Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB07g34098 Brassica carinata HOM05D006573 ORTHO05D008073 2.4e-251 871.7 444 100.0
BolC5t29425H Brassica oleracea HOM05D006573 ORTHO05D008073 2.6e-245 851.7 453 96.7
C05p06650 Brassica napus HOM05D006573 ORTHO05D008073 7.5e-245 850.1 453 96.2
BraA06t23762Z Brassica rapa HOM05D006573 ORTHO05D008073 2.9e-244 848.2 458 94.5
A06p05540 Brassica napus HOM05D006573 ORTHO05D008073 3.2e-243 844.7 458 94.5
Sp1g07210 Schrenkiella parvula HOM05D006573 ORTHO05D008073 1.0e-225 786.6 460 86.3
Thhalv10007587m.g Eutrema salsugineum HOM05D006573 ORTHO05D008073 1.9e-219 765.8 460 84.8
AL1G18980 Arabidopsis lyrata HOM05D006573 ORTHO05D008073 9.0e-214 746.9 460 82.8
CARHR008450 Cardamine hirsuta HOM05D006573 ORTHO05D008073 3.2e-211 738.4 468 81.6
AT1G08550 Arabidopsis thaliana HOM05D006573 ORTHO05D008073 3.3e-208 728.4 463 81.2
Carub.0001s0791 Capsella rubella HOM05D006573 ORTHO05D008073 2.8e-207 725.3 462 81.4
Aa31sc20G120 Aethionema arabicum HOM05D006573 ORTHO05D008073 1.4e-198 696.4 464 76.5
THA.LOC104805797 Tarenaya hassleriana HOM05D006573 ORTHO05D008073 5.9e-189 664.5 463 73.2
TAR362G0441 Trochodendron aralioides HOM05D006573 ORTHO05D008073 3.0e-169 599.0 427 71.9
Eucgr.B02180 Eucalyptus grandis HOM05D006573 ORTHO05D008073 1.5e-168 596.7 398 74.9
Thecc.05G259800 Theobroma cacao HOM05D006573 ORTHO05D008073 2.0e-168 596.3 388 74.5
Cpa.g.sc51.78 Carica papaya HOM05D006573 ORTHO05D008073 4.4e-168 595.1 409 74.8
GSVIVG01026405001 Vitis vinifera HOM05D006573 ORTHO05D008073 9.7e-168 594.0 389 74.6
Potri.013G053100 Populus trichocarpa HOM05D006573 ORTHO05D008073 8.2e-167 590.9 409 73.3
CANSAT21G0678 Cannabis sativa HOM05D006573 ORTHO05D008073 1.1e-166 590.5 474 64.1
Manes.09G144600 Manihot esculenta HOM05D006573 ORTHO05D008073 1.4e-166 590.1 392 74.0
Duzib177G1122 Durio zibethinus HOM05D006573 ORTHO05D008073 9.1e-166 587.4 382 74.6
Actinidia06814 Actinidia chinensis HOM05D006573 ORTHO05D008073 1.6e-165 586.6 404 72.5
CSS0006565 Camellia sinensis var. sinensis HOM05D006573 ORTHO05D008073 2.6e-165 585.9 391 73.9
Nn1g07946 Nelumbo nucifera HOM05D006573 ORTHO05D008073 4.5e-165 585.1 379 76.0
Prupe.6G356100 Prunus persica HOM05D006573 ORTHO05D008073 7.7e-165 584.3 415 69.2
Sabra13G0048100 Salix brachista HOM05D006573 ORTHO05D008073 7.7e-165 584.3 423 70.7
Gohir.D11G250400 Gossypium hirsutum HOM05D006573 ORTHO05D008073 7.2e-163 577.8 405 71.9
Gorai.007G268500 Gossypium raimondii HOM05D006573 ORTHO05D008073 7.2e-163 577.8 405 71.9
Hma1.2p1_0123F.1_g058030 Hydrangea macrophylla HOM05D006573 ORTHO05D008073 9.4e-163 577.4 444 65.5
FAN05G2122 Fragaria x ananassa HOM05D006573 ORTHO05D008073 2.1e-162 576.2 392 70.7
FAN05G3303 Fragaria x ananassa HOM05D006573 ORTHO05D008073 2.1e-162 576.2 392 70.7
MD12G1255200 Malus domestica HOM05D006573 ORTHO05D008073 4.7e-162 575.1 414 68.8
