Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB07g33507 Brassica carinata HOM05D006187 ORTHO05D007621 8.8e-119 430.3 209 100.0
C06p05930 Brassica napus HOM05D006187 ORTHO05D007621 6.3e-117 424.1 209 98.1
A06p02950 Brassica napus HOM05D006187 ORTHO05D007621 4.1e-116 421.4 209 97.1
BcaC08g43245 Brassica carinata HOM05D006187 ORTHO05D007621 9.1e-116 420.2 209 97.6
BraA06t23501Z Brassica rapa HOM05D006187 ORTHO05D007621 2.0e-115 419.1 210 97.1
AL1G58340 Arabidopsis lyrata HOM05D006187 ORTHO05D007621 9.4e-113 410.2 207 95.7
Carub.0001s3971 Capsella rubella HOM05D006187 ORTHO05D007621 1.2e-112 409.8 207 95.7
Thhalv10011780m.g Eutrema salsugineum HOM05D006187 ORTHO05D007621 7.9e-112 407.1 207 95.7
AT1G50670 Arabidopsis thaliana HOM05D006187 ORTHO05D007621 1.0e-111 406.8 207 94.7
Sp1g37520 Schrenkiella parvula HOM05D006187 ORTHO05D007621 1.0e-111 406.8 209 94.3
CARHR040720 Cardamine hirsuta HOM05D006187 ORTHO05D007621 3.0e-111 405.2 207 94.2
Aa31LG10G3660 Aethionema arabicum HOM05D006187 ORTHO05D007621 1.3e-109 399.8 207 92.8
THA.LOC104816937 Tarenaya hassleriana HOM05D006187 ORTHO05D007621 6.1e-104 380.9 209 87.1
COL.COLO4_09662 Corchorus olitorius HOM05D006187 ORTHO05D007621 3.9e-103 378.3 209 87.1
Gohir.D01G066500 Gossypium hirsutum HOM05D006187 ORTHO05D007621 4.4e-102 374.8 209 87.1
TAR626G1058 Trochodendron aralioides HOM05D006187 ORTHO05D007621 1.7e-101 372.9 209 85.6
Manes.15G071900 Manihot esculenta HOM05D006187 ORTHO05D007621 2.2e-101 372.5 209 85.2
FvH4_3g22670 Fragaria vesca HOM05D006187 ORTHO05D007621 3.7e-101 371.7 209 84.7
Oeu005532.1 Olea europaea HOM05D006187 ORTHO05D007621 4.8e-101 371.3 207 85.5
RhsimUnG0250600 Rhododendron simsii HOM05D006187 ORTHO05D007621 4.8e-101 371.3 209 84.7
Haze_09689 Corylus avellana HOM05D006187 ORTHO05D007621 8.2e-101 370.5 209 85.2
arahy.Tifrunner.gnm1.ann1.KHU2SV Arachis hypogaea HOM05D006187 ORTHO05D007621 1.1e-100 370.2 209 84.7
arahy.Tifrunner.gnm1.ann1.YIAG1Z Arachis hypogaea HOM05D006187 ORTHO05D007621 1.1e-100 370.2 209 84.7
Dinv22262 Davidia involucrata HOM05D006187 ORTHO05D007621 1.1e-100 370.2 209 83.7
Gohir.A01G079500 Gossypium hirsutum HOM05D006187 ORTHO05D007621 1.1e-100 370.2 209 86.1
Gorai.002G088500 Gossypium raimondii HOM05D006187 ORTHO05D007621 1.1e-100 370.2 209 86.1
Potri.001G435500 Populus trichocarpa HOM05D006187 ORTHO05D007621 1.4e-100 369.8 209 84.7
DCAR_022562 Daucus carota HOM05D006187 ORTHO05D007621 1.8e-100 369.4 207 83.6
RcHm_v2.0_Chr5g0039431 Rosa chinensis HOM05D006187 ORTHO05D007621 4.1e-100 368.2 209 83.3
Cfa020345 Carpinus fangiana HOM05D006187 ORTHO05D007621 7.0e-100 367.5 209 85.2
Thecc.07G036900 Theobroma cacao HOM05D006187 ORTHO05D007621 9.1e-100 367.1 209 83.3
TWI39G1048 Tripterygium wilfordii HOM05D006187 ORTHO05D007621 1.2e-99 366.7 209 82.3
Psat2g010920 Pisum sativum HOM05D006187 ORTHO05D007621 3.5e-99 365.2 209 81.8
Cc05_g13690 Coffea canephora HOM05D006187 ORTHO05D007621 4.5e-99 364.8 209 83.7
Duzib170G0579 Durio zibethinus HOM05D006187 ORTHO05D007621 4.5e-99 364.8 209 83.7
VMungo0647G0583 Vigna mungo HOM05D006187 ORTHO05D007621 5.9e-99 364.4 209 82.8
