Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB07g34024 Brassica carinata HOM05D003469 ORTHO05D004084 0.0e+00 1686.8 903 100.0
BolC5t30309H Brassica oleracea HOM05D003469 ORTHO05D004084 0.0e+00 1500.3 903 86.8
C05p16090 Brassica napus HOM05D003469 ORTHO05D004084 0.0e+00 1500.0 903 86.7
BcaC05g25689 Brassica carinata HOM05D003469 ORTHO05D004084 0.0e+00 1499.6 903 86.3
A06p13570 Brassica napus HOM05D003469 ORTHO05D004084 0.0e+00 1495.3 908 86.7
BraA06t24509Z Brassica rapa HOM05D003469 ORTHO05D004084 0.0e+00 1494.6 908 86.7
BolC4t22588H Brassica oleracea HOM05D003469 ORTHO05D004084 0.0e+00 1455.7 903 85.7
BcaC02g11929 Brassica carinata HOM05D003469 ORTHO05D004084 0.0e+00 1441.8 903 85.0
Thhalv10006758m.g Eutrema salsugineum HOM05D003469 ORTHO05D004084 0.0e+00 1414.4 903 83.3
C04p09790 Brassica napus HOM05D003469 ORTHO05D004084 0.0e+00 1395.2 918 81.4
Carub.0001s1741 Capsella rubella HOM05D003469 ORTHO05D004084 0.0e+00 1385.2 907 82.1
AL1G30030 Arabidopsis lyrata HOM05D003469 ORTHO05D004084 0.0e+00 1374.8 907 81.4
AT1G17680 Arabidopsis thaliana HOM05D003469 ORTHO05D004084 0.0e+00 1360.5 908 80.0
Aa31LG7G2510 Aethionema arabicum HOM05D003469 ORTHO05D004084 0.0e+00 1228.8 836 75.5
THA.LOC104807542 Tarenaya hassleriana HOM05D003469 ORTHO05D004084 2.5e-311 1072.0 913 64.4
THA.LOC104800339 Tarenaya hassleriana HOM05D003469 ORTHO05D004084 6.2e-262 907.9 843 60.0
Sp4g05240 Schrenkiella parvula HOM05D000751 ORTHO05D005618 7.4e-239 831.2 561 76.6
C04p00480 Brassica napus HOM05D003469 ORTHO05D004084 2.6e-236 822.8 761 61.5
Sp1g15780 Schrenkiella parvula HOM05D003469 ORTHO05D004084 3.9e-216 755.7 443 84.7
Thecc.08G168800 Theobroma cacao HOM05D003469 ORTHO05D004084 1.8e-208 730.3 858 47.7
CARHR018280 Cardamine hirsuta HOM05D003469 ORTHO05D004084 3.7e-206 722.6 483 77.0
CiPaw.03G010300 Carya illinoinensis HOM05D003469 ORTHO05D004084 2.6e-204 716.5 855 47.0
TAR628G0771 Trochodendron aralioides HOM05D003469 ORTHO05D004084 1.7e-203 713.8 853 46.3
TWI38G1177 Tripterygium wilfordii HOM05D003469 ORTHO05D004084 3.7e-198 696.0 854 46.7
Phvul.011G031000 Phaseolus vulgaris HOM05D003469 ORTHO05D004084 8.2e-198 694.9 853 45.3
VMungo1127G1455 Vigna mungo HOM05D003469 ORTHO05D004084 9.1e-197 691.4 855 46.3
Lalb_Chr07g0195581 Lupinus albus HOM05D003469 ORTHO05D004084 1.2e-196 691.0 863 45.4
Solyc06g063420.4 Solanum lycopersicum HOM05D003469 ORTHO05D004084 1.2e-196 691.0 858 44.6
GSVIVG01036699001 Vitis vinifera HOM05D003469 ORTHO05D004084 3.8e-195 686.0 909 43.3
