Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB07g33689 Brassica carinata HOM05D004594 ORTHO05D021612 5.6e-59 230.7 114 100.0
Sp2g14100 Schrenkiella parvula HOM05D004594 ORTHO05D005225 1.4e-14 83.2 63 68.3
Thhalv10005550m.g Eutrema salsugineum HOM05D004594 ORTHO05D005225 1.9e-14 82.8 63 68.3
Aa31LG2G7300 Aethionema arabicum HOM05D004594 ORTHO05D005225 4.2e-14 81.6 63 65.1
AL5G12800 Arabidopsis lyrata HOM05D004594 ORTHO05D005225 2.7e-13 79.0 63 61.9
Carub.0005s0198 Capsella rubella HOM05D004594 ORTHO05D005225 6.0e-13 77.8 63 61.9
AT2G03150 Arabidopsis thaliana HOM05D004594 ORTHO05D005225 1.0e-12 77.0 62 62.9
CARHR145490 Cardamine hirsuta HOM05D004594 ORTHO05D005225 1.3e-12 76.6 63 58.7
A07p04390 Brassica napus HOM05D022080 ORTHO05D021612 2.1e-10 69.3 86 48.8
Prupe.1G277900 Prunus persica HOM05D004594 ORTHO05D005225 1.1e-09 67.0 67 47.8
Ca_04825_v3 Cicer arietinum L. HOM05D004594 ORTHO05D005225 3.1e-09 65.5 61 52.5
Dinv02961 Davidia involucrata HOM05D004594 ORTHO05D005225 5.3e-09 64.7 69 47.8
A09p24110 Brassica napus HOM05D004594 ORTHO05D005225 9.0e-09 63.9 63 60.3
BraA09t38011Z Brassica rapa HOM05D004594 ORTHO05D005225 9.0e-09 63.9 63 60.3
THA.LOC104824075 Tarenaya hassleriana HOM05D004594 ORTHO05D005225 9.0e-09 63.9 69 50.7
BcaC04g21505 Brassica carinata HOM05D004594 ORTHO05D005225 1.2e-08 63.5 63 60.3
C09p31000 Brassica napus HOM05D004594 ORTHO05D005225 1.2e-08 63.5 63 60.3
BolC9t55959H Brassica oleracea HOM05D004594 ORTHO05D005225 1.2e-08 63.5 63 60.3
BcaB07g30683 Brassica carinata HOM05D004594 ORTHO05D005225 1.5e-08 63.2 63 60.3
CiPaw.05G132100 Carya illinoinensis HOM05D004594 ORTHO05D005225 2.6e-08 62.4 68 45.6
MD16G1069300 Malus domestica HOM05D004594 ORTHO05D005225 2.6e-08 62.4 68 42.6
Lj2g0016635 Lotus japonicus HOM05D004594 ORTHO05D005225 4.5e-08 61.6 61 49.2
CANSAT64G0453 Cannabis sativa HOM05D004594 ORTHO05D005225 7.6e-08 60.8 63 46.0
Ciclev10030522m.g Citrus clementina HOM05D004594 ORTHO05D005225 7.6e-08 60.8 63 46.0
Cc00_g08470 Coffea canephora HOM05D004594 ORTHO05D005225 9.9e-08 60.5 69 43.5
QL03p068116 Quercus lobata HOM05D004594 ORTHO05D005225 9.9e-08 60.5 63 47.6
Manes.05G104800 Manihot esculenta HOM05D004594 ORTHO05D005225 1.3e-07 60.1 63 42.9
Glyma.01G051400 Glycine max HOM05D004594 ORTHO05D005225 1.7e-07 59.7 61 47.5
DCAR_013185 Daucus carota HOM05D004594 ORTHO05D005225 2.2e-07 59.3 63 49.2
VMungo1215G3128 Vigna mungo HOM05D004594 ORTHO05D005225 2.2e-07 59.3 61 47.5
Cfa008959 Carpinus fangiana HOM05D004594 ORTHO05D005225 2.9e-07 58.9 68 42.6
Haze_11988 Corylus avellana HOM05D004594 ORTHO05D005225 2.9e-07 58.9 68 42.6
Migut.E00588 Erythranthe guttata HOM05D004594 ORTHO05D005225 2.9e-07 58.9 63 46.0
Glyma.02G109900 Glycine max HOM05D004594 ORTHO05D005225 2.9e-07 58.9 61 47.5
Gohir.A04G146601 Gossypium hirsutum HOM05D004594 ORTHO05D005225 2.9e-07 58.9 68 45.6
Gohir.D04G191200 Gossypium hirsutum HOM05D004594 ORTHO05D005225 2.9e-07 58.9 68 45.6
Gorai.012G186600 Gossypium raimondii HOM05D004594 ORTHO05D005225 2.9e-07 58.9 68 45.6
CiPaw.06G087400 Carya illinoinensis HOM05D004594 ORTHO05D005225 3.8e-07 58.5 63 46.0
Psat2g116320 Pisum sativum HOM05D004594 ORTHO05D005225 3.8e-07 58.5 61 45.9
Duzib248G1210 Durio zibethinus HOM05D004594 ORTHO05D005225 4.9e-07 58.2 68 44.1
Phvul.003G045700 Phaseolus vulgaris HOM05D004594 ORTHO05D005225 4.9e-07 58.2 61 45.9
Thecc.02G342500 Theobroma cacao HOM05D004594 ORTHO05D005225 4.9e-07 58.2 68 45.6
SGA_v2.0_scaffold140G35452 Striga asiatica HOM05D004594 ORTHO05D005225 6.4e-07 57.8 63 46.0
Lalb_Chr10g0098431 Lupinus albus HOM05D004594 ORTHO05D005225 1.1e-06 57.0 61 42.6
TPR.G34709 Trifolium pratense HOM05D004594 ORTHO05D005225 1.1e-06 57.0 62 48.4
Atru.chr11.1750 Acer truncatum HOM05D004594 ORTHO05D005225 1.4e-06 56.6 63 41.3
Sc11g0002090 Simmondsia chinensis HOM05D004594 ORTHO05D005225 1.9e-06 56.2 68 42.6
Potri.010G166100 Populus trichocarpa HOM05D004594 ORTHO05D005225 2.4e-06 55.8 63 38.1
Solyc04g008680.4 Solanum lycopersicum HOM05D004594 ORTHO05D005225 3.2e-06 55.5 64 42.2
Sopen04g003850 Solanum pennellii HOM05D004594 ORTHO05D005225 3.2e-06 55.5 64 42.2
GSVIVG01019950001 Vitis vinifera HOM05D004594 ORTHO05D005225 5.5e-06 54.7 68 42.6
AUR62035898 Chenopodium quinoa HOM05D004594 ORTHO05D005225 9.3e-06 53.9 68 42.6


User provided reference genes

Program Settings