Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB07g34085 Brassica carinata HOM05D002184 ORTHO05D002379 6.7e-34 146.7 72 100.0
C05p06510 Brassica napus HOM05D002184 ORTHO05D002379 6.7e-34 146.7 72 100.0
A06p05390 Brassica napus HOM05D002184 ORTHO05D002379 7.4e-33 143.3 72 97.2
BraA06t23748Z Brassica rapa HOM05D002184 ORTHO05D002379 7.4e-33 143.3 72 97.2
Sp1g07010 Schrenkiella parvula HOM05D002184 ORTHO05D002379 2.5e-28 128.3 68 92.6
Thhalv10007986m.g Eutrema salsugineum HOM05D002184 ORTHO05D002379 4.6e-27 124.0 68 91.2
C08p03610 Brassica napus HOM05D002184 ORTHO05D002379 1.9e-25 118.6 67 85.1
BolC8t47164H Brassica oleracea HOM05D002184 ORTHO05D002379 4.3e-25 117.5 65 86.2
CARHR008250 Cardamine hirsuta HOM05D002184 ORTHO05D002379 1.3e-24 115.9 68 83.8
BcaC07g42531 Brassica carinata HOM05D002184 ORTHO05D002379 2.8e-24 114.8 68 85.3
AL1G18780 Arabidopsis lyrata HOM05D002184 ORTHO05D002379 6.2e-24 113.6 68 82.4
Carub.0001s0772 Capsella rubella HOM05D002184 ORTHO05D002379 1.8e-23 112.1 66 83.3
AT1G08370 Arabidopsis thaliana HOM05D002184 ORTHO05D002379 1.5e-22 109.0 66 80.3
A08p35250 Brassica napus HOM05D000444 ORTHO05D002379 2.2e-21 105.1 65 83.1
BraA08t35433Z Brassica rapa HOM05D002184 ORTHO05D002379 2.2e-21 105.1 65 83.1
BcaC07g41947 Brassica carinata HOM05D002184 ORTHO05D002379 6.5e-21 103.6 66 78.8
C08p50040 Brassica napus HOM05D002184 ORTHO05D002379 6.5e-21 103.6 66 78.8
BcaB03g13341 Brassica carinata HOM05D002184 ORTHO05D002379 7.1e-20 100.1 63 81.0
A09p65940 Brassica napus HOM05D002184 ORTHO05D002379 1.2e-19 99.4 66 75.8
BraA09t41938Z Brassica rapa HOM05D002184 ORTHO05D002379 1.2e-19 99.4 66 75.8
Thecc.05G095800 Theobroma cacao HOM05D002184 ORTHO05D002379 2.3e-18 95.1 78 62.8
Duzib093G0468 Durio zibethinus HOM05D002184 ORTHO05D002379 1.5e-17 92.4 77 62.3
TAR623G0386 Trochodendron aralioides HOM05D002184 ORTHO05D002379 1.5e-17 92.4 74 66.2
Cfa009989 Carpinus fangiana HOM05D002184 ORTHO05D002379 7.4e-17 90.1 74 63.5
COL.COLO4_29668 Corchorus olitorius HOM05D002184 ORTHO05D002379 3.7e-16 87.8 65 63.1
Duzib106G1427 Durio zibethinus HOM05D002184 ORTHO05D002379 4.8e-16 87.4 77 59.7
Gohir.A09G141400 Gossypium hirsutum HOM05D002184 ORTHO05D002379 6.3e-16 87.0 77 59.7
Gohir.D09G133300 Gossypium hirsutum HOM05D002184 ORTHO05D002379 6.3e-16 87.0 77 59.7
Gorai.006G152800 Gossypium raimondii HOM05D002184 ORTHO05D002379 6.3e-16 87.0 77 59.7
SGA_v2.0_scaffold100G29605 Striga asiatica HOM05D002184 ORTHO05D002379 6.3e-16 87.0 83 55.4
Glyma.13G314900 Glycine max HOM05D002184 ORTHO05D002379 8.2e-16 86.7 76 60.5
