis var. sinensis HOM05D005643 ORTHO05D006819 2.4e-70 269.6 260 58.8
arahy.Tifrunner.gnm1.ann1.J7FTHV Arachis hypogaea HOM05D005643 ORTHO05D006819 4.6e-69 265.4 210 64.8
MD03G1113200 Malus domestica HOM05D005643 ORTHO05D006819 7.3e-67 258.1 176 73.3
BcaC03g13961 Brassica carinata HOM05D005643 ORTHO05D006819 6.2e-66 255.0 167 78.4
Ca_09130_v3 Cicer arietinum L. HOM05D005643 ORTHO05D006819 3.1e-65 252.7 189 67.2
Oeu002854.1 Olea europaea HOM05D005643 ORTHO05D006819 4.0e-65 252.3 198 64.6
CBR_g31179 Chara braunii HOM05D005643 ORTHO05D006819 1.5e-64 250.4 243 53.9
vmacro03191 Vaccinium macrocarpon HOM05D005643 ORTHO05D006819 5.1e-60 235.3 253 51.8
MBI07_g42630_MAGBIO Magnolia biondii HOM05D005643 ORTHO05D006819 3.3e-59 232.6 222 57.7
Cre03.g167051 Chlamydomonas reinhardtii HOM05D005643 ORTHO05D006819 8.1e-58 228.0 253 49.8
MCO05G014 Micromonas commoda HOM05D005643 ORTHO05D006819 1.4e-57 227.3 246 52.0
Lj2A1030T57 Lonicera japonica HOM05D005643 ORTHO05D006819 1.8e-49 200.3 115 82.6
TAR636G3455 Trochodendron aralioides HOM05D005643 ORTHO05D006819 8.7e-44 181.4 101 80.2
Haze_23864 Corylus avellana HOM05D005643 ORTHO05D006819 9.6e-43 177.9 144 66.7
Cfa022863 Carpinus fangiana HOM05D005643 ORTHO05D006819 8.1e-42 174.9 262 40.5
CiPaw.13G111500 Carya illinoinensis HOM05D005643 ORTHO05D006819 9.9e-40 167.9 144 66.0
Oeu002855.1 Olea europaea HOM05D005643 ORTHO05D006819 2.9e-39 166.4 153 57.5
BraA02t05718Z Brassica rapa HOM05D005643 ORTHO05D006819 4.0e-33 146.0 68 100.0
Rhsim06G0101300 Rhododendron simsii HOM05D005643 ORTHO05D006819 9.6e-27 124.8 93 64.5
SHI06096 Sapria himalayana HOM05D005643 ORTHO05D006819 6.2e-26 122.1 117 53.0
Cpa.g.sc216.17 Carica papaya HOM05D005643 ORTHO05D006819 2.9e-23 113.2 57 87.7
SHI06095 Sapria himalayana HOM05D005643 ORTHO05D006819 1.9e-19 100.5 72 63.9
ClCG02G021090 Citrullus lanatus HOM05D005643 ORTHO05D006819 2.0e-16 90.5 72 69.4
Cpa.g.sc216.18 Carica papaya HOM05D005643 ORTHO05D006819 1.3e-15 87.8 78 59.0
Dinv12496 Davidia involucrata HOM05D005643 ORTHO05D006819 2.2e-15 87.0 79 62.0
TAR636G0837 Trochodendron aralioides HOM05D005643 ORTHO05D006819 1.8e-12 77.4 73 57.5
SHI06094 Sapria himalayana HOM05D000105 ORTHO05D000023 2.0e-11 73.9 60 68.3
Lj2A1030T58 Lonicera japonica HOM05D005643 ORTHO05D006819 3.3e-11 73.2 73 57.5
Rhsim13G0093600 Rhododendron simsii HOM05D000699 ORTHO05D000519 5.3e-09 65.9 53 62.3
MBI07_g43742_MAGBIO Magnolia biondii HOM05D005643 ORTHO05D006819 2.5e-06 57.0 116 39.7


User provided reference genes

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