Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB08g36006 Brassica carinata HOM05D003894 ORTHO05D004584 2.3e-122 442.2 216 100.0
BcaC06g34254 Brassica carinata HOM05D003894 ORTHO05D004584 3.3e-28 129.4 64 92.2
BcaC06g31388 Brassica carinata HOM05D003894 ORTHO05D004584 5.6e-28 128.6 64 92.2
C07p31050 Brassica napus HOM05D003894 ORTHO05D004584 7.4e-28 128.3 64 92.2
BolC7t43649H Brassica oleracea HOM05D003894 ORTHO05D004584 7.4e-28 128.3 64 92.2
A06p45100 Brassica napus HOM05D003894 ORTHO05D004584 2.1e-27 126.7 64 89.1
BraA06t27379Z Brassica rapa HOM05D003894 ORTHO05D004584 2.1e-27 126.7 64 89.1
AL8G10600 Arabidopsis lyrata HOM05D003894 ORTHO05D004584 1.1e-26 124.4 64 87.5
AT5G47435 Arabidopsis thaliana HOM05D003894 ORTHO05D004584 1.1e-26 124.4 64 87.5
Sp2g12140 Schrenkiella parvula HOM05D003894 ORTHO05D004584 1.8e-26 123.6 64 87.5
CARHR173940 Cardamine hirsuta HOM05D003894 ORTHO05D004584 3.1e-26 122.9 64 87.5
Carub.0008s0035 Capsella rubella HOM05D003894 ORTHO05D004584 5.3e-26 122.1 64 85.9
Aa31sc265G50 Aethionema arabicum HOM05D003894 ORTHO05D004584 2.0e-25 120.2 64 85.9
Thhalv10025694m.g Eutrema salsugineum HOM05D003894 ORTHO05D004584 2.6e-25 119.8 64 81.2
Sp7g16820 Schrenkiella parvula HOM05D003894 ORTHO05D004584 7.6e-25 118.2 64 79.7
Thhalv10000960m.g Eutrema salsugineum HOM05D003894 ORTHO05D004584 9.9e-25 117.9 64 82.8
BcaC09g50466 Brassica carinata HOM05D003894 ORTHO05D004584 2.2e-24 116.7 64 78.1
A01p20010 Brassica napus HOM05D003894 ORTHO05D004584 2.2e-24 116.7 64 78.1
C01p25110 Brassica napus HOM05D003894 ORTHO05D004584 2.2e-24 116.7 64 78.1
BraA01t01924Z Brassica rapa HOM05D003894 ORTHO05D004584 2.2e-24 116.7 64 78.1
AL7G37350 Arabidopsis lyrata HOM05D003894 ORTHO05D004584 3.8e-24 115.9 64 78.1
AT4G17360 Arabidopsis thaliana HOM05D003894 ORTHO05D004584 3.8e-24 115.9 64 78.1
BcaNung00098 Brassica carinata HOM05D003894 ORTHO05D004584 4.9e-24 115.5 64 78.1
CARHR223970 Cardamine hirsuta HOM05D003894 ORTHO05D004584 2.4e-23 113.2 64 76.6
BolC1t02463H Brassica oleracea HOM05D003894 ORTHO05D004584 3.2e-23 112.8 64 76.6
Carub.0007s2405 Capsella rubella HOM05D003894 ORTHO05D004584 3.2e-23 112.8 64 75.0
Aa31LG6G100 Aethionema arabicum HOM05D003894 ORTHO05D004584 7.9e-22 108.2 64 71.9
Cpa.g.sc29.176 Carica papaya HOM05D003894 ORTHO05D004584 1.1e-20 104.4 64 71.9
AUR62007102 Chenopodium quinoa HOM05D003894 ORTHO05D004584 4.3e-20 102.4 64 67.2
AUR62019965 Chenopodium quinoa HOM05D003894 ORTHO05D004584 9.6e-20 101.3 73 61.6
SGA_v2.0_scaffold199G41177 Striga asiatica HOM05D003894 ORTHO05D004584 1.6e-19 100.5 64 64.1
Atru.chr9.1291 Acer truncatum HOM05D003894 ORTHO05D004584 2.1e-19 100.1 64 65.6