Gohir.A11G318500 Gossypium hirsutum HOM05D002184 ORTHO05D002379 2.4e-15 85.1 77 58.4
Gohir.D11G337700 Gossypium hirsutum HOM05D002184 ORTHO05D002379 2.4e-15 85.1 77 58.4
Gorai.007G367700 Gossypium raimondii HOM05D002184 ORTHO05D002379 2.4e-15 85.1 77 58.4
unitig_699.g19177 Utricularia gibba HOM05D002184 ORTHO05D002379 3.1e-15 84.7 71 57.7
QL07p038117 Quercus lobata HOM05D002184 ORTHO05D002379 4.1e-15 84.3 79 57.0
CiPaw.10G012600 Carya illinoinensis HOM05D002184 ORTHO05D002379 5.3e-15 84.0 67 61.2
GSVIVG01033895001 Vitis vinifera HOM05D002184 ORTHO05D002379 9.0e-15 83.2 61 68.9
Aa31sc375G10 Aethionema arabicum HOM05D002184 ORTHO05D002379 1.5e-14 82.4 76 59.2
Os12g0156400 Oryza sativa ssp. japonica HOM05D002184 ORTHO05D002379 3.4e-14 81.3 78 57.7
Migut.D02429 Erythranthe guttata HOM05D002184 ORTHO05D002379 4.5e-14 80.9 74 56.8
CSS0017670 Camellia sinensis var. sinensis HOM05D002184 ORTHO05D002379 1.0e-13 79.7 63 61.9
TAR369G0493 Trochodendron aralioides HOM05D002184 ORTHO05D002379 1.0e-13 79.7 67 65.7
arahy.Tifrunner.gnm1.ann1.II55D9 Arachis hypogaea HOM05D002184 ORTHO05D002379 1.7e-13 79.0 74 58.1
arahy.Tifrunner.gnm1.ann1.UI7WMA Arachis hypogaea HOM05D002184 ORTHO05D002379 1.7e-13 79.0 74 58.1
AUR62006241 Chenopodium quinoa HOM05D002184 ORTHO05D002379 3.8e-13 77.8 66 57.6
AUR62028476 Chenopodium quinoa HOM05D002184 ORTHO05D002379 3.8e-13 77.8 69 56.5
TWI74G1108 Tripterygium wilfordii HOM05D002184 ORTHO05D002379 3.8e-13 77.8 66 59.1
Lalb_Chr20g0111571 Lupinus albus HOM05D002184 ORTHO05D002379 5.0e-13 77.4 65 61.5
MD03G1149600 Malus domestica HOM05D002184 ORTHO05D002379 5.0e-13 77.4 68 60.3
HPP92_005469 Vanilla planifolia HOM05D002184 ORTHO05D002379 5.0e-13 77.4 61 63.9
EL10Ac7g16849 Beta vulgaris HOM05D002184 ORTHO05D002379 6.5e-13 77.0 66 60.6
Lj2C143T8 Lonicera japonica HOM05D002184 ORTHO05D002379 6.5e-13 77.0 67 64.2
Zm00001eb406930 Zea mays HOM05D002184 ORTHO05D002379 6.5e-13 77.0 69 59.4
CAN.G226.2 Capsicum annuum HOM05D002184 ORTHO05D002379 8.5e-13 76.6 73 56.2
FAN21G1767 Fragaria x ananassa HOM05D002184 ORTHO05D002379 8.5e-13 76.6 69 56.5
MSTRG.18769 Avicennia marina HOM05D002184 ORTHO05D002379 1.4e-12 75.9 67 58.2
FvH4_3g25640 Fragaria vesca HOM05D002184 ORTHO05D002379 1.4e-12 75.9 69 55.1
Sc20g0006450 Simmondsia chinensis HOM05D002184 ORTHO05D002379 1.9e-12 75.5 66 60.6
TWI77G0830 Tripterygium wilfordii HOM05D002184 ORTHO05D002379 1.9e-12 75.5 78 51.3
Cc06_g06200 Coffea canephora HOM05D002184 ORTHO05D002379 2.5e-12 75.1 66 62.1
TWI75G0010 Tripterygium wilfordii HOM05D002184 ORTHO05D002379 2.5e-12 75.1 74 54.1