Cc09_g03200 Coffea canephora HOM05D006573 ORTHO05D008073 1.0e-161 573.9 367 76.6
Dinv19279 Davidia involucrata HOM05D006573 ORTHO05D008073 1.4e-161 573.5 411 69.8
RcHm_v2.0_Chr3g0448661 Rosa chinensis HOM05D006573 ORTHO05D008073 1.8e-161 573.2 392 70.7
Ca_09476_v3 Cicer arietinum L. HOM05D006573 ORTHO05D008073 4.0e-161 572.0 377 75.9
Medtr7g116630 Medicago truncatula HOM05D006573 ORTHO05D008073 5.2e-161 571.6 377 72.4
Glyma.03G253500 Glycine max HOM05D006573 ORTHO05D008073 6.7e-161 571.2 377 74.0
Haze_04495 Corylus avellana HOM05D006573 ORTHO05D008073 3.3e-160 568.9 368 73.9
Glyma.19G251000 Glycine max HOM05D006573 ORTHO05D008073 3.3e-160 568.9 377 73.7
AUR62005294 Chenopodium quinoa HOM05D006573 ORTHO05D008073 9.7e-160 567.4 457 65.2
TPR.G4727 Trifolium pratense HOM05D006573 ORTHO05D008073 1.3e-159 567.0 378 73.3
MBI11_g07442_MAGBIO Magnolia biondii HOM05D006573 ORTHO05D008073 1.7e-159 566.6 398 71.1
VMungo0540G0667 Vigna mungo HOM05D006573 ORTHO05D008073 2.8e-159 565.8 369 75.6
PSO017G7064 Papaver somniferum HOM05D006573 ORTHO05D008073 3.7e-159 565.5 376 75.0
PSO063G7541 Papaver somniferum HOM05D006573 ORTHO05D008073 1.4e-158 563.5 387 72.9
FAN14G5930 Fragaria x ananassa HOM05D006573 ORTHO05D008073 1.8e-158 563.1 400 69.0
Lj1g0015745 Lotus japonicus HOM05D006573 ORTHO05D008073 5.3e-158 561.6 389 70.4
FvH4_6g01130 Fragaria vesca HOM05D006573 ORTHO05D008073 9.1e-158 560.8 400 68.5
Sc09g0001730 Simmondsia chinensis HOM05D006573 ORTHO05D008073 1.6e-157 560.1 432 67.6
Phvul.006G108200 Phaseolus vulgaris HOM05D006573 ORTHO05D008073 2.0e-157 559.7 369 75.6
Ciclev10019925m.g Citrus clementina HOM05D006573 ORTHO05D008073 2.7e-157 559.3 379 70.7
AUR62000660 Chenopodium quinoa HOM05D006573 ORTHO05D008073 3.5e-157 558.9 433 67.0
SGA_v2.0_scaffold13G06342 Striga asiatica HOM05D006573 ORTHO05D008073 5.9e-157 558.1 363 74.4
FAN09G4254 Fragaria x ananassa HOM05D006573 ORTHO05D008073 7.7e-157 557.8 400 68.0
arahy.Tifrunner.gnm1.ann1.ZGZX3T Arachis hypogaea HOM05D006573 ORTHO05D008073 5.0e-156 555.1 368 73.4
arahy.Tifrunner.gnm1.ann1.L0KK3Q Arachis hypogaea HOM05D006573 ORTHO05D008073 1.9e-155 553.1 368 73.1
MSTRG.8177 Avicennia marina HOM05D006573 ORTHO05D008073 2.5e-155 552.7 363 77.1
Atru.chr2.1254 Acer truncatum HOM05D006573 ORTHO05D008073 3.2e-155 552.4 392 69.6
Migut.F02066 Erythranthe guttata HOM05D006573 ORTHO05D008073 4.2e-155 552.0 363 73.6
Lalb_Chr18g0044221 Lupinus albus HOM05D006573 ORTHO05D008073 7.2e-155 551.2 389 69.7
CDE05G0683 Ceratophyllum demersum HOM05D006573 ORTHO05D008073 9.4e-155 550.8 369 74.3
ATR0069G016 Amborella trichopoda HOM05D006573 ORTHO05D008073 1.6e-154 550.1 364 74.2
Nitab4.5_0012098g0010 Nicotiana tabacum HOM05D006573 ORTHO05D008073 4.7e-154 548.5 364 74.5
HPP92_020222 Vanilla planifolia HOM05D001545 ORTHO05D001600 6.1e-154 548.1 376 71.3