Medtr7g016670 Medicago truncatula HOM05D003894 ORTHO05D004584 2.8e-19 99.8 64 65.6
HanXRQChr08g0227781 Helianthus annuus HOM05D003894 ORTHO05D004584 3.7e-19 99.4 64 64.1
Peaxi162Scf01022g00325 Petunia axillaris HOM05D003894 ORTHO05D004584 3.7e-19 99.4 64 64.1
CAN.G1058.48 Capsicum annuum HOM05D003894 ORTHO05D004584 4.8e-19 99.0 64 62.5
Lalb_Chr16g0386751 Lupinus albus HOM05D003894 ORTHO05D004584 4.8e-19 99.0 64 65.6
TWI60G0612 Tripterygium wilfordii HOM05D003894 ORTHO05D004584 4.8e-19 99.0 64 62.5
arahy.Tifrunner.gnm1.ann1.0BBG36 Arachis hypogaea HOM05D003894 ORTHO05D004584 6.2e-19 98.6 64 64.1
arahy.Tifrunner.gnm1.ann1.HK0HI4 Arachis hypogaea HOM05D003894 ORTHO05D004584 6.2e-19 98.6 64 64.1
Ca_06903_v3 Cicer arietinum L. HOM05D003894 ORTHO05D004584 6.2e-19 98.6 64 64.1
Phvul.003G221600 Phaseolus vulgaris HOM05D003894 ORTHO05D004584 6.2e-19 98.6 64 64.1
Solyc06g060770.3 Solanum lycopersicum HOM05D003894 ORTHO05D004584 6.2e-19 98.6 112 42.0
arahy.Tifrunner.gnm1.ann1.31006K Arachis hypogaea HOM05D003894 ORTHO05D004584 8.1e-19 98.2 64 64.1
Glyma.17G142800 Glycine max HOM05D003894 ORTHO05D004584 8.1e-19 98.2 64 64.1
QL12p011698 Quercus lobata HOM05D003894 ORTHO05D004584 8.1e-19 98.2 64 64.1
TWI81G0562 Tripterygium wilfordii HOM05D003894 ORTHO05D004584 8.1e-19 98.2 64 64.1
arahy.Tifrunner.gnm1.ann1.HNG0SX Arachis hypogaea HOM05D003894 ORTHO05D004584 1.1e-18 97.8 64 64.1
Lsat_1_v5_gn_3_1181 Lactuca sativa HOM05D003894 ORTHO05D004584 1.1e-18 97.8 64 62.5
Lj4g0028027 Lotus japonicus HOM05D003894 ORTHO05D004584 1.1e-18 97.8 64 65.6
Nitab4.5_0001076g0020 Nicotiana tabacum HOM05D003894 ORTHO05D004584 1.1e-18 97.8 64 64.1
Glyma.05G060500 Glycine max HOM05D003894 ORTHO05D004584 1.4e-18 97.4 64 64.1
SalBow6G6274 Salvia bowleyana HOM05D003894 ORTHO05D004584 1.4e-18 97.4 84 51.2
Hund14570 Selenicereus undatus HOM05D003894 ORTHO05D004584 1.4e-18 97.4 64 60.9
TPR.G23384 Trifolium pratense HOM05D003894 ORTHO05D004584 1.4e-18 97.4 64 64.1
Nn6g33915 Nelumbo nucifera HOM05D003894 ORTHO05D004584 1.8e-18 97.1 64 59.4
Psat3g203360 Pisum sativum HOM05D003894 ORTHO05D004584 1.8e-18 97.1 64 62.5
Nitab4.5_0000618g0110 Nicotiana tabacum HOM05D003894 ORTHO05D004584 2.4e-18 96.7 64 62.5
Nitab4.5_0001381g0150 Nicotiana tabacum HOM05D003894 ORTHO05D004584 2.4e-18 96.7 64 60.9
PGR031G3663 Punica granatum HOM05D003894 ORTHO05D004584 2.4e-18 96.7 64 62.5
Sopen06g020890 Solanum pennellii HOM05D003894 ORTHO05D004584 2.4e-18 96.7 112 41.1
VMungo0251G1668 Vigna mungo HOM05D003894 ORTHO05D004584 2.4e-18 96.7 64 62.5
Dinv39159 Davidia involucrata HOM05D003894 ORTHO05D004584 3.1e-18 96.3 64 59.4
Eucgr.D02094 Eucalyptus grandis HOM05D003894 ORTHO05D004584 3.1e-18 96.3 64 60.9
