Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB08g36102 Brassica carinata HOM05D004586 ORTHO05D005266 9.2e-172 607.1 369 100.0
BcaB02g06919 Brassica carinata HOM05D004586 ORTHO05D005266 2.0e-126 456.4 365 82.2
BcaC05g24523 Brassica carinata HOM05D004586 ORTHO05D005266 5.5e-116 421.8 351 82.3
BolC5t28977H Brassica oleracea HOM05D004586 ORTHO05D005266 5.5e-116 421.8 351 82.3
A10p02080 Brassica napus HOM05D000330 ORTHO05D005266 1.8e-114 416.8 347 81.0
BraA10t42477Z Brassica rapa HOM05D000330 ORTHO05D000209 3.0e-114 416.0 344 78.2
C05p01990 Brassica napus HOM05D004586 ORTHO05D005266 2.2e-112 409.8 352 81.0
Thhalv10006867m.g Eutrema salsugineum HOM05D004586 ORTHO05D005266 3.3e-84 316.2 406 62.8
CARHR002890 Cardamine hirsuta HOM05D004586 ORTHO05D005266 6.1e-83 312.0 409 59.7
Carub.0001s0267 Capsella rubella HOM05D004586 ORTHO05D005266 1.0e-77 294.7 414 58.5
AL1G13040 Arabidopsis lyrata HOM05D004586 ORTHO05D005266 1.8e-74 283.9 401 59.1
AT1G03530 Arabidopsis thaliana HOM05D004586 ORTHO05D005266 4.0e-74 282.7 406 58.4
BcaB01g00913 Brassica carinata HOM05D004586 ORTHO05D005266 1.3e-64 251.1 197 97.0
BraA08t35631Z Brassica rapa HOM05D004586 ORTHO05D005266 2.9e-64 250.0 365 53.7
Aa31LG1G20890 Aethionema arabicum HOM05D004586 ORTHO05D005266 1.2e-62 244.6 419 51.1
THA.LOC104826023 Tarenaya hassleriana HOM05D004586 ORTHO05D005266 2.1e-59 233.8 393 51.1
C08p00660 Brassica napus HOM05D004586 ORTHO05D005266 1.8e-58 230.7 355 45.6
Thhalv10024822m.g Eutrema salsugineum HOM05D004586 ORTHO05D005266 3.5e-46 189.9 248 57.7
Sp1g02460 Schrenkiella parvula HOM05D004586 ORTHO05D005266 4.6e-46 189.5 132 85.6
A08p37340 Brassica napus HOM05D004586 ORTHO05D005266 1.6e-43 181.0 135 69.6
BolC8t46864H Brassica oleracea HOM05D004586 ORTHO05D005266 8.4e-40 168.7 292 51.7
BcaB08g36101 Brassica carinata HOM05D004586 ORTHO05D005266 1.4e-39 167.9 104 87.5
ECA234G1777 Erigeron canadensis HOM05D004586 ORTHO05D005266 1.2e-30 138.3 120 58.3
Nitab4.5_0007732g0010 Nicotiana tabacum HOM05D004586 ORTHO05D005266 1.2e-30 138.3 125 57.6
CSS0039758 Camellia sinensis var. sinensis HOM05D004586 ORTHO05D005266 6.0e-30 136.0 95 70.5
HanXRQChr14g0441421 Helianthus annuus HOM05D004586 ORTHO05D005266 6.0e-30 136.0 120 57.5
HanXRQChr05g0140481 Helianthus annuus HOM05D004586 ORTHO05D005266 1.8e-29 134.4 120 58.3
Actinidia09891 Actinidia chinensis HOM05D004586 ORTHO05D005266 3.9e-29 133.3 120 59.2