Aqoxy2G03898 Aquilegia oxysepala HOM05D006573 ORTHO05D008073 1.0e-153 547.4 364 75.0
Nitab4.5_0000344g0030 Nicotiana tabacum HOM05D006573 ORTHO05D008073 2.3e-153 546.2 364 73.9
Solyc04g050930.3 Solanum lycopersicum HOM05D006573 ORTHO05D008073 4.0e-153 545.4 369 73.7
Sopen04g022050 Solanum pennellii HOM05D006573 ORTHO05D008073 5.2e-153 545.0 369 73.7
HanXRQChr13g0406621 Helianthus annuus HOM05D006573 ORTHO05D008073 6.8e-153 544.7 408 68.1
EL10Ac4g09803 Beta vulgaris HOM05D006573 ORTHO05D008073 1.2e-152 543.9 406 69.0
PGSC0003DMG400010688 Solanum tuberosum HOM05D006573 ORTHO05D008073 2.0e-152 543.1 369 72.4
TWI34G1215 Tripterygium wilfordii HOM05D006573 ORTHO05D008073 2.0e-152 543.1 389 71.7
CAN.G29.20 Capsicum annuum HOM05D006573 ORTHO05D008073 5.7e-152 541.6 369 71.5
Zm00001eb085840 Zea mays HOM05D006573 ORTHO05D008073 7.5e-152 541.2 379 72.3
ECA248G2645 Erigeron canadensis HOM05D006573 ORTHO05D008073 9.8e-152 540.8 378 72.5
Gohir.A11G241000 Gossypium hirsutum HOM05D006573 ORTHO05D008073 1.3e-151 540.4 405 68.1
CSS0039030 Camellia sinensis var. sinensis HOM05D006573 ORTHO05D008073 2.4e-150 536.2 391 68.5
Lj2A407T38 Lonicera japonica HOM05D006573 ORTHO05D008073 4.5e-149 531.9 372 71.8
CiPaw.07G075700 Carya illinoinensis HOM05D006573 ORTHO05D008073 1.9e-147 526.6 378 69.0
Psat3g005000 Pisum sativum HOM05D006573 ORTHO05D008073 4.2e-147 525.4 369 71.5
Oeu054601.1 Olea europaea HOM05D006573 ORTHO05D008073 5.5e-147 525.0 400 68.8
Peaxi162Scf01011g00215 Petunia axillaris HOM05D006573 ORTHO05D008073 1.6e-146 523.5 357 72.8
Lsat_1_v5_gn_7_62281 Lactuca sativa HOM05D006573 ORTHO05D008073 2.0e-144 516.5 368 70.4
DCAR_013654 Daucus carota HOM05D006573 ORTHO05D008073 2.2e-143 513.1 426 62.9
Ah.06g188810 Amaranthus hybridus HOM05D006573 ORTHO05D008073 1.6e-141 506.9 369 72.4
Lj2A405T39 Lonicera japonica HOM05D006573 ORTHO05D008073 2.0e-141 506.5 363 67.5
Hund07152 Selenicereus undatus HOM05D006573 ORTHO05D008073 2.8e-138 496.1 368 70.1
CsaV3_2G010250 Cucumis sativus L. HOM05D006573 ORTHO05D008073 1.7e-135 486.9 315 73.0
MELO3C008677.2 Cucumis melo HOM05D006573 ORTHO05D008073 2.4e-134 483.0 395 63.8
vmacro12852 Vaccinium macrocarpon HOM05D006573 ORTHO05D008073 2.4e-134 483.0 458 55.9
ClCG11G010060 Citrullus lanatus HOM05D006573 ORTHO05D008073 4.1e-134 482.3 314 72.6
Rhsim10G0138000 Rhododendron simsii HOM05D006573 ORTHO05D008073 1.0e-132 477.6 388 63.9
SalBow1G0293 Salvia bowleyana HOM05D006573 ORTHO05D008073 1.0e-132 477.6 363 68.9
SEGI_03231 Sequoiadendron giganteum HOM05D006573 ORTHO05D008073 1.7e-132 476.9 352 65.9
SalBow1G2715 Salvia bowleyana HOM05D006573 ORTHO05D008073 3.9e-132 475.7 363 68.6
Sed0012720 Sechium edule HOM05D006573 ORTHO05D008073 1.5e-131 473.8 401 62.1
Mapoly0111s0023 Marchantia polymorpha HOM05D006573 ORTHO05D008073 1.8e-129 466.8 370 62.7
COL.COLO4_20557 Corchorus olitorius HOM05D006573 ORTHO05D008073 7.0e-126 454.9 286 75.5