CiPaw.12G051400 Carya illinoinensis HOM05D003894 ORTHO05D004584 4.0e-18 95.9 64 60.9
MD06G1056700 Malus domestica HOM05D003894 ORTHO05D004584 4.0e-18 95.9 64 57.8
Nitab4.5_0002289g0080 Nicotiana tabacum HOM05D003894 ORTHO05D004584 4.0e-18 95.9 64 59.4
Actinidia14416 Actinidia chinensis HOM05D003894 ORTHO05D004584 5.3e-18 95.5 64 60.9
CSS0010253 Camellia sinensis var. sinensis HOM05D003894 ORTHO05D004584 5.3e-18 95.5 64 60.9
CSS0035779 Camellia sinensis var. sinensis HOM05D003894 ORTHO05D004584 5.3e-18 95.5 64 60.9
CAN.G62.34 Capsicum annuum HOM05D003894 ORTHO05D004584 5.3e-18 95.5 64 60.9
Ciclev10020835m.g Citrus clementina HOM05D003894 ORTHO05D004584 5.3e-18 95.5 64 60.9
Lsat_1_v5_gn_1_54820 Lactuca sativa HOM05D003894 ORTHO05D004584 5.3e-18 95.5 64 60.9
Lsat_1_v5_gn_7_43960 Lactuca sativa HOM05D003894 ORTHO05D004584 5.3e-18 95.5 64 60.9
Lsat_1_v5_gn_8_19200 Lactuca sativa HOM05D003894 ORTHO05D004584 5.3e-18 95.5 64 60.9
FvH4_5g19130 Fragaria vesca HOM05D003894 ORTHO05D004584 6.9e-18 95.1 64 62.5
FAN04G2823 Fragaria x ananassa HOM05D003894 ORTHO05D004584 6.9e-18 95.1 64 62.5
FAN08G0890 Fragaria x ananassa HOM05D003894 ORTHO05D004584 6.9e-18 95.1 64 62.5
FAN18G1468 Fragaria x ananassa HOM05D003894 ORTHO05D004584 6.9e-18 95.1 64 62.5
Gohir.A08G169100 Gossypium hirsutum HOM05D003894 ORTHO05D004584 6.9e-18 95.1 64 59.4
Gorai.004G197200 Gossypium raimondii HOM05D003894 ORTHO05D004584 6.9e-18 95.1 64 59.4
Prupe.5G067100 Prunus persica HOM05D003894 ORTHO05D004584 6.9e-18 95.1 64 59.4
Rhsim11G0023700 Rhododendron simsii HOM05D003894 ORTHO05D004584 6.9e-18 95.1 64 60.9
Sopen08g026970 Solanum pennellii HOM05D003894 ORTHO05D004584 6.9e-18 95.1 64 57.8
RcHm_v2.0_Chr7g0203621 Rosa chinensis HOM05D003894 ORTHO05D004584 9.0e-18 94.7 64 60.9
GSVIVG01004722001 Vitis vinifera HOM05D003894 ORTHO05D004584 9.0e-18 94.7 64 60.9
Sc22g0000940 Simmondsia chinensis HOM05D003894 ORTHO05D004584 1.2e-17 94.4 64 60.9
PGSC0003DMG401011882 Solanum tuberosum HOM05D003894 ORTHO05D004584 1.2e-17 94.4 64 60.9
Thecc.03G249300 Theobroma cacao HOM05D003894 ORTHO05D004584 1.5e-17 94.0 64 59.4
ClCG10G002550 Citrullus lanatus HOM05D003894 ORTHO05D004584 2.0e-17 93.6 64 62.5
Glyma.01G208000 Glycine max HOM05D003894 ORTHO05D004584 2.0e-17 93.6 64 57.8
Lalb_Chr05g0214381 Lupinus albus HOM05D003894 ORTHO05D004584 2.0e-17 93.6 64 62.5
Phvul.002G057400 Phaseolus vulgaris HOM05D003894 ORTHO05D004584 2.0e-17 93.6 64 59.4
Sed0006464 Sechium edule HOM05D003894 ORTHO05D004584 2.0e-17 93.6 66 59.1
MSTRG.12111 Avicennia marina HOM05D003894 ORTHO05D004584 2.6e-17 93.2 64 62.5