Sopen06g022880 Solanum pennellii HOM05D003469 ORTHO05D004084 8.5e-195 684.9 856 44.2
Actinidia21939 Actinidia chinensis HOM05D003469 ORTHO05D004084 4.2e-194 682.6 846 45.5
Glyma.12G027700 Glycine max HOM05D003469 ORTHO05D004084 9.4e-194 681.4 854 45.8
arahy.Tifrunner.gnm1.ann1.M9HC5A Arachis hypogaea HOM05D003469 ORTHO05D004084 4.7e-193 679.1 866 44.0
Glyma.11G102000 Glycine max HOM05D003469 ORTHO05D004084 1.0e-192 677.9 856 44.6
Eucgr.G01221 Eucalyptus grandis HOM05D003469 ORTHO05D004084 5.2e-192 675.6 861 44.9
ClCG07G013810 Citrullus lanatus HOM05D003469 ORTHO05D004084 1.5e-191 674.1 859 43.5
Dinv28114 Davidia involucrata HOM05D003469 ORTHO05D004084 2.8e-190 669.8 857 44.5
CsaV3_3G043790 Cucumis sativus L. HOM05D003469 ORTHO05D004084 2.7e-188 663.3 859 43.3
MELO3C013095.2 Cucumis melo HOM05D003469 ORTHO05D004084 1.7e-187 660.6 859 43.2
PSO170G4646 Papaver somniferum HOM05D003469 ORTHO05D004084 1.7e-187 660.6 860 44.5
Gorai.008G247300 Gossypium raimondii HOM05D003469 ORTHO05D004084 2.9e-187 659.8 859 43.9
arahy.Tifrunner.gnm1.ann1.046I3L Arachis hypogaea HOM05D003469 ORTHO05D004084 1.9e-186 657.1 859 43.3
Sed0013857 Sechium edule HOM05D003469 ORTHO05D004084 3.6e-185 652.9 858 42.7
Nn5g27173 Nelumbo nucifera HOM05D003469 ORTHO05D004084 6.1e-185 652.1 853 43.4
Gohir.A12G230000 Gossypium hirsutum HOM05D003469 ORTHO05D004084 2.3e-184 650.2 859 43.3
Manes.06G016500 Manihot esculenta HOM05D003469 ORTHO05D004084 1.4e-181 641.0 803 45.0
MSTRG.1003 Avicennia marina HOM05D003469 ORTHO05D004084 1.8e-181 640.6 853 42.3
Aqoxy6G00028 Aquilegia oxysepala HOM05D003469 ORTHO05D004084 5.4e-181 639.0 855 42.6
Lj1g0005967 Lotus japonicus HOM05D003469 ORTHO05D004084 5.4e-181 639.0 850 43.4
RcHm_v2.0_Chr2g0151101 Rosa chinensis HOM05D003469 ORTHO05D004084 7.0e-181 638.6 845 44.5
Cc00_g11470 Coffea canephora HOM05D003469 ORTHO05D004084 1.2e-180 637.9 852 42.3
FAN02G0848 Fragaria x ananassa HOM05D003469 ORTHO05D004084 4.5e-180 636.0 855 43.7
FvH4_6g37900 Fragaria vesca HOM05D003469 ORTHO05D004084 7.7e-180 635.2 854 43.1
Gohir.D12G231100 Gossypium hirsutum HOM05D003469 ORTHO05D004084 1.0e-179 634.8 859 43.0
FAN14G5376 Fragaria x ananassa HOM05D003469 ORTHO05D004084 3.8e-179 632.9 854 43.0
Duzib235G0325 Durio zibethinus HOM05D003469 ORTHO05D004084 1.5e-178 630.9 855 43.6
Rhsim12G0000800 Rhododendron simsii HOM05D003469 ORTHO05D004084 3.3e-178 629.8 761 45.2
Atru.chr9.1130 Acer truncatum HOM05D003469 ORTHO05D004084 1.2e-177 627.9 854 42.3