Oeu025511.1 Olea europaea HOM05D004586 ORTHO05D005266 3.9e-29 133.3 136 54.4
SGA_v2.0_scaffold159G37633 Striga asiatica HOM05D004586 ORTHO05D005266 5.1e-29 132.9 119 58.0
Cfa014556 Carpinus fangiana HOM05D004586 ORTHO05D005266 6.7e-29 132.5 92 72.8
Migut.H01030 Erythranthe guttata HOM05D004586 ORTHO05D005266 6.7e-29 132.5 97 66.0
SGA_v2.0_scaffold49G18309 Striga asiatica HOM05D004586 ORTHO05D005266 6.7e-29 132.5 96 64.6
Cpa.g.sc34.112 Carica papaya HOM05D004586 ORTHO05D005266 8.7e-29 132.1 156 49.4
SalBow1G4799 Salvia bowleyana HOM05D004586 ORTHO05D005266 8.7e-29 132.1 96 65.6
SalBow7G1236 Salvia bowleyana HOM05D004586 ORTHO05D005266 8.7e-29 132.1 96 65.6
Haze_13103 Corylus avellana HOM05D004586 ORTHO05D005266 1.1e-28 131.7 95 70.5
Eucgr.B03848 Eucalyptus grandis HOM05D004586 ORTHO05D005266 1.1e-28 131.7 100 65.0
Actinidia12449 Actinidia chinensis HOM05D004586 ORTHO05D005266 1.5e-28 131.3 123 56.9
FvH4_6g44910 Fragaria vesca HOM05D004586 ORTHO05D005266 1.5e-28 131.3 125 59.2
Lj1C734T7 Lonicera japonica HOM05D004586 ORTHO05D005266 1.9e-28 131.0 93 69.9
RcHm_v2.0_Chr2g0162091 Rosa chinensis HOM05D004586 ORTHO05D005266 1.9e-28 131.0 125 59.2
Nitab4.5_0009520g0030 Nicotiana tabacum HOM05D004586 ORTHO05D005266 4.3e-28 129.8 119 57.1
Atru.chr6.3049 Acer truncatum HOM05D004586 ORTHO05D005266 5.6e-28 129.4 370 40.5
FAN09G2343 Fragaria x ananassa HOM05D004586 ORTHO05D005266 5.6e-28 129.4 128 58.6
FAN14G4866 Fragaria x ananassa HOM05D004586 ORTHO05D005266 5.6e-28 129.4 125 58.4
MD09G1092000 Malus domestica HOM05D004586 ORTHO05D005266 5.6e-28 129.4 144 50.0
FAN02G1766 Fragaria x ananassa HOM05D004586 ORTHO05D005266 9.6e-28 128.6 128 58.6
PGR042G3101 Punica granatum HOM05D004586 ORTHO05D005266 9.6e-28 128.6 135 53.3
TAR627G0949 Trochodendron aralioides HOM05D004586 ORTHO05D005266 9.6e-28 128.6 126 54.8
FAN05G3704 Fragaria x ananassa HOM05D004586 ORTHO05D005266 1.6e-27 127.9 142 54.2
Nitab4.5_0003018g0070 Nicotiana tabacum HOM05D004586 ORTHO05D005266 2.8e-27 127.1 119 56.3
TWI36G0730 Tripterygium wilfordii HOM05D004586 ORTHO05D005266 2.8e-27 127.1 143 51.7
PSO541G0834 Papaver somniferum HOM05D004586 ORTHO05D005266 3.7e-27 126.7 96 65.6
Lsat_1_v5_gn_4_68860 Lactuca sativa HOM05D004586 ORTHO05D005266 4.8e-27 126.3 86 73.3
MD17G1081900 Malus domestica HOM05D004586 ORTHO05D005266 4.8e-27 126.3 144 53.5
TPR.G21660 Trifolium pratense HOM05D004586 ORTHO05D005266 1.4e-26 124.8 98 64.3
CsaV3_2G036510 Cucumis sativus L. HOM05D004586 ORTHO05D005266 2.4e-26 124.0 133 52.6