AagrBONN_evm.TU.Sc2ySwM_228.1660 Anthoceros agrestis HOM05D006573 ORTHO05D008073 2.5e-123 446.4 399 58.9
SMO270G0104 Selaginella moellendorffii HOM05D006573 ORTHO05D008073 3.9e-116 422.5 339 60.8
Pp3c3_13220 Physcomitrium patens HOM05D006573 ORTHO05D008073 3.1e-113 412.9 410 52.9
CBR_g38554 Chara braunii HOM05D006573 ORTHO05D008073 1.5e-112 410.6 357 55.5
CDE05G0621 Ceratophyllum demersum HOM05D006573 ORTHO05D008073 2.3e-100 370.2 244 72.5
SEGI_19143 Sequoiadendron giganteum HOM05D006573 ORTHO05D008073 1.5e-99 367.5 280 60.0
Os04g0379700 Oryza sativa ssp. japonica HOM05D006573 ORTHO05D008073 1.5e-91 340.9 244 67.2
Hma1.2p1_0123F.1_g058020 Hydrangea macrophylla HOM05D006573 ORTHO05D008073 1.6e-85 320.9 271 59.8
Lj2C408T2 Lonicera japonica HOM05D006573 ORTHO05D008073 1.1e-83 314.7 364 51.1
unitig_46.g17980 Utricularia gibba HOM05D006573 ORTHO05D008073 2.0e-80 303.9 237 65.0
PGSC0003DMG400010690 Solanum tuberosum HOM05D006573 ORTHO05D008073 3.9e-68 263.1 231 56.7
MCO16G084 Micromonas commoda HOM05D006573 ORTHO05D008073 2.2e-63 247.3 287 43.6
PRCOL_00001224 Prasinoderma coloniale HOM05D006573 ORTHO05D008073 2.9e-63 246.9 337 41.2
SMO297G0027 Selaginella moellendorffii HOM05D006573 ORTHO05D008073 1.3e-58 231.5 204 51.5
SMO334G0031 Selaginella moellendorffii HOM05D006573 ORTHO05D008073 1.3e-58 231.5 204 51.5
SMO297G0014 Selaginella moellendorffii HOM05D006573 ORTHO05D008073 1.1e-57 228.4 204 51.0
SMO270G0143 Selaginella moellendorffii HOM05D006573 ORTHO05D008073 5.3e-57 226.1 204 50.5
PGSC0003DMG400020993 Solanum tuberosum HOM05D006573 ORTHO05D008073 4.2e-54 216.5 196 55.6
unitig_46.g17981 Utricularia gibba HOM05D006573 ORTHO05D008073 1.0e-39 168.7 141 66.7
SMO266G0012 Selaginella moellendorffii HOM05D006573 ORTHO05D008073 2.9e-23 114.0 98 53.1
Haze_04503 Corylus avellana HOM05D006573 ORTHO05D008073 5.4e-17 93.2 93 58.1
Haze_04505 Corylus avellana HOM05D006573 ORTHO05D008073 4.7e-13 80.1 93 53.8
Nn5g28853 Nelumbo nucifera HOM05D006367 ORTHO05D007942 2.2e-10 71.2 269 23.4
CDE04G0187 Ceratophyllum demersum HOM05D006367 ORTHO05D007942 9.2e-09 65.9 273 23.1
Migut.H02447 Erythranthe guttata HOM05D006367 ORTHO05D007942 1.2e-08 65.5 142 23.2
ATR1120G154 Amborella trichopoda HOM05D006367 ORTHO05D007942 2.1e-08 64.7 143 25.2
THA.LOC104807726 Tarenaya hassleriana HOM05D006367 ORTHO05D007942 2.1e-08 64.7 269 22.7
Pp3c8_810 Physcomitrium patens HOM05D006367 ORTHO05D007942 1.0e-07 62.4 281 23.1
Lj4P863T60 Lonicera japonica HOM05D006367 ORTHO05D007942 1.7e-07 61.6 140 23.6
QL93p0249_0008 Quercus lobata HOM05D006573 ORTHO05D008073 3.0e-07 60.8 61 50.8
AagrBONN_evm.TU.Sc2ySwM_344.2769 Anthoceros agrestis HOM05D006367 ORTHO05D007942 5.1e-07 60.1 279 20.4
CBR_g8843 Chara braunii HOM05D006367 ORTHO05D007942 1.5e-06 58.5 129 20.9


User provided reference genes

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