CDE02G2221 Ceratophyllum demersum HOM05D003894 ORTHO05D004584 2.6e-17 93.2 64 57.8
COL.COLO4_37151 Corchorus olitorius HOM05D003894 ORTHO05D004584 2.6e-17 93.2 64 57.8
Oeu064622.1 Olea europaea HOM05D003894 ORTHO05D004584 2.6e-17 93.2 64 62.5
Sabra01G0134600 Salix brachista HOM05D003894 ORTHO05D004584 2.6e-17 93.2 64 59.4
Solyc08g078490.4 Solanum lycopersicum HOM05D003894 ORTHO05D004584 2.6e-17 93.2 64 56.2
EL10Ac5g12379 Beta vulgaris HOM05D003894 ORTHO05D004584 3.4e-17 92.8 64 62.5
Hma1.2p1_0316F.1_g122980 Hydrangea macrophylla HOM05D003894 ORTHO05D004584 3.4e-17 92.8 64 57.8
CSS0041030 Camellia sinensis var. sinensis HOM05D003894 ORTHO05D004584 4.5e-17 92.4 64 57.8
Potri.003G078000 Populus trichocarpa HOM05D003894 ORTHO05D004584 4.5e-17 92.4 64 57.8
unitig_22.g6241 Utricularia gibba HOM05D003894 ORTHO05D004584 4.5e-17 92.4 63 57.1
CANSAT21G2005 Cannabis sativa HOM05D003894 ORTHO05D004584 5.8e-17 92.0 64 59.4
CDE04G1229 Ceratophyllum demersum HOM05D003894 ORTHO05D004584 5.8e-17 92.0 64 57.8
MELO3C013927.2 Cucumis melo HOM05D003894 ORTHO05D004584 5.8e-17 92.0 64 60.9
CsaV3_3G002580 Cucumis sativus L. HOM05D003894 ORTHO05D004584 5.8e-17 92.0 64 60.9
Gohir.D08G187500 Gossypium hirsutum HOM05D003894 ORTHO05D004584 5.8e-17 92.0 64 57.8
SGA_v2.0_scaffold104G30167 Striga asiatica HOM05D003894 ORTHO05D004584 5.8e-17 92.0 64 59.4
VMungo1215G1221 Vigna mungo HOM05D003894 ORTHO05D004584 5.8e-17 92.0 64 56.2
CiPaw.11G080600 Carya illinoinensis HOM05D003894 ORTHO05D004584 1.0e-16 91.3 64 57.8
DCAR_008499 Daucus carota HOM05D003894 ORTHO05D004584 1.0e-16 91.3 64 59.4
Gohir.A03G007600 Gossypium hirsutum HOM05D003894 ORTHO05D004584 1.0e-16 91.3 64 56.2
PSO017G7068 Papaver somniferum HOM05D003894 ORTHO05D004584 1.0e-16 91.3 64 54.7
PSO170G4158 Papaver somniferum HOM05D003894 ORTHO05D004584 1.0e-16 91.3 64 54.7
TAR629G1092 Trochodendron aralioides HOM05D003894 ORTHO05D004584 1.0e-16 91.3 64 57.8
vmacro00193 Vaccinium macrocarpon HOM05D003894 ORTHO05D004584 1.0e-16 91.3 64 59.4
Migut.A01116 Erythranthe guttata HOM05D003894 ORTHO05D004584 1.3e-16 90.9 64 59.4
Gorai.003G172100 Gossypium raimondii HOM05D003894 ORTHO05D004584 1.3e-16 90.9 64 56.2
PGSC0003DMG401004821 Solanum tuberosum HOM05D003894 ORTHO05D004584 1.3e-16 90.9 64 54.7
Duzib205G0957 Durio zibethinus HOM05D003894 ORTHO05D004584 2.2e-16 90.1 64 57.8
ATR0317G052 Amborella trichopoda HOM05D003894 ORTHO05D004584 2.9e-16 89.7 88 47.7
Cc08_g12260 Coffea canephora HOM05D003894 ORTHO05D004584 2.9e-16 89.7 97 44.3
Psat2g176960 Pisum sativum HOM05D003894 ORTHO05D004584 4.9e-16 89.0 64 53.1
Ca_24586_v3 Cicer arietinum L. HOM05D003894 ORTHO05D004584 6.5e-16 88.6 64 56.2