Zm00001eb197150 Zea mays HOM05D002184 ORTHO05D002379 2.5e-12 75.1 66 59.1
CANSAT64G0756 Cannabis sativa HOM05D002184 ORTHO05D002379 3.2e-12 74.7 80 55.0
THA.LOC104800517 Tarenaya hassleriana HOM05D002184 ORTHO05D002379 3.2e-12 74.7 62 61.3
Phvul.001G192600 Phaseolus vulgaris HOM05D002184 ORTHO05D002379 4.2e-12 74.3 59 64.4
TPR.G23343 Trifolium pratense HOM05D002184 ORTHO05D002379 4.2e-12 74.3 75 53.3
VMungo1383G1807 Vigna mungo HOM05D002184 ORTHO05D002379 4.2e-12 74.3 65 58.5
RcHm_v2.0_Chr5g0045761 Rosa chinensis HOM05D002184 ORTHO05D002379 5.5e-12 73.9 69 56.5
RcHm_v2.0_Chr5g0045791 Rosa chinensis HOM05D002184 ORTHO05D002379 5.5e-12 73.9 69 55.1
Cpa.g.sc104.90 Carica papaya HOM05D002184 ORTHO05D002379 7.2e-12 73.6 65 53.8
Manes.11G164100 Manihot esculenta HOM05D002184 ORTHO05D002379 7.2e-12 73.6 74 54.1
Prupe.7G101100 Prunus persica HOM05D002184 ORTHO05D002379 7.2e-12 73.6 79 51.9
CDE08G0722 Ceratophyllum demersum HOM05D002184 ORTHO05D002379 9.4e-12 73.2 61 57.4
PSO801G0363 Papaver somniferum HOM05D002184 ORTHO05D002379 9.4e-12 73.2 65 58.5
Dinv22820 Davidia involucrata HOM05D002184 ORTHO05D002379 1.2e-11 72.8 78 55.1
FAN16G1226 Fragaria x ananassa HOM05D002184 ORTHO05D002379 1.2e-11 72.8 76 50.0
Glyma.03G198400 Glycine max HOM05D002184 ORTHO05D002379 1.2e-11 72.8 59 64.4
Aqoxy4G02720 Aquilegia oxysepala HOM05D002184 ORTHO05D002379 1.6e-11 72.4 53 66.0
CSS0010666 Camellia sinensis var. sinensis HOM05D002184 ORTHO05D002379 1.6e-11 72.4 65 56.9
AUR62001525 Chenopodium quinoa HOM05D002184 ORTHO05D002379 1.6e-11 72.4 73 52.1
Sabra16G0077700 Salix brachista HOM05D002184 ORTHO05D002379 1.6e-11 72.4 65 56.9
unitig_899.g14957 Utricularia gibba HOM05D004616 ORTHO05D005860 1.6e-11 72.4 74 56.8
DCAR_013415 Daucus carota HOM05D002184 ORTHO05D002379 2.1e-11 72.0 66 57.6
ECA238G2695 Erigeron canadensis HOM05D002184 ORTHO05D002379 2.1e-11 72.0 65 55.4
FAN11G0936 Fragaria x ananassa HOM05D002184 ORTHO05D002379 2.1e-11 72.0 76 48.7
Glyma.19G196300 Glycine max HOM05D002184 ORTHO05D002379 2.1e-11 72.0 59 62.7
QL01p011868 Quercus lobata HOM05D002184 ORTHO05D002379 2.1e-11 72.0 75 54.7
Rhsim01G0203900 Rhododendron simsii HOM05D002184 ORTHO05D002379 2.1e-11 72.0 85 50.6
PSO339G5971 Papaver somniferum HOM05D002184 ORTHO05D002379 2.7e-11 71.6 65 56.9
Sabra16G0080600 Salix brachista HOM05D002184 ORTHO05D002379 2.7e-11 71.6 65 56.9
COL.COLO4_34008 Corchorus olitorius HOM05D002184 ORTHO05D002379 3.6e-11 71.2 65 58.5
Glyma.12G186600 Glycine max HOM05D002184 ORTHO05D002379 3.6e-11 71.2 74 54.1
Psat5g257840 Pisum sativum HOM05D002184 ORTHO05D002379 4.6e-11 70.9 79 53.2