ECA232G2309 Erigeron canadensis HOM05D003469 ORTHO05D004084 1.6e-177 627.5 847 42.1
QL09p054764 Quercus lobata HOM05D003469 ORTHO05D004084 1.6e-177 627.5 772 45.3
FAN09G4617 Fragaria x ananassa HOM05D003469 ORTHO05D004084 6.1e-177 625.5 855 43.2
CANSAT78G0348 Cannabis sativa HOM05D003469 ORTHO05D004084 1.0e-176 624.8 860 43.0
MBI03_g18641_MAGBIO Magnolia biondii HOM05D003469 ORTHO05D004084 1.0e-176 624.8 851 42.5
Potri.013G128900 Populus trichocarpa HOM05D003469 ORTHO05D004084 5.2e-176 622.5 851 43.7
Nitab4.5_0003757g0100 Nicotiana tabacum HOM05D003469 ORTHO05D004084 4.4e-175 619.4 855 42.2
Migut.C00329 Erythranthe guttata HOM05D003469 ORTHO05D004084 7.5e-175 618.6 847 41.3
TPR.G38733 Trifolium pratense HOM05D003469 ORTHO05D004084 7.5e-175 618.6 865 42.1
Medtr4g079390 Medicago truncatula HOM05D003469 ORTHO05D004084 1.3e-174 617.8 853 42.3
RcHm_v2.0_Chr2g0151071 Rosa chinensis HOM05D003469 ORTHO05D004084 6.3e-174 615.5 855 43.0
Lj9C173G0 Lonicera japonica HOM05D003469 ORTHO05D004084 1.0e-171 608.2 852 42.8
Peaxi162Scf00818g00323 Petunia axillaris HOM05D003469 ORTHO05D004084 5.0e-171 605.9 803 42.2
Hund09398 Selenicereus undatus HOM05D003469 ORTHO05D004084 5.0e-171 605.9 834 40.9
Sc09g0010840 Simmondsia chinensis HOM05D003469 ORTHO05D004084 5.0e-171 605.9 853 41.9
Medtr4g074860 Medicago truncatula HOM05D003469 ORTHO05D004084 8.6e-171 605.1 867 41.4
EL10Ac5g10861 Beta vulgaris HOM05D003469 ORTHO05D004084 3.6e-169 599.7 882 40.7
Prupe.8G070000 Prunus persica HOM05D003469 ORTHO05D004084 1.0e-168 598.2 854 41.1
AUR62008300 Chenopodium quinoa HOM05D003469 ORTHO05D004084 2.3e-168 597.0 854 40.2
CAN.G14.42 Capsicum annuum HOM05D003469 ORTHO05D004084 1.5e-167 594.3 857 41.2
Lj9C162G1 Lonicera japonica HOM05D003469 ORTHO05D004084 2.2e-166 590.5 889 40.4
SalBow7G2370 Salvia bowleyana HOM05D003469 ORTHO05D004084 2.2e-166 590.5 897 40.4
TPR.G32330 Trifolium pratense HOM05D003469 ORTHO05D004084 1.6e-164 584.3 835 42.5
Os11g0266800 Oryza sativa ssp. japonica HOM05D003469 ORTHO05D004084 2.0e-164 583.9 847 40.3
Ciclev10026956m.g Citrus clementina HOM05D003469 ORTHO05D004084 2.7e-164 583.6 838 42.0
HanXRQChr09g0266911 Helianthus annuus HOM05D003469 ORTHO05D004084 7.8e-164 582.0 858 40.1
CSS0010807 Camellia sinensis var. sinensis HOM05D003469 ORTHO05D004084 1.7e-163 580.9 858 41.5
RcHm_v2.0_Chr6g0293861 Rosa chinensis HOM05D003469 ORTHO05D004084 3.9e-163 579.7 865 41.0
