Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB08g34453 Brassica carinata HOM05D006330 ORTHO05D008013 1.2e-169 599.7 306 100.0
C03p54570 Brassica napus HOM05D006330 ORTHO05D008013 8.5e-163 577.0 306 96.1
BolC3t17744H Brassica oleracea HOM05D006330 ORTHO05D008013 8.5e-163 577.0 306 96.1
A03p44190 Brassica napus HOM05D006330 ORTHO05D008013 2.1e-161 572.4 306 95.4
BraA03t13548Z Brassica rapa HOM05D006330 ORTHO05D008013 2.1e-161 572.4 306 95.4
Sp3g22990 Schrenkiella parvula HOM05D006330 ORTHO05D008013 1.1e-154 550.1 304 91.4
BcaC06g35817 Brassica carinata HOM05D006330 ORTHO05D008013 3.2e-154 548.5 302 92.4
A07p06930 Brassica napus HOM05D006330 ORTHO05D008013 1.2e-153 546.6 302 91.7
BraA07t28484Z Brassica rapa HOM05D006330 ORTHO05D008013 1.2e-153 546.6 302 91.7
BolC7t41520H Brassica oleracea HOM05D006330 ORTHO05D008013 8.0e-153 543.9 303 92.1
C07p10530 Brassica napus HOM05D006330 ORTHO05D008013 6.7e-152 540.8 303 91.7
BcaC01g03225 Brassica carinata HOM05D006330 ORTHO05D008013 1.7e-150 536.2 306 91.2
Thhalv10002617m.g Eutrema salsugineum HOM05D006330 ORTHO05D008013 6.3e-150 534.3 303 89.1
AL3G41590 Arabidopsis lyrata HOM05D006330 ORTHO05D008013 2.3e-144 515.8 305 85.9
CARHR101770 Cardamine hirsuta HOM05D006330 ORTHO05D008013 4.4e-143 511.5 304 84.9
AT3G25470 Arabidopsis thaliana HOM05D006330 ORTHO05D008013 5.7e-143 511.1 306 85.0
Carub.0003s2579 Capsella rubella HOM05D006330 ORTHO05D008013 1.3e-139 500.0 305 83.3
BcaB06g26747 Brassica carinata HOM05D006330 ORTHO05D008013 3.3e-130 468.8 308 80.8
Aa31sc18G40 Aethionema arabicum HOM05D006330 ORTHO05D008013 9.5e-130 467.2 300 80.0
THA.LOC104804704 Tarenaya hassleriana HOM05D006330 ORTHO05D008013 4.7e-121 438.3 310 72.3
Actinidia23802 Actinidia chinensis HOM05D006330 ORTHO05D008013 1.2e-111 407.1 305 69.2
Actinidia34530 Actinidia chinensis HOM05D006330 ORTHO05D008013 4.4e-111 405.2 313 69.3
GSVIVG01001532001 Vitis vinifera HOM05D006330 ORTHO05D008013 1.1e-106 390.6 289 71.3
Lalb_Chr12g0210221 Lupinus albus HOM05D006330 ORTHO05D008013 1.9e-106 389.8 308 65.9
RcHm_v2.0_Chr6g0282221 Rosa chinensis HOM05D006330 ORTHO05D008013 3.3e-106 389.0 312 66.3
MELO3C021126.2 Cucumis melo HOM05D006330 ORTHO05D008013 5.6e-106 388.3 249 77.1
CsaV3_7G026730 Cucumis sativus L. HOM05D006330 ORTHO05D008013 7.3e-106 387.9 249 77.1
PGR044G2230 Punica granatum HOM05D006330 ORTHO05D008013 4.7e-105 385.2 263 73.0
QL09p047707 Quercus lobata HOM05D006330 ORTHO05D008013 1.1e-104 384.0 302 67.9
Atru.chr6.3528 Acer truncatum HOM05D006330 ORTHO05D008013 1.4e-104 383.6 302 67.9
FAN15G1514 Fragaria x ananassa HOM05D006330 ORTHO05D008013 1.8e-104 383.3 302 67.5