Thecc.09G279100 Theobroma cacao HOM05D002184 ORTHO05D002379 4.6e-11 70.9 66 56.1
CSS0012979 Camellia sinensis var. sinensis HOM05D002184 ORTHO05D002379 6.1e-11 70.5 65 56.9
Ca_09026_v3 Cicer arietinum L. HOM05D002184 ORTHO05D002379 6.1e-11 70.5 75 52.0
Peaxi162Scf00091g00717 Petunia axillaris HOM05D002184 ORTHO05D002379 6.1e-11 70.5 66 56.1
Manes.09G051800 Manihot esculenta HOM05D002184 ORTHO05D002379 7.9e-11 70.1 74 54.1
HanXRQChr09g0238361 Helianthus annuus HOM05D002184 ORTHO05D002379 1.0e-10 69.7 65 56.9
Nitab4.5_0000937g0100 Nicotiana tabacum HOM05D002184 ORTHO05D002379 1.0e-10 69.7 65 58.5
Zm00001eb092570 Zea mays HOM05D002184 ORTHO05D002379 1.0e-10 69.7 68 52.9
VMungo1080G0599 Vigna mungo HOM05D002184 ORTHO05D002379 1.4e-10 69.3 72 54.2
Lj3g0016489 Lotus japonicus HOM05D002184 ORTHO05D002379 1.8e-10 68.9 76 53.9
Prupe.6G135600 Prunus persica HOM05D002184 ORTHO05D002379 1.8e-10 68.9 69 58.0
Lalb_Chr24g0393501 Lupinus albus HOM05D002184 ORTHO05D002379 2.3e-10 68.6 72 52.8
Medtr2g086970 Medicago truncatula HOM05D002184 ORTHO05D002379 2.3e-10 68.6 77 51.9
PGR102G2768 Punica granatum HOM05D002184 ORTHO05D002379 2.3e-10 68.6 79 51.9
Cc01_g08840 Coffea canephora HOM05D002184 ORTHO05D002379 3.9e-10 67.8 78 51.3
Potri.009G160200 Populus trichocarpa HOM05D002184 ORTHO05D002379 3.9e-10 67.8 74 51.4
Cpa.g.sc195.21 Carica papaya HOM05D002184 ORTHO05D002379 5.1e-10 67.4 75 50.7
Dinv08936 Davidia involucrata HOM05D002184 ORTHO05D002379 5.1e-10 67.4 79 53.2
Eucgr.B03826 Eucalyptus grandis HOM05D002184 ORTHO05D002379 5.1e-10 67.4 78 52.6
Phvul.005G122100 Phaseolus vulgaris HOM05D002184 ORTHO05D002379 5.1e-10 67.4 72 54.2
Sopen01g004900 Solanum pennellii HOM05D002184 ORTHO05D002379 5.1e-10 67.4 78 51.3
PGSC0003DMG400014735 Solanum tuberosum HOM05D002184 ORTHO05D002379 5.1e-10 67.4 78 51.3
SGA_v2.0_scaffold22G09839 Striga asiatica HOM05D002184 ORTHO05D002379 6.7e-10 67.0 66 56.1
unitig_27.g25033 Utricularia gibba HOM05D002184 ORTHO05D002379 8.8e-10 66.6 72 50.0
CDE06G0357 Ceratophyllum demersum HOM05D002184 ORTHO05D002379 1.1e-09 66.2 69 47.8
Lj1g0004636 Lotus japonicus HOM05D002184 ORTHO05D002379 1.1e-09 66.2 57 59.6
Psat0s2532g0040 Pisum sativum HOM05D002184 ORTHO05D002379 1.1e-09 66.2 69 55.1
RcHm_v2.0_Chr3g0474851 Rosa chinensis HOM05D002184 ORTHO05D002379 1.1e-09 66.2 78 51.3
Solyc01g009390.4 Solanum lycopersicum HOM05D002184 ORTHO05D002379 1.1e-09 66.2 78 51.3
Actinidia05399 Actinidia chinensis HOM05D002184 ORTHO05D002379 1.5e-09 65.9 73 52.1
CiPaw.13G133100 Carya illinoinensis HOM05D002184 ORTHO05D002379 1.5e-09 65.9 74 51.4