MD09G1155000 Malus domestica HOM05D003469 ORTHO05D004084 4.7e-161 572.8 850 39.6
DCAR_001477 Daucus carota HOM05D003469 ORTHO05D004084 1.1e-160 571.6 861 41.0
FAN24G3399 Fragaria x ananassa HOM05D003469 ORTHO05D004084 1.4e-160 571.2 862 40.4
unitig_26.g9845 Utricularia gibba HOM05D003469 ORTHO05D004084 2.2e-158 563.9 901 39.7
Aqoxy4G02849 Aquilegia oxysepala HOM05D003469 ORTHO05D004084 2.9e-158 563.5 850 39.9
FAN15G0576 Fragaria x ananassa HOM05D003469 ORTHO05D004084 6.4e-158 562.4 863 39.2
AUR62031062 Chenopodium quinoa HOM05D003469 ORTHO05D004084 4.1e-157 559.7 854 39.1
HPP92_015320 Vanilla planifolia HOM05D003469 ORTHO05D004084 9.2e-157 558.5 839 40.4
Nitab4.5_0005224g0040 Nicotiana tabacum HOM05D003469 ORTHO05D004084 2.8e-153 547.0 849 37.6
Nitab4.5_0002906g0070 Nicotiana tabacum HOM05D003469 ORTHO05D004084 3.7e-150 536.6 844 37.8
Lsat_1_v5_gn_4_131841 Lactuca sativa HOM05D003469 ORTHO05D004084 1.4e-149 534.6 850 38.4
FAN27G0386 Fragaria x ananassa HOM05D003469 ORTHO05D004084 2.4e-149 533.9 858 38.7
SGA_v2.0_scaffold8G04312 Striga asiatica HOM05D003469 ORTHO05D004084 5.4e-149 532.7 926 37.3
Nitab4.5_0002354g0130 Nicotiana tabacum HOM05D003469 ORTHO05D004084 1.6e-148 531.2 851 39.6
SMO164G0159 Selaginella moellendorffii HOM05D003469 ORTHO05D004084 1.5e-146 524.6 864 37.8
Peaxi162Scf00015g00107 Petunia axillaris HOM05D003469 ORTHO05D004084 3.5e-140 503.4 853 36.7
Dinv15687 Davidia involucrata HOM05D003469 ORTHO05D004084 7.8e-140 502.3 855 38.7
Ciclev10019721m.g Citrus clementina HOM05D003469 ORTHO05D004084 1.0e-139 501.9 522 51.9
FvH4_2g25610 Fragaria vesca HOM05D003469 ORTHO05D004084 3.3e-138 496.9 862 36.9
C04p00500 Brassica napus HOM05D003469 ORTHO05D004084 1.6e-137 494.6 496 59.5
Zm00001eb171180 Zea mays HOM05D003469 ORTHO05D004084 6.9e-136 489.2 762 39.5
AUR62039415 Chenopodium quinoa HOM05D003469 ORTHO05D004084 2.2e-134 484.2 673 41.5
Mapoly0024s0108 Marchantia polymorpha HOM05D003469 ORTHO05D004084 1.9e-130 471.1 801 35.7
Lj9A422T76 Lonicera japonica HOM05D003469 ORTHO05D004084 1.8e-123 448.0 754 37.8
Haze_14033 Corylus avellana HOM05D003469 ORTHO05D004084 5.3e-120 436.4 562 45.4
vmacro00914 Vaccinium macrocarpon HOM05D003469 ORTHO05D004084 2.2e-118 431.0 1313 27.8
CDE05G0531 Ceratophyllum demersum HOM05D003469 ORTHO05D004084 2.4e-112 411.0 466 48.1
Pp3c8_10360 Physcomitrium patens HOM05D003469 ORTHO05D004084 1.2e-111 408.7 875 33.9
TAR633G1289 Trochodendron aralioides HOM05D003469 ORTHO05D004084 2.0e-111 407.9 413 52.3