Lj3g0023901 Lotus japonicus HOM05D004586 ORTHO05D005266 2.4e-26 124.0 132 53.0
ClCG02G017410 Citrullus lanatus HOM05D004586 ORTHO05D005266 3.1e-26 123.6 149 49.0
Peaxi162Scf00007g02845 Petunia axillaris HOM05D004586 ORTHO05D005266 3.1e-26 123.6 119 53.8
PGSC0003DMG400018364 Solanum tuberosum HOM05D004586 ORTHO05D005266 3.1e-26 123.6 96 63.5
Sed0007770 Sechium edule HOM05D004586 ORTHO05D005266 4.0e-26 123.2 139 50.4
Thecc.02G173500 Theobroma cacao HOM05D004586 ORTHO05D005266 4.0e-26 123.2 364 39.0
CANSAT64G2104 Cannabis sativa HOM05D004586 ORTHO05D005266 6.9e-26 122.5 96 64.6
Lalb_Chr01g0005391 Lupinus albus HOM05D004586 ORTHO05D005266 6.9e-26 122.5 104 57.7
Glyma.12G108100 Glycine max HOM05D004586 ORTHO05D005266 9.0e-26 122.1 74 77.0
PSO675G0516 Papaver somniferum HOM05D004586 ORTHO05D005266 9.0e-26 122.1 96 62.5
Solyc07g054460.4 Solanum lycopersicum HOM05D004586 ORTHO05D005266 9.0e-26 122.1 96 63.5
Sopen07g028400 Solanum pennellii HOM05D004586 ORTHO05D005266 9.0e-26 122.1 96 63.5
Cc00_g21120 Coffea canephora HOM05D004586 ORTHO05D005266 2.0e-25 120.9 124 57.3
MELO3C003861.2 Cucumis melo HOM05D004586 ORTHO05D005266 2.0e-25 120.9 133 52.6
Sabra13G0117000 Salix brachista HOM05D004586 ORTHO05D005266 2.0e-25 120.9 94 67.0
MSTRG.14187 Avicennia marina HOM05D004586 ORTHO05D005266 3.4e-25 120.2 122 51.6
Medtr0072s0050 Medicago truncatula HOM05D004586 ORTHO05D005266 3.4e-25 120.2 98 62.2
Sc12g0002770 Simmondsia chinensis HOM05D004586 ORTHO05D005266 3.4e-25 120.2 148 48.6
Manes.12G079600 Manihot esculenta HOM05D004586 ORTHO05D005266 4.5e-25 119.8 133 50.4
QL10p048480 Quercus lobata HOM05D004586 ORTHO05D005266 4.5e-25 119.8 86 65.1
TWI18G0514 Tripterygium wilfordii HOM05D004586 ORTHO05D005266 4.5e-25 119.8 97 62.9
CiPaw.03G171000 Carya illinoinensis HOM05D004586 ORTHO05D005266 5.8e-25 119.4 80 73.8
Psat0s4261g0040 Pisum sativum HOM05D004586 ORTHO05D005266 5.8e-25 119.4 96 62.5
Hma1.2p1_0875F.1_g231553 Hydrangea macrophylla HOM05D004586 ORTHO05D005266 7.6e-25 119.0 95 64.2
Hma1.2p1_0875F.1_g231580 Hydrangea macrophylla HOM05D004586 ORTHO05D005266 7.6e-25 119.0 95 64.2
GSVIVG01030569001 Vitis vinifera HOM05D004586 ORTHO05D005266 7.6e-25 119.0 94 66.0
Prupe.3G233000 Prunus persica HOM05D004586 ORTHO05D005266 1.3e-24 118.2 76 72.4
PSO384G2677 Papaver somniferum HOM05D004586 ORTHO05D005266 1.7e-24 117.9 87 65.5