CsaV3_6G040870 Cucumis sativus L. HOM05D002184 ORTHO05D002379 1.5e-09 65.9 75 50.7
Nitab4.5_0000573g0090 Nicotiana tabacum HOM05D002184 ORTHO05D002379 1.5e-09 65.9 65 53.8
TPR.G36067 Trifolium pratense HOM05D002184 ORTHO05D002379 1.5e-09 65.9 79 50.6
CAN.G919.40 Capsicum annuum HOM05D002184 ORTHO05D002379 2.0e-09 65.5 65 52.3
CiPaw.09G017500 Carya illinoinensis HOM05D002184 ORTHO05D002379 2.0e-09 65.5 80 46.2
Hma1.2p1_0587F.1_g183980 Hydrangea macrophylla HOM05D002184 ORTHO05D002379 2.0e-09 65.5 66 54.5
Ah.08g210370 Amaranthus hybridus HOM05D002184 ORTHO05D002379 2.5e-09 65.1 62 53.2
Gorai.004G011200 Gossypium raimondii HOM05D002184 ORTHO05D002379 2.5e-09 65.1 65 52.3
MD12G1031300 Malus domestica HOM05D002184 ORTHO05D002379 2.5e-09 65.1 83 45.8
Potri.006G208600 Populus trichocarpa HOM05D002184 ORTHO05D002379 2.5e-09 65.1 65 52.3
SEGI_02190 Sequoiadendron giganteum HOM05D002184 ORTHO05D002379 2.5e-09 65.1 71 46.5
Ciclev10028751m.g Citrus clementina HOM05D002184 ORTHO05D002379 3.3e-09 64.7 63 55.6
Eucgr.A02630 Eucalyptus grandis HOM05D002184 ORTHO05D002379 3.3e-09 64.7 60 51.7
MD14G1031700 Malus domestica HOM05D002184 ORTHO05D002379 3.3e-09 64.7 70 51.4
Pp3c27_1630 Physcomitrium patens HOM05D002184 ORTHO05D002379 3.3e-09 64.7 66 53.0
FvH4_6g19510 Fragaria vesca HOM05D002184 ORTHO05D002379 4.3e-09 64.3 78 48.7
Gohir.D08G016900 Gossypium hirsutum HOM05D002184 ORTHO05D002379 4.3e-09 64.3 65 52.3
MD11G1168500 Malus domestica HOM05D002184 ORTHO05D002379 4.3e-09 64.3 64 57.8
Sopen06g030630 Solanum pennellii HOM05D002184 ORTHO05D002379 4.3e-09 64.3 65 53.8
Solyc06g074210.3 Solanum lycopersicum HOM05D002184 ORTHO05D002379 5.7e-09 63.9 65 52.3
Haze_23349 Corylus avellana HOM05D002184 ORTHO05D002379 7.4e-09 63.5 57 59.6
Duzib170G0847 Durio zibethinus HOM05D002184 ORTHO05D002379 7.4e-09 63.5 66 51.5
Manes.08G028800 Manihot esculenta HOM05D002184 ORTHO05D002379 7.4e-09 63.5 75 48.0
ClCG04G010230 Citrullus lanatus HOM05D002184 ORTHO05D002379 9.7e-09 63.2 75 52.0
Sabra06G0160500 Salix brachista HOM05D002184 ORTHO05D002379 2.2e-08 62.0 63 55.6
FAN02G3259 Fragaria x ananassa HOM05D002184 ORTHO05D002379 2.8e-08 61.6 74 50.0
Sed0001825 Sechium edule HOM05D002184 ORTHO05D002379 2.8e-08 61.6 65 53.8
Hund03906 Selenicereus undatus HOM05D002184 ORTHO05D002379 2.8e-08 61.6 49 63.3
Gohir.A08G006700 Gossypium hirsutum HOM05D002184 ORTHO05D002379 4.8e-08 60.8 65 50.8
Lsat_1_v5_gn_1_59961 Lactuca sativa HOM05D002184 ORTHO05D002379 4.8e-08 60.8 68 48.5
PGR004G1309 Punica granatum HOM05D002184 ORTHO05D002379 4.8e-08 60.8 69 49.3
MSTRG.17699 Avicennia marina HOM05D002184 ORTHO05D002379 6.3e-08 60.5 75 46.7