AagrBONN_evm.TU.Sc2ySwM_362.2764 Anthoceros agrestis HOM05D003469 ORTHO05D004084 4.5e-111 406.8 877 32.6
Ca_19034_v3 Cicer arietinum L. HOM05D003469 ORTHO05D004084 6.5e-110 402.9 282 66.7
Pp3c8_10366 Physcomitrium patens HOM05D003469 ORTHO05D004084 8.7e-107 392.5 847 33.8
PGSC0003DMG400033134 Solanum tuberosum HOM05D003469 ORTHO05D004084 1.1e-104 385.6 319 59.9
Ah.15g095790 Amaranthus hybridus HOM05D003469 ORTHO05D004084 3.0e-99 367.5 1340 24.7
BcaC02g12573 Brassica carinata HOM05D003469 ORTHO05D004084 1.7e-97 361.7 241 79.7
MD17G1141100 Malus domestica HOM05D003469 ORTHO05D004084 1.2e-95 355.5 285 61.4
ATR1089G047 Amborella trichopoda HOM05D003469 ORTHO05D004084 1.3e-94 352.1 856 30.7
Oeu019664.1 Olea europaea HOM05D003469 ORTHO05D004084 5.7e-90 336.7 363 46.8
SHI03012 Sapria himalayana HOM05D003469 ORTHO05D004084 2.4e-88 331.3 271 60.5
EL10Ac5g10434 Beta vulgaris HOM05D003469 ORTHO05D004084 5.4e-72 276.9 635 30.4
FvH4_6g38050 Fragaria vesca HOM05D003469 ORTHO05D004084 5.0e-70 270.4 786 29.1
FAN20G2279 Fragaria x ananassa HOM05D003469 ORTHO05D004084 7.5e-66 256.5 472 34.5
TAR633G1719 Trochodendron aralioides HOM05D003469 ORTHO05D004084 3.1e-64 251.1 396 37.6
Ca_16139_v3 Cicer arietinum L. HOM05D003469 ORTHO05D004084 2.0e-63 248.4 321 42.1
Thhalv10002713m.g Eutrema salsugineum HOM05D003469 ORTHO05D004084 2.0e-63 248.4 139 87.8
HanXRQChr13g0406831 Helianthus annuus HOM05D003469 ORTHO05D004084 5.9e-63 246.9 193 58.0
Cpa.g.sc21.245 Carica papaya HOM05D003469 ORTHO05D004084 5.0e-62 243.8 323 40.9
CBR_g36749 Chara braunii HOM05D003469 ORTHO05D004084 1.1e-61 242.7 1088 23.0
FvH4_6g38030 Fragaria vesca HOM05D003469 ORTHO05D004084 1.9e-61 241.9 393 37.7
SEGI_08666 Sequoiadendron giganteum HOM05D003469 ORTHO05D004084 1.4e-59 235.7 177 63.8
MD17G1141000 Malus domestica HOM05D003469 ORTHO05D004084 2.4e-56 224.9 385 33.0
Potri.013G129500 Populus trichocarpa HOM05D003469 ORTHO05D000003 5.9e-55 220.3 395 36.2
COL.COLO4_25121 Corchorus olitorius HOM05D003469 ORTHO05D004084 5.6e-53 213.8 360 37.2
BcaB02g08777 Brassica carinata HOM05D003469 ORTHO05D004084 1.2e-47 196.1 240 61.7
BcaC02g12574 Brassica carinata HOM05D003469 ORTHO05D004084 2.7e-47 194.9 100 94.0
AUR62000094 Chenopodium quinoa HOM05D003469 ORTHO05D004084 3.5e-47 194.5 427 30.2
CDE05G3544 Ceratophyllum demersum HOM05D003469 ORTHO05D004084 2.1e-36 158.7 345 32.2
COL.COLO4_25120 Corchorus olitorius HOM05D003469 ORTHO05D004084 1.8e-35 155.6 453 30.9
