Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB08g34597 Brassica carinata HOM05D003018 ORTHO05D003402 5.5e-62 240.7 116 100.0
BcaC06g31154 Brassica carinata HOM05D003018 ORTHO05D032594 4.0e-12 75.1 42 81.0
C07p34120 Brassica napus HOM05D003018 ORTHO05D032594 4.0e-12 75.1 42 81.0
BolC7t43926H Brassica oleracea HOM05D003018 ORTHO05D032594 4.0e-12 75.1 42 81.0
BcaC06g31152 Brassica carinata HOM05D003018 ORTHO05D003402 2.2e-10 69.3 42 78.6
C07p34140 Brassica napus HOM05D003018 ORTHO05D003402 2.2e-10 69.3 42 78.6
BolC7t43927H Brassica oleracea HOM05D003018 ORTHO05D003402 2.2e-10 69.3 42 78.6
BolC7t43940H Brassica oleracea HOM05D003018 ORTHO05D003402 2.2e-10 69.3 42 78.6
BcaB08g34602 Brassica carinata HOM05D003018 ORTHO05D003402 2.8e-10 68.9 42 73.8
BcaC06g31150 Brassica carinata HOM05D003018 ORTHO05D003402 4.8e-10 68.2 42 73.8
C07p34160 Brassica napus HOM05D003018 ORTHO05D003402 4.8e-10 68.2 42 73.8
BolC7t43931H Brassica oleracea HOM05D003018 ORTHO05D003402 4.8e-10 68.2 42 73.8
A06p42910 Brassica napus HOM05D003018 ORTHO05D003402 1.1e-09 67.0 42 73.8
A06p42880 Brassica napus HOM05D003018 ORTHO05D003402 4.1e-09 65.1 42 73.8
BraA06t27200Z Brassica rapa HOM05D003018 ORTHO05D003402 4.1e-09 65.1 42 73.8
BcaC06g31155 Brassica carinata HOM05D003018 ORTHO05D003402 7.0e-09 64.3 42 71.4
BolC7t43925H Brassica oleracea HOM05D003018 ORTHO05D003402 7.0e-09 64.3 42 71.4
BcaB08g34598 Brassica carinata HOM05D003018 ORTHO05D003402 5.9e-08 61.2 46 67.4
THA.LOC104798993 Tarenaya hassleriana HOM05D003018 ORTHO05D003402 5.9e-08 61.2 46 60.9
AL5G29400 Arabidopsis lyrata HOM05D003018 ORTHO05D003402 1.7e-07 59.7 46 58.7
AT3G49560 Arabidopsis thaliana HOM05D003018 ORTHO05D003402 1.7e-07 59.7 46 58.7
Eucgr.K00480 Eucalyptus grandis HOM05D003018 ORTHO05D003402 3.8e-07 58.5 42 64.3
Eucgr.K00528 Eucalyptus grandis HOM05D003018 ORTHO05D003402 3.8e-07 58.5 42 64.3
Migut.F00122 Erythranthe guttata HOM05D003018 ORTHO05D003402 5.0e-07 58.2 58 46.6
Sc19g0000360 Simmondsia chinensis HOM05D003018 ORTHO05D003402 5.0e-07 58.2 44 59.1
Carub.0005s1589 Capsella rubella HOM05D003018 ORTHO05D003402 6.6e-07 57.8 46 56.5
HanXRQChr10g0283991 Helianthus annuus HOM05D003018 ORTHO05D003402 6.6e-07 57.8 42 64.3
HanXRQChr16g0499771 Helianthus annuus HOM05D003018 ORTHO05D003402 6.6e-07 57.8 42 64.3
vmacro06209 Vaccinium macrocarpon HOM05D003018 ORTHO05D003502 6.6e-07 57.8 42 66.7
AL6G36250 Arabidopsis lyrata HOM05D003018 ORTHO05D003402 8.6e-07 57.4 46 56.5
AT5G24650 Arabidopsis thaliana HOM05D003018 ORTHO05D003402 8.6e-07 57.4 46 56.5
CARHR188810 Cardamine hirsuta HOM05D003018 ORTHO05D003402 8.6e-07 57.4 46 56.5
Aa31LG4G18050 Aethionema arabicum HOM05D003018 ORTHO05D003402 1.1e-06 57.0 42 64.3
Duzib084G0455 Durio zibethinus HOM05D003018 ORTHO05D003402 1.1e-06 57.0 42 61.9
SMO356G0102 Selaginella moellendorffii HOM05D003018 ORTHO05D003402 1.1e-06 57.0 46 58.7
unitig_52.g16865 Utricularia gibba HOM05D003018 ORTHO05D003402 1.1e-06 57.0 42 61.9
BcaC07g39417 Brassica carinata HOM05D003018 ORTHO05D003402 1.5e-06 56.6 60 45.0
Ciclev10021773m.g Citrus clementina HOM05D003018 ORTHO05D003402 1.5e-06 56.6 42 64.3