ECA246G0646 Erigeron canadensis HOM05D006187 ORTHO05D007621 7.7e-99 364.0 207 83.1
Ciclev10009486m.g Citrus clementina HOM05D006187 ORTHO05D007621 1.3e-98 363.2 209 83.3
LjContig00272g0005891 Lotus japonicus HOM05D006187 ORTHO05D007621 1.3e-98 363.2 209 81.8
Dinv40753 Davidia involucrata HOM05D006187 ORTHO05D007621 1.7e-98 362.8 209 83.3
Prupe.4G212700 Prunus persica HOM05D006187 ORTHO05D007621 1.7e-98 362.8 209 82.8
Solyc07g064590.3 Solanum lycopersicum HOM05D006187 ORTHO05D007621 1.7e-98 362.8 207 83.1
Nn1g03532 Nelumbo nucifera HOM05D006187 ORTHO05D007621 2.9e-98 362.1 209 82.3
TPR.G1184 Trifolium pratense HOM05D006187 ORTHO05D007621 3.8e-98 361.7 209 81.3
FAN16G3112 Fragaria x ananassa HOM05D006187 ORTHO05D007621 5.0e-98 361.3 221 80.1
Peaxi162Scf00964g00021 Petunia axillaris HOM05D006187 ORTHO05D007621 5.0e-98 361.3 207 83.1
Sopen07g032780 Solanum pennellii HOM05D006187 ORTHO05D007621 6.5e-98 360.9 207 82.6
PGSC0003DMG400022319 Solanum tuberosum HOM05D006187 ORTHO05D007621 8.5e-98 360.5 207 82.6
PSO210G0259 Papaver somniferum HOM05D006187 ORTHO05D007621 1.1e-97 360.1 207 81.6
CiPaw.11G189300 Carya illinoinensis HOM05D006187 ORTHO05D007621 1.5e-97 359.8 209 84.2
MSTRG.26280 Avicennia marina HOM05D006187 ORTHO05D007621 1.9e-97 359.4 209 80.9
Ca_06320_v3 Cicer arietinum L. HOM05D006187 ORTHO05D007621 1.9e-97 359.4 209 82.3
Ca_30809_v3 Cicer arietinum L. HOM05D006187 ORTHO05D007621 1.9e-97 359.4 209 82.3
PGR083G2749 Punica granatum HOM05D006187 ORTHO05D007621 1.9e-97 359.4 209 81.8
Lalb_Chr10g0106971 Lupinus albus HOM05D006187 ORTHO05D007621 2.5e-97 359.0 209 80.9
Phvul.008G266900 Phaseolus vulgaris HOM05D006187 ORTHO05D007621 3.2e-97 358.6 209 81.3
Potri.011G139500 Populus trichocarpa HOM05D006187 ORTHO05D007621 3.2e-97 358.6 209 83.3
unitig_746.g26546 Utricularia gibba HOM05D006187 ORTHO05D007621 4.2e-97 358.2 209 80.4
MD11G1218600 Malus domestica HOM05D006187 ORTHO05D007621 5.5e-97 357.8 209 82.3
CAN.G337.132 Capsicum annuum HOM05D006187 ORTHO05D007621 7.2e-97 357.5 207 82.1
Eucgr.F00764 Eucalyptus grandis HOM05D006187 ORTHO05D007621 7.2e-97 357.5 209 81.8
PSO832G1277 Papaver somniferum HOM05D006187 ORTHO05D007621 9.4e-97 357.1 207 80.7
Aqoxy1G03401 Aquilegia oxysepala HOM05D006187 ORTHO05D007621 3.6e-96 355.1 207 82.1
CiPaw.12G129700 Carya illinoinensis HOM05D006187 ORTHO05D007621 3.6e-96 355.1 209 81.8
FAN11G0395 Fragaria x ananassa HOM05D006187 ORTHO05D007621 3.6e-96 355.1 230 77.0
CANSAT11G0252 Cannabis sativa HOM05D006187 ORTHO05D007621 1.4e-95 353.2 209 79.4
FAN25G1478 Fragaria x ananassa HOM05D006187 ORTHO05D007621 1.4e-95 353.2 230 76.5
HPP92_016292 Vanilla planifolia HOM05D006187 ORTHO05D007621 1.4e-95 353.2 207 80.2
Zm00001eb207490 Zea mays HOM05D006187 ORTHO05D007621 1.4e-95 353.2 207 80.7
Migut.K00331 Erythranthe guttata HOM05D006187 ORTHO05D007621 1.8e-95 352.8 207 79.2
CSS0049447 Camellia sinensis var. sinensis HOM05D006187 ORTHO05D007621 3.0e-95 352.1 207 81.2
GSVIVG01037647001 Vitis vinifera HOM05D006187 ORTHO05D007621 3.0e-95 352.1 209 80.4
FAN21G2137 Fragaria x ananassa HOM05D006187 ORTHO05D007621 8.8e-95 350.5 240 73.8