Manes.12G055500 Manihot esculenta HOM05D006330 ORTHO05D008013 2.3e-104 382.9 304 66.4
Phvul.010G036400 Phaseolus vulgaris HOM05D006330 ORTHO05D008013 2.3e-104 382.9 314 65.3
TAR362G0826 Trochodendron aralioides HOM05D006330 ORTHO05D008013 4.0e-104 382.1 299 68.2
AUR62008069 Chenopodium quinoa HOM05D006330 ORTHO05D008013 5.2e-104 381.7 239 77.0
ClCG09G008360 Citrullus lanatus HOM05D006330 ORTHO05D008013 5.2e-104 381.7 279 70.3
MBI10_g35385_MAGBIO Magnolia biondii HOM05D006330 ORTHO05D008013 5.2e-104 381.7 298 68.1
Prupe.8G187200 Prunus persica HOM05D006330 ORTHO05D008013 5.2e-104 381.7 302 65.9
TWI36G1481 Tripterygium wilfordii HOM05D006330 ORTHO05D008013 5.2e-104 381.7 310 65.2
Cc01_g15880 Coffea canephora HOM05D006330 ORTHO05D008013 6.8e-104 381.3 304 67.8
Haze_03505 Corylus avellana HOM05D006330 ORTHO05D008013 1.2e-103 380.6 302 67.2
Gorai.007G161200 Gossypium raimondii HOM05D006330 ORTHO05D008013 1.2e-103 380.6 297 66.3
FvH4_2g17480 Fragaria vesca HOM05D006330 ORTHO05D008013 1.5e-103 380.2 302 66.9
EL10Ac5g10587 Beta vulgaris HOM05D006330 ORTHO05D008013 2.0e-103 379.8 281 67.6
Cfa010572 Carpinus fangiana HOM05D006330 ORTHO05D008013 4.4e-103 378.6 302 66.6
Glyma.07G124200 Glycine max HOM05D006330 ORTHO05D008013 4.4e-103 378.6 316 65.2
Gohir.D11G150300 Gossypium hirsutum HOM05D006330 ORTHO05D008013 4.4e-103 378.6 297 66.0
Sed0009827 Sechium edule HOM05D006330 ORTHO05D008013 4.4e-103 378.6 292 67.5
Aqoxy2G02383 Aquilegia oxysepala HOM05D006330 ORTHO05D008013 5.8e-103 378.3 269 69.9
Eucgr.K02361 Eucalyptus grandis HOM05D006330 ORTHO05D008013 1.7e-102 376.7 254 73.6
CANSAT01G2136 Cannabis sativa HOM05D006330 ORTHO05D008013 2.2e-102 376.3 284 69.4
Duzib133G1456 Durio zibethinus HOM05D006330 ORTHO05D008013 2.2e-102 376.3 282 70.2
Gohir.A11G143900 Gossypium hirsutum HOM05D006330 ORTHO05D008013 2.2e-102 376.3 297 66.0
CiPaw.13G055600 Carya illinoinensis HOM05D006330 ORTHO05D008013 2.9e-102 375.9 302 65.9
Glyma.03G097100 Glycine max HOM05D006330 ORTHO05D008013 3.7e-102 375.6 316 64.6
Nn7g37444 Nelumbo nucifera HOM05D006330 ORTHO05D008013 6.4e-102 374.8 302 67.9
Sopen09g015980 Solanum pennellii HOM05D006330 ORTHO05D008013 6.4e-102 374.8 307 65.1
FAN24G2605 Fragaria x ananassa HOM05D006330 ORTHO05D008013 1.1e-101 374.0 240 77.5
Thecc.01G207700 Theobroma cacao HOM05D006330 ORTHO05D008013 1.4e-101 373.6 240 76.7
Medtr8g010130 Medicago truncatula HOM05D006330 ORTHO05D008013 3.2e-101 372.5 289 67.8
Rhsim01G0247700 Rhododendron simsii HOM05D006330 ORTHO05D008013 7.1e-101 371.3 341 58.9
MD10G1148200 Malus domestica HOM05D006330 ORTHO05D008013 9.2e-101 370.9 291 66.7
VMungo0331G1131 Vigna mungo HOM05D006330 ORTHO05D008013 9.2e-101 370.9 276 70.3