SGA_v2.0_scaffold165G38214 Striga asiatica HOM05D003018 ORTHO05D003402 1.5e-06 56.6 42 64.3
Zm00001eb242440 Zea mays HOM05D003018 ORTHO05D003402 1.5e-06 56.6 42 64.3
Dinv29191 Davidia involucrata HOM05D003018 ORTHO05D003402 1.9e-06 56.2 42 61.9
Migut.F00968 Erythranthe guttata HOM05D003018 ORTHO05D003402 1.9e-06 56.2 42 59.5
RcHm_v2.0_Chr1g0383311 Rosa chinensis HOM05D003018 ORTHO05D003402 1.9e-06 56.2 42 61.9
Sed0009908 Sechium edule HOM05D003018 ORTHO05D003402 1.9e-06 56.2 58 46.6
Carub.0006s2250 Capsella rubella HOM05D003018 ORTHO05D003402 2.5e-06 55.8 46 54.3
Os04g0405100 Oryza sativa ssp. japonica HOM05D003018 ORTHO05D003402 2.5e-06 55.8 58 46.6
unitig_62.g23859 Utricularia gibba HOM05D003018 ORTHO05D003402 2.5e-06 55.8 42 59.5
unitig_64.g29776 Utricularia gibba HOM05D000525 ORTHO05D001368 2.5e-06 55.8 42 59.5
BcaB01g00697 Brassica carinata HOM05D003018 ORTHO05D003402 3.3e-06 55.5 46 54.3
BcaNung01249 Brassica carinata HOM05D003018 ORTHO05D003402 3.3e-06 55.5 58 50.0
A06p18200 Brassica napus HOM05D003018 ORTHO05D003402 3.3e-06 55.5 46 54.3
C08p24540 Brassica napus HOM05D003018 ORTHO05D003402 3.3e-06 55.5 46 54.3
BolC8t50072H Brassica oleracea HOM05D003018 ORTHO05D003402 3.3e-06 55.5 46 54.3
BraA06t24904Z Brassica rapa HOM05D003018 ORTHO05D003402 3.3e-06 55.5 46 54.3
CARHR158570 Cardamine hirsuta HOM05D003018 ORTHO05D003402 3.3e-06 55.5 46 54.3
DCAR_010557 Daucus carota HOM05D003018 ORTHO05D003402 3.3e-06 55.5 42 61.9
ECA232G4756 Erigeron canadensis HOM05D003018 ORTHO05D003402 3.3e-06 55.5 42 59.5
Gohir.A12G244400 Gossypium hirsutum HOM05D003018 ORTHO05D003402 3.3e-06 55.5 42 61.9
Gohir.D11G016900 Gossypium hirsutum HOM05D003018 ORTHO05D003402 3.3e-06 55.5 60 45.0
Gohir.D12G245300 Gossypium hirsutum HOM05D003018 ORTHO05D003402 3.3e-06 55.5 42 61.9
Gorai.008G262900 Gossypium raimondii HOM05D003018 ORTHO05D003402 3.3e-06 55.5 42 61.9
Manes.05G197500 Manihot esculenta HOM05D003018 ORTHO05D003402 3.3e-06 55.5 42 61.9
Nn2g15903 Nelumbo nucifera HOM05D003018 ORTHO05D003402 3.3e-06 55.5 58 44.8
Nitab4.5_0007121g0040 Nicotiana tabacum HOM05D003018 ORTHO05D003402 3.3e-06 55.5 42 61.9
Potri.015G000600 Populus trichocarpa HOM05D003018 ORTHO05D003402 3.3e-06 55.5 42 61.9
SalBow4G0431 Salvia bowleyana HOM05D003018 ORTHO05D003402 3.3e-06 55.5 42 59.5
Sp5g12550 Schrenkiella parvula HOM05D003018 ORTHO05D003402 3.3e-06 55.5 46 54.3
Aa31LG11G3900 Aethionema arabicum HOM05D003018 ORTHO05D003402 4.2e-06 55.1 46 54.3
arahy.Tifrunner.gnm1.ann1.KA8TW6 Arachis hypogaea HOM05D003018 ORTHO05D003402 4.2e-06 55.1 42 61.9
arahy.Tifrunner.gnm1.ann1.SR3247 Arachis hypogaea HOM05D003018 ORTHO05D003402 4.2e-06 55.1 42 61.9
BcaNung02005 Brassica carinata HOM05D003018 ORTHO05D003402 4.2e-06 55.1 46 54.3
A06p35470 Brassica napus HOM05D003018 ORTHO05D003402 4.2e-06 55.1 46 54.3
C07p43070 Brassica napus HOM05D003018 ORTHO05D003402 4.2e-06 55.1 46 54.3
C08p05060 Brassica napus HOM05D003018 ORTHO05D003402 4.2e-06 55.1 46 54.3
BolC7t44834H Brassica oleracea HOM05D003018 ORTHO05D003402 4.2e-06 55.1 46 54.3
BraA06t26470Z Brassica rapa HOM05D003018 ORTHO05D003402 4.2e-06 55.1 46 54.3