EL10As5g23555 Beta vulgaris HOM05D004586 ORTHO05D005266 2.9e-24 117.1 86 68.6
Glyma.06G297000 Glycine max HOM05D004586 ORTHO05D005266 2.9e-24 117.1 97 61.9
MBI02_g10548_MAGBIO Magnolia biondii HOM05D004586 ORTHO05D005266 2.9e-24 117.1 119 53.8
ATR0693G407 Amborella trichopoda HOM05D004586 ORTHO05D005266 4.9e-24 116.3 96 62.5
Ciclev10014470m.g Citrus clementina HOM05D004586 ORTHO05D005266 4.9e-24 116.3 362 40.6
COL.COLO4_13701 Corchorus olitorius HOM05D004586 ORTHO05D005266 4.9e-24 116.3 83 68.7
CAN.G78.83 Capsicum annuum HOM05D004586 ORTHO05D005266 8.4e-24 115.5 87 64.4
Ca_27565_v3 Cicer arietinum L. HOM05D004586 ORTHO05D005266 8.4e-24 115.5 122 54.1
Duzib052G0504 Durio zibethinus HOM05D004586 ORTHO05D005266 8.4e-24 115.5 373 38.3
Potri.013G145300 Populus trichocarpa HOM05D004586 ORTHO05D005266 8.4e-24 115.5 93 64.5
VMungo1127G2109 Vigna mungo HOM05D004586 ORTHO05D005266 1.4e-23 114.8 74 71.6
arahy.Tifrunner.gnm1.ann1.FC6AAX Arachis hypogaea HOM05D004586 ORTHO05D005266 2.5e-23 114.0 99 55.6
Ca_20687_v3 Cicer arietinum L. HOM05D004586 ORTHO05D005266 3.2e-23 113.6 74 70.3
MELO3C021880.2 Cucumis melo HOM05D004586 ORTHO05D005266 3.2e-23 113.6 74 74.3
Gohir.D13G149100 Gossypium hirsutum HOM05D004586 ORTHO05D005266 3.2e-23 113.6 87 65.5
Gorai.013G166800 Gossypium raimondii HOM05D004586 ORTHO05D005266 5.5e-23 112.8 87 65.5
Potri.019G104400 Populus trichocarpa HOM05D004586 ORTHO05D005266 7.1e-23 112.5 84 70.2
AUR62035735 Chenopodium quinoa HOM05D004586 ORTHO05D005266 9.3e-23 112.1 93 66.7
TAR629G0893 Trochodendron aralioides HOM05D004586 ORTHO05D005266 9.3e-23 112.1 126 49.2
COL.COLO4_08510 Corchorus olitorius HOM05D004586 ORTHO05D005266 1.2e-22 111.7 74 73.0
unitig_26.g9937 Utricularia gibba HOM05D004586 ORTHO05D005266 1.2e-22 111.7 100 57.0
Phvul.011G112400 Phaseolus vulgaris HOM05D004586 ORTHO05D005266 1.6e-22 111.3 74 68.9
vmacro12267 Vaccinium macrocarpon HOM05D004586 ORTHO05D005266 1.6e-22 111.3 123 52.0
Duzib106G1111 Durio zibethinus HOM05D004586 ORTHO05D005266 2.7e-22 110.5 131 48.1
Nn1g03938 Nelumbo nucifera HOM05D004586 ORTHO05D005266 4.6e-22 109.8 93 60.2
Gohir.A13G144300 Gossypium hirsutum HOM05D004586 ORTHO05D005266 7.9e-22 109.0 84 65.5
HPP92_014062 Vanilla planifolia HOM05D004586 ORTHO05D005266 7.9e-22 109.0 133 46.6
Os05g0502800 Oryza sativa ssp. japonica HOM05D004586 ORTHO05D005266 1.0e-21 108.6 76 65.8
SHI10466 Sapria himalayana HOM05D004586 ORTHO05D005266 1.8e-21 107.8 108 56.5