Medtr5g012850 Medicago truncatula HOM05D003894 ORTHO05D004584 6.5e-16 88.6 64 56.2
Sabra03G0048400 Salix brachista HOM05D003894 ORTHO05D004584 8.4e-16 88.2 64 54.7
DCAR_006838 Daucus carota HOM05D003894 ORTHO05D004584 1.1e-15 87.8 64 57.8
Gohir.D03G163400 Gossypium hirsutum HOM05D003894 ORTHO05D004584 1.4e-15 87.4 64 54.7
Manes.01G081900 Manihot esculenta HOM05D003894 ORTHO05D004584 1.4e-15 87.4 64 51.6
SEGI_14746 Sequoiadendron giganteum HOM05D003894 ORTHO05D004584 1.4e-15 87.4 64 54.7
TPR.G18144 Trifolium pratense HOM05D003894 ORTHO05D004584 1.4e-15 87.4 64 53.1
ECA233G0588 Erigeron canadensis HOM05D003894 ORTHO05D004584 2.5e-15 86.7 61 60.7
Lj8A264T58 Lonicera japonica HOM05D003894 ORTHO05D004584 4.2e-15 85.9 77 51.9
Os03g0102100 Oryza sativa ssp. japonica HOM05D003894 ORTHO05D004584 5.5e-15 85.5 92 42.4
Peaxi162Scf00209g00012 Petunia axillaris HOM05D003894 ORTHO05D004584 1.8e-13 80.5 53 60.4
Lsat_1_v5_gn_0_29701 Lactuca sativa HOM05D003894 ORTHO05D004584 3.9e-13 79.3 55 60.0
Lsat_1_v5_gn_3_140581 Lactuca sativa HOM05D003894 ORTHO05D004584 3.9e-13 79.3 55 60.0
Lsat_1_v5_gn_4_3501 Lactuca sativa HOM05D003894 ORTHO05D004584 3.9e-13 79.3 55 60.0
Lsat_1_v5_gn_6_107601 Lactuca sativa HOM05D003894 ORTHO05D004584 3.9e-13 79.3 55 60.0
Lsat_1_v5_gn_6_98401 Lactuca sativa HOM05D003894 ORTHO05D004584 3.9e-13 79.3 55 60.0
Lsat_1_v5_gn_7_52220 Lactuca sativa HOM05D003894 ORTHO05D004584 3.9e-13 79.3 55 60.0
Lsat_1_v5_gn_8_116920 Lactuca sativa HOM05D003894 ORTHO05D004584 3.9e-13 79.3 55 60.0
Zm00001eb404490 Zea mays HOM05D003894 ORTHO05D004584 3.9e-13 79.3 64 48.4
AagrBONN_evm.TU.Sc2ySwM_117.1331 Anthoceros agrestis HOM05D003894 ORTHO05D004584 8.7e-13 78.2 64 46.9
Pp3c2_3170 Physcomitrium patens HOM05D003894 ORTHO05D004584 4.3e-12 75.9 64 48.4
Pp3c14_22020 Physcomitrium patens HOM05D003894 ORTHO05D004584 7.4e-12 75.1 64 45.3
Aqoxy7G00816 Aquilegia oxysepala HOM05D003894 ORTHO05D004584 1.3e-11 74.3 61 47.5
Potri.001G156600 Populus trichocarpa HOM05D003894 ORTHO05D004584 1.3e-11 74.3 53 56.6
Pp3c1_39510 Physcomitrium patens HOM05D003894 ORTHO05D004584 2.1e-11 73.6 63 47.6
SMO146G0337 Selaginella moellendorffii HOM05D003894 ORTHO05D004584 4.1e-10 69.3 64 46.9
HPP92_025623 Vanilla planifolia HOM05D003894 ORTHO05D004584 5.9e-09 65.5 86 39.5
Mapoly0048s0089 Marchantia polymorpha HOM05D003894 ORTHO05D004584 5.0e-08 62.4 52 51.9
Duzib084G0486 Durio zibethinus HOM05D003894 ORTHO05D004584 8.5e-08 61.6 47 53.2
Glyma.11G034300 Glycine max HOM05D003894 ORTHO05D004584 8.5e-08 61.6 41 58.5
C03p86340 Brassica napus HOM05D002488 ORTHO05D027689 4.2e-07 59.3 33 90.9


User provided reference genes

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