Psat4g208240 Pisum sativum HOM05D006330 ORTHO05D008013 1.2e-100 370.5 298 66.4
Potri.014G175500 Populus trichocarpa HOM05D006330 ORTHO05D008013 1.2e-100 370.5 240 77.5
TPR.G17377 Trifolium pratense HOM05D006330 ORTHO05D008013 1.6e-100 370.2 288 67.7
CDE02G1604 Ceratophyllum demersum HOM05D006330 ORTHO05D008013 2.1e-100 369.8 242 76.0
Ca_23158_v3 Cicer arietinum L. HOM05D006330 ORTHO05D008013 2.1e-100 369.8 270 70.7
ATR0743G141 Amborella trichopoda HOM05D006330 ORTHO05D008013 7.8e-100 367.9 242 75.6
Lsat_1_v5_gn_9_16880 Lactuca sativa HOM05D006330 ORTHO05D008013 1.3e-99 367.1 280 66.8
Ciclev10015989m.g Citrus clementina HOM05D006330 ORTHO05D008013 1.7e-99 366.7 316 62.7
Sc05g0001630 Simmondsia chinensis HOM05D006330 ORTHO05D008013 3.9e-99 365.5 301 64.1
arahy.Tifrunner.gnm1.ann1.84ZR2Z Arachis hypogaea HOM05D006330 ORTHO05D008013 2.5e-98 362.8 245 73.9
HanXRQChr07g0190561 Helianthus annuus HOM05D006330 ORTHO05D008013 2.5e-98 362.8 290 65.9
Lj2C1112G6 Lonicera japonica HOM05D006330 ORTHO05D008013 3.3e-98 362.5 261 70.5
arahy.Tifrunner.gnm1.ann1.3RIK1P Arachis hypogaea HOM05D006330 ORTHO05D008013 2.1e-97 359.8 245 73.5
HPP92_007591 Vanilla planifolia HOM05D006330 ORTHO05D008013 2.1e-97 359.8 240 74.2
MSTRG.21296 Avicennia marina HOM05D006330 ORTHO05D008013 1.1e-96 357.5 248 71.8
PSO675G8704 Papaver somniferum HOM05D006330 ORTHO05D008013 1.8e-96 356.7 309 61.8
vmacro14689 Vaccinium macrocarpon HOM05D006330 ORTHO05D008013 2.4e-96 356.3 269 68.0
SGA_v2.0_scaffold231G43447 Striga asiatica HOM05D006330 ORTHO05D008013 1.5e-95 353.6 300 62.3
ECA247G1307 Erigeron canadensis HOM05D006330 ORTHO05D008013 2.0e-95 353.2 242 72.3
Os11g0247400 Oryza sativa ssp. japonica HOM05D006330 ORTHO05D008013 2.0e-95 353.2 250 71.2
SalBow3G0290 Salvia bowleyana HOM05D006330 ORTHO05D008013 4.4e-95 352.1 277 65.0
Zm00001eb168340 Zea mays HOM05D006330 ORTHO05D008013 5.8e-95 351.7 248 70.6
DCAR_004774 Daucus carota HOM05D006330 ORTHO05D008013 7.6e-95 351.3 240 71.2
Migut.D00775 Erythranthe guttata HOM05D006330 ORTHO05D008013 2.9e-94 349.4 296 62.8
Hund09482 Selenicereus undatus HOM05D006330 ORTHO05D008013 1.9e-93 346.7 223 77.1
Hma1.2p1_0161F.1_g071650 Hydrangea macrophylla HOM05D006330 ORTHO05D008013 1.0e-91 340.9 240 72.1
Pp3c24_1560 Physcomitrium patens HOM05D006330 ORTHO05D008013 2.3e-91 339.7 293 60.8
AUR62028646 Chenopodium quinoa HOM05D006330 ORTHO05D008013 3.3e-90 335.9 213 77.0
Mapoly0006s0124 Marchantia polymorpha HOM05D006330 ORTHO05D008013 5.6e-90 335.1 264 63.3
CBR_g60689 Chara braunii HOM05D006330 ORTHO05D008013 8.1e-89 331.3 242 69.0
Ciclev10018050m.g Citrus clementina HOM05D006330 ORTHO05D008013 2.0e-87 326.6 228 72.8