arahy.Tifrunner.gnm1.ann1.SANC69 Arachis hypogaea HOM05D004586 ORTHO05D005266 3.3e-20 103.6 116 48.3
Rhsim06G0149700 Rhododendron simsii HOM05D004586 ORTHO05D005266 5.7e-20 102.8 74 63.5
Zm00001eb292050 Zea mays HOM05D004586 ORTHO05D005266 1.6e-19 101.3 96 53.1
Lj3g0000702 Lotus japonicus HOM05D004586 ORTHO05D005266 2.8e-19 100.5 76 65.8
Ah.01g003940 Amaranthus hybridus HOM05D004586 ORTHO05D005266 8.2e-19 99.0 102 51.0
Dinv15471 Davidia involucrata HOM05D004586 ORTHO05D005266 8.2e-19 99.0 64 73.4
CDE02G0135 Ceratophyllum demersum HOM05D004586 ORTHO05D005266 1.1e-18 98.6 65 69.2
Peaxi162Scf00485g00032 Petunia axillaris HOM05D004586 ORTHO05D005266 1.1e-18 98.6 166 37.3
arahy.Tifrunner.gnm1.ann1.IS01QF Arachis hypogaea HOM05D004586 ORTHO05D005266 1.8e-18 97.8 73 65.8
SEGI_15076 Sequoiadendron giganteum HOM05D004586 ORTHO05D005266 1.8e-18 97.8 76 56.6
CDE02G4059 Ceratophyllum demersum HOM05D004586 ORTHO05D005266 3.1e-18 97.1 87 56.3
SMO137G0274 Selaginella moellendorffii HOM05D004586 ORTHO05D005266 4.1e-18 96.7 74 58.1
TPR.G27075 Trifolium pratense HOM05D004586 ORTHO05D005266 6.9e-18 95.9 100 55.0
arahy.Tifrunner.gnm1.ann1.7D4Z5S Arachis hypogaea HOM05D004586 ORTHO05D005266 9.0e-18 95.5 73 64.4
AUR62000198 Chenopodium quinoa HOM05D004586 ORTHO05D005266 1.2e-17 95.1 68 69.1
Medtr2g090095 Medicago truncatula HOM05D004586 ORTHO05D005266 1.2e-17 95.1 96 52.1
Pp3c14_14050 Physcomitrium patens HOM05D004586 ORTHO05D005266 1.7e-16 91.3 96 47.9
Psat5g270160 Pisum sativum HOM05D004586 ORTHO05D005266 1.7e-16 91.3 84 53.6
PSO339G0898 Papaver somniferum HOM05D004586 ORTHO05D005266 8.4e-16 89.0 98 48.0
Hund09647 Selenicereus undatus HOM05D004586 ORTHO05D005266 1.1e-15 88.6 66 63.6
Pp3c10_10230 Physcomitrium patens HOM05D004586 ORTHO05D005266 5.5e-15 86.3 95 45.3
Mapoly0108s0039 Marchantia polymorpha HOM05D004586 ORTHO05D005266 7.9e-14 82.4 95 44.2
Lalb_Chr22g0356411 Lupinus albus HOM05D004586 ORTHO05D005266 1.8e-13 81.3 66 59.1
CBR_g12767 Chara braunii HOM05D004586 ORTHO05D005266 3.0e-13 80.5 88 48.9
CAN.G996.7 Capsicum annuum HOM05D004586 ORTHO05D005266 3.3e-12 77.0 94 43.6
AagrBONN_evm.TU.Sc2ySwM_117.2920 Anthoceros agrestis HOM05D004586 ORTHO05D005266 3.1e-10 70.5 98 40.8
DCAR_019194 Daucus carota HOM05D004586 ORTHO05D005266 1.7e-08 64.7 42 69.0
MBI02_g27225_MAGBIO Magnolia biondii HOM05D004586 ORTHO05D005266 1.2e-06 58.5 82 42.7


User provided reference genes

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