Dinv21164 Davidia involucrata HOM05D002184 ORTHO05D002379 6.3e-08 60.5 66 53.0
Nn7g38235 Nelumbo nucifera HOM05D002184 ORTHO05D002379 6.3e-08 60.5 78 48.7
vmacro07434 Vaccinium macrocarpon HOM05D002184 ORTHO05D002379 6.3e-08 60.5 67 52.2
FAN09G2188 Fragaria x ananassa HOM05D002184 ORTHO05D002379 8.2e-08 60.1 78 46.2
Aqoxy2G01053 Aquilegia oxysepala HOM05D002184 ORTHO05D002379 1.1e-07 59.7 63 49.2
Haze_19655 Corylus avellana HOM05D002184 ORTHO05D002379 1.1e-07 59.7 75 46.7
Pp3c6_17640 Physcomitrium patens HOM05D002184 ORTHO05D002379 1.8e-07 58.9 70 50.0
PGSC0003DMG400005889 Solanum tuberosum HOM05D002184 ORTHO05D002379 1.8e-07 58.9 65 50.8
Nitab4.5_0005472g0070 Nicotiana tabacum HOM05D002184 ORTHO05D002379 2.4e-07 58.5 56 55.4
AUR62020258 Chenopodium quinoa HOM05D002184 ORTHO05D002379 4.1e-07 57.8 61 54.1
Potri.016G075200 Populus trichocarpa HOM05D002184 ORTHO05D002379 4.1e-07 57.8 62 50.0
Duzib168G1661 Durio zibethinus HOM05D002184 ORTHO05D002379 5.3e-07 57.4 49 61.2
MELO3C024565.2 Cucumis melo HOM05D002184 ORTHO05D002379 6.9e-07 57.0 75 49.3
Lsat_1_v5_gn_6_37161 Lactuca sativa HOM05D002184 ORTHO05D002379 6.9e-07 57.0 65 49.2
MSTRG.21028 Avicennia marina HOM05D002184 ORTHO05D002379 9.1e-07 56.6 66 48.5
Ciclev10012009m.g Citrus clementina HOM05D002184 ORTHO05D002379 1.2e-06 56.2 65 46.2
FAN05G1650 Fragaria x ananassa HOM05D002184 ORTHO05D002379 1.5e-06 55.8 78 46.2
Dinv31723 Davidia involucrata HOM05D002184 ORTHO05D002379 2.0e-06 55.5 65 46.2
Pp3c16_16350 Physcomitrium patens HOM05D002184 ORTHO05D002379 2.0e-06 55.5 58 50.0
Ciclev10030291m.g Citrus clementina HOM05D002184 ORTHO05D002379 2.6e-06 55.1 72 45.8
DCAR_007763 Daucus carota HOM05D002184 ORTHO05D002379 2.6e-06 55.1 57 47.4
HPP92_023019 Vanilla planifolia HOM05D002184 ORTHO05D002379 3.4e-06 54.7 61 50.8
HPP92_023059 Vanilla planifolia HOM05D002184 ORTHO05D002379 3.4e-06 54.7 61 50.8
Actinidia35472 Actinidia chinensis HOM05D002184 ORTHO05D002379 4.5e-06 54.3 73 46.6
EL10Ac7g16330 Beta vulgaris HOM05D002184 ORTHO05D002379 4.5e-06 54.3 45 57.8
Solyc09g010300.3 Solanum lycopersicum HOM05D002184 ORTHO05D002379 4.5e-06 54.3 63 46.0
Sopen09g005000 Solanum pennellii HOM05D002184 ORTHO05D002379 4.5e-06 54.3 63 46.0
Nitab4.5_0003068g0010 Nicotiana tabacum HOM05D002184 ORTHO05D002379 5.9e-06 53.9 62 54.8
GSVIVG01036083001 Vitis vinifera HOM05D002184 ORTHO05D002379 5.9e-06 53.9 65 50.8
Atru.chr3.3171 Acer truncatum HOM05D002184 ORTHO05D002379 7.7e-06 53.5 34 67.6


User provided reference genes

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