Sabra14G0134300 Salix brachista HOM05D006330 ORTHO05D008013 2.6e-87 326.2 263 66.2
COL.COLO4_34269 Corchorus olitorius HOM05D006330 ORTHO05D008013 4.9e-86 322.0 212 75.9
Lj3g0006219 Lotus japonicus HOM05D006330 ORTHO05D008013 8.7e-83 311.2 248 67.3
SMO141G0006 Selaginella moellendorffii HOM05D006330 ORTHO05D008013 1.9e-82 310.1 255 62.0
CSS0004044 Camellia sinensis var. sinensis HOM05D006330 ORTHO05D008013 4.0e-80 302.4 239 66.9
SMO186G0001 Selaginella moellendorffii HOM05D006330 ORTHO05D008013 1.5e-79 300.4 246 62.2
Nitab4.5_0000038g0340 Nicotiana tabacum HOM05D006330 ORTHO05D008013 2.6e-79 299.7 253 65.6
Peaxi162Scf00841g00112 Petunia axillaris HOM05D006330 ORTHO05D008013 1.3e-78 297.4 316 56.0
Nitab4.5_0010469g0010 Nicotiana tabacum HOM05D006330 ORTHO05D008013 1.7e-78 297.0 254 65.0
Dinv28793 Davidia involucrata HOM05D006330 ORTHO05D008013 1.1e-77 294.3 222 68.9
Oeu049580.1 Olea europaea HOM05D006330 ORTHO05D008013 5.4e-77 292.0 213 69.5
Solyc09g047870.4 Solanum lycopersicum HOM05D006330 ORTHO05D008013 1.3e-75 287.3 204 72.1
MCO07G099 Micromonas commoda HOM05D006330 ORTHO05D008013 2.4e-72 276.6 240 59.2
Cpa.g.sc8.41 Carica papaya HOM05D006330 ORTHO05D008013 5.5e-69 265.4 221 64.7
PSO732G0743 Papaver somniferum HOM05D006330 ORTHO05D008013 7.1e-69 265.0 189 71.4
FAN27G2337 Fragaria x ananassa HOM05D006330 ORTHO05D008013 1.1e-64 251.1 300 50.3
HanXRQChr07g0198371 Helianthus annuus HOM05D006330 ORTHO05D008013 3.2e-61 239.6 182 68.1
Cre10.g428900 Chlamydomonas reinhardtii HOM05D006330 ORTHO05D008013 1.2e-60 237.7 244 54.1
PRCOL_00000451 Prasinoderma coloniale HOM05D006330 ORTHO05D008013 3.1e-56 223.0 313 44.1
CAN.G253.5 Capsicum annuum HOM05D006330 ORTHO05D008013 3.4e-47 193.0 129 73.6
SEGI_37995 Sequoiadendron giganteum HOM05D006330 ORTHO05D008013 1.0e-43 181.4 117 72.6
AagrBONN_evm.TU.Sc2ySwM_368.2380 Anthoceros agrestis HOM05D006330 ORTHO05D008013 9.4e-37 158.3 115 67.0
arahy.Tifrunner.gnm1.ann1.VBTZ6V Arachis hypogaea HOM05D006330 ORTHO05D008013 5.3e-32 142.5 112 62.5
PSO675G8411 Papaver somniferum HOM05D006330 ORTHO05D008013 1.1e-29 134.8 95 65.3
Hma1.2p1_0161F.1_g071660 Hydrangea macrophylla HOM05D006330 ORTHO05D008013 5.2e-27 125.9 82 74.4
Cfa009322 Carpinus fangiana HOM05D006614 ORTHO05D008217 5.9e-23 112.5 85 65.9
CDE04G0367 Ceratophyllum demersum HOM05D006330 ORTHO05D008013 1.3e-22 111.3 85 64.7
BcaB06g26875 Brassica carinata HOM05D006330 ORTHO05D008013 8.5e-22 108.6 64 90.6
VMungo1383G2211 Vigna mungo HOM05D006330 ORTHO05D434633 2.6e-10 70.5 48 70.8
RcHm_v2.0_Chr5g0065021 Rosa chinensis HOM05D006330 ORTHO05D008013 1.0e-06 58.5 46 63.0


User provided reference genes

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