CSS0041512 Camellia sinensis var. sinensis HOM05D003018 ORTHO05D003402 4.2e-06 55.1 42 59.5
CiPaw.06G038200 Carya illinoinensis HOM05D003018 ORTHO05D003402 4.2e-06 55.1 42 59.5
CsaV3_5G000150 Cucumis sativus L. HOM05D003018 ORTHO05D003402 4.2e-06 55.1 42 59.5
Thhalv10004788m.g Eutrema salsugineum HOM05D003018 ORTHO05D003402 4.2e-06 55.1 46 54.3
FAN10G1538 Fragaria x ananassa HOM05D003018 ORTHO05D003402 4.2e-06 55.1 42 61.9
PSO017G1017 Papaver somniferum HOM05D003018 ORTHO05D003402 4.2e-06 55.1 42 59.5
PSO478G2764 Papaver somniferum HOM05D003018 ORTHO05D003402 4.2e-06 55.1 42 59.5
Sp2g22740 Schrenkiella parvula HOM05D003018 ORTHO05D003402 4.2e-06 55.1 46 54.3
Solyc03g079940.3 Solanum lycopersicum HOM05D003018 ORTHO05D003402 4.2e-06 55.1 42 59.5
Sopen03g027480 Solanum pennellii HOM05D003018 ORTHO05D003402 4.2e-06 55.1 42 59.5
Thecc.03G212100 Theobroma cacao HOM05D003018 ORTHO05D003402 4.2e-06 55.1 60 45.0
HPP92_007053 Vanilla planifolia HOM05D003018 ORTHO05D003402 4.2e-06 55.1 59 49.2
Atru.chr12.2524 Acer truncatum HOM05D003018 ORTHO05D003402 5.5e-06 54.7 42 59.5
CANSAT21G0709 Cannabis sativa HOM05D003018 ORTHO05D003402 5.5e-06 54.7 42 59.5
Duzib068G0518 Durio zibethinus HOM05D003018 ORTHO05D003402 5.5e-06 54.7 42 59.5
FvH4_7g33330 Fragaria vesca HOM05D003018 ORTHO05D003402 5.5e-06 54.7 42 61.9
Gohir.A11G017100 Gossypium hirsutum HOM05D003018 ORTHO05D003402 5.5e-06 54.7 42 59.5
PSO832G1145 Papaver somniferum HOM05D003018 ORTHO05D003402 5.5e-06 54.7 42 54.8
PGR142G0210 Punica granatum HOM05D003018 ORTHO05D003402 5.5e-06 54.7 42 59.5
TAR374G1266 Trochodendron aralioides HOM05D003018 ORTHO05D003402 5.5e-06 54.7 42 59.5
Thhalv10010930m.g Eutrema salsugineum HOM05D003018 ORTHO05D003402 7.2e-06 54.3 46 52.2
FAN03G3459 Fragaria x ananassa HOM05D003018 ORTHO05D003402 7.2e-06 54.3 42 61.9
Glyma.04G225600 Glycine max HOM05D003018 ORTHO05D003402 7.2e-06 54.3 42 59.5
Glyma.06G139200 Glycine max HOM05D003018 ORTHO05D003402 7.2e-06 54.3 42 59.5
Gohir.A09G187100 Gossypium hirsutum HOM05D003018 ORTHO05D003402 7.2e-06 54.3 42 59.5
Gorai.006G203900 Gossypium raimondii HOM05D003018 ORTHO05D003402 7.2e-06 54.3 42 59.5
Lj3C891T18 Lonicera japonica HOM05D003018 ORTHO05D003402 7.2e-06 54.3 42 59.5
Lalb_Chr08g0239401 Lupinus albus HOM05D003018 ORTHO05D003402 7.2e-06 54.3 58 46.6
Potri.012G004600 Populus trichocarpa HOM05D003018 ORTHO05D003402 7.2e-06 54.3 42 59.5
PGR042G2079 Punica granatum HOM05D003018 ORTHO05D003402 7.2e-06 54.3 58 46.6
SEGI_14341 Sequoiadendron giganteum HOM05D003018 ORTHO05D003402 7.2e-06 54.3 42 59.5
THA.LOC104814958 Tarenaya hassleriana HOM05D003018 ORTHO05D003402 7.2e-06 54.3 58 50.0
GSVIVG01038683001 Vitis vinifera HOM05D003018 ORTHO05D003402 7.2e-06 54.3 42 59.5
Zm00001eb181270 Zea mays HOM05D003018 ORTHO05D003402 7.2e-06 54.3 42 59.5
Aqoxy5G02912 Aquilegia oxysepala HOM05D003018 ORTHO05D003402 9.5e-06 53.9 42 57.1
MSTRG.26952 Avicennia marina HOM05D003018 ORTHO05D003402 9.5e-06 53.9 42 61.9
EL10Ac3g05130 Beta vulgaris HOM05D003018 ORTHO05D003402 9.5e-06 53.9 42 59.5


User provided reference genes

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