Aa31LG2G17580 Aethionema arabicum HOM05D003469 ORTHO05D004084 5.8e-34 150.6 81 86.4
Actinidia02459 Actinidia chinensis HOM05D003469 ORTHO05D004084 3.7e-33 147.9 120 58.3
SHI03015 Sapria himalayana HOM05D003469 ORTHO05D004084 6.4e-33 147.1 246 35.4
ECA232G2749 Erigeron canadensis HOM05D001807 ORTHO05D002044 4.0e-27 127.9 86 65.1
ATR0002G001 Amborella trichopoda HOM05D003469 ORTHO05D004084 2.6e-26 125.2 84 64.3
Rhsim02G0229800 Rhododendron simsii HOM05D000151 ORTHO05D000074 9.9e-26 123.2 80 73.8
vmacro23125 Vaccinium macrocarpon HOM05D003469 ORTHO05D004084 1.7e-25 122.5 149 40.9
Cpa.g.sc21.244 Carica papaya HOM05D003469 ORTHO05D004084 2.9e-25 121.7 85 69.4
SEGI_05114 Sequoiadendron giganteum HOM05D003469 ORTHO05D004084 8.4e-25 120.2 153 43.8
Medtr4g074690 Medicago truncatula HOM05D003469 ORTHO05D004084 2.4e-24 118.6 255 31.0
Haze_14034 Corylus avellana HOM05D003469 ORTHO05D004084 2.1e-23 115.5 125 44.8
Ca_16140_v3 Cicer arietinum L. HOM05D003469 ORTHO05D004084 6.0e-23 114.0 161 37.9
Psat0s3379g0040 Pisum sativum HOM05D003469 ORTHO05D004084 2.1e-20 105.5 110 46.4
Aa31LG2G17590 Aethionema arabicum HOM05D003469 ORTHO05D004084 5.3e-19 100.9 55 85.5
Sp4g05220 Schrenkiella parvula HOM05D003469 ORTHO05D004084 1.2e-18 99.8 53 84.9
QL09p054785 Quercus lobata HOM05D003469 ORTHO05D004084 1.7e-17 95.9 157 39.5
Ciclev10020572m.g Citrus clementina HOM05D003469 ORTHO05D004084 1.1e-16 93.2 310 25.5
Glyma.07G124800 Glycine max HOM05D003469 ORTHO05D004084 2.4e-16 92.0 158 33.5
SHI03013 Sapria himalayana HOM05D003469 ORTHO05D004084 2.3e-14 85.5 91 45.1
Cre10.g464950 Chlamydomonas reinhardtii HOM05D003469 ORTHO05D004084 5.1e-14 84.3 329 24.3
Sabra13G0107500 Salix brachista HOM05D000001 ORTHO05D000003 3.3e-13 81.6 162 34.6
SEGI_39938 Sequoiadendron giganteum HOM05D003469 ORTHO05D004084 2.8e-12 78.6 115 35.7
Oeu035042.1 Olea europaea HOM05D003469 ORTHO05D004084 1.2e-10 73.2 256 27.0
Oeu026515.1 Olea europaea HOM05D003469 ORTHO05D004084 2.0e-10 72.4 91 38.5
Cpa.g.sc21.247 Carica papaya HOM05D003469 ORTHO05D004084 4.5e-10 71.2 118 44.1
PRCOL_00004204 Prasinoderma coloniale HOM05D003469 ORTHO05D004084 9.9e-10 70.1 197 27.9
Psat0s2166g0160 Pisum sativum HOM05D003469 ORTHO05D004084 5.5e-08 64.3 84 41.7
Haze_14035 Corylus avellana HOM05D003469 ORTHO05D004084 1.0e-06 60.1 98 42.9
FAN20G1461 Fragaria x ananassa HOM05D003469 ORTHO05D004084 3.9e-06 58.2 121 33.9


User provided reference genes

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