AUR62020447 Chenopodium quinoa HOM05D006187 ORTHO05D007621 1.2e-94 350.1 209 79.9
CsaV3_7G021800 Cucumis sativus L. HOM05D006187 ORTHO05D007621 2.0e-94 349.4 209 79.4
ATR0794G016 Amborella trichopoda HOM05D006187 ORTHO05D007621 3.3e-94 348.6 209 79.9
AUR62015764 Chenopodium quinoa HOM05D006187 ORTHO05D007621 3.3e-94 348.6 209 78.9
Oeu062696.2 Olea europaea HOM05D006187 ORTHO05D007621 3.3e-94 348.6 241 72.2
CSS0042680 Camellia sinensis var. sinensis HOM05D006187 ORTHO05D007621 4.4e-94 348.2 209 79.9
Ah.06g186030 Amaranthus hybridus HOM05D006187 ORTHO05D007621 9.7e-94 347.1 209 78.0
Sed0017183 Sechium edule HOM05D006187 ORTHO05D007621 1.3e-93 346.7 209 78.0
SalBow5G2755 Salvia bowleyana HOM05D006187 ORTHO05D007621 1.1e-92 343.6 223 74.9
Sc16g0006050 Simmondsia chinensis HOM05D006187 ORTHO05D007621 4.1e-92 341.7 209 78.9
EL10Ac4g07806 Beta vulgaris HOM05D006187 ORTHO05D007621 2.7e-91 339.0 207 77.8
SGA_v2.0_scaffold347G49550 Striga asiatica HOM05D006187 ORTHO05D007621 2.7e-91 339.0 209 76.6
Lsat_1_v5_gn_5_3960 Lactuca sativa HOM05D006187 ORTHO05D007621 6.5e-90 334.3 191 84.8
BolC6t35706H Brassica oleracea HOM05D006187 ORTHO05D007621 1.9e-89 332.8 165 97.6
Lalb_Chr17g0348481 Lupinus albus HOM05D006187 ORTHO05D007621 9.4e-89 330.5 190 82.6
Medtr5g092720 Medicago truncatula HOM05D006187 ORTHO05D007621 9.4e-89 330.5 190 81.6
HanXRQChr08g0233871 Helianthus annuus HOM05D006187 ORTHO05D007621 2.1e-88 329.3 185 85.9
Glyma.02G291000 Glycine max HOM05D006187 ORTHO05D007621 8.0e-88 327.4 187 84.0
TWI38G1854 Tripterygium wilfordii HOM05D006187 ORTHO05D007621 1.8e-87 326.2 187 82.4
Actinidia35344 Actinidia chinensis HOM05D006187 ORTHO05D007621 2.3e-87 325.9 209 75.1
Glyma.14G023700 Glycine max HOM05D006187 ORTHO05D007621 4.0e-87 325.1 185 84.3
CDE05G0514 Ceratophyllum demersum HOM05D006187 ORTHO05D007621 5.2e-87 324.7 209 74.2
HanXRQChr05g0159371 Helianthus annuus HOM05D006187 ORTHO05D007621 8.8e-87 323.9 185 84.3
Sabra11G0125500 Salix brachista HOM05D006187 ORTHO05D007621 2.6e-86 322.4 288 60.4
SEGI_20110 Sequoiadendron giganteum HOM05D006187 ORTHO05D007621 2.6e-86 322.4 206 71.8
MELO3C013167.2 Cucumis melo HOM05D006187 ORTHO05D007621 2.4e-84 315.8 189 78.3
ClCG09G010800 Citrullus lanatus HOM05D006187 ORTHO05D007621 5.4e-84 314.7 209 73.2
Mapoly0105s0022 Marchantia polymorpha HOM05D006187 ORTHO05D007621 2.0e-83 312.8 209 69.9
SMO201G0052 Selaginella moellendorffii HOM05D006187 ORTHO05D007621 2.3e-82 309.3 208 68.3
Pp3c26_11120 Physcomitrium patens HOM05D006187 ORTHO05D007621 1.9e-81 306.2 206 69.4
AagrBONN_evm.TU.Sc2ySwM_344.4367 Anthoceros agrestis HOM05D004720 ORTHO05D007621 3.7e-77 292.0 205 64.9
Nitab4.5_0011129g0020 Nicotiana tabacum HOM05D006187 ORTHO05D007621 2.5e-73 279.3 207 68.6
QL08p010320 Quercus lobata HOM05D006187 ORTHO05D007621 2.3e-71 272.7 197 68.0
vmacro09715 Vaccinium macrocarpon HOM05D006187 ORTHO05D007621 4.0e-71 271.9 165 77.0
Lj1A872G52 Lonicera japonica HOM05D006187 ORTHO05D007621 1.6e-67 260.0 150 82.0
MCO07G461 Micromonas commoda HOM05D006187 ORTHO05D007621 3.3e-65 252.3 204 59.8
Cre09.g409050 Chlamydomonas reinhardtii HOM05D006187 ORTHO05D007621 7.3e-65 251.1 204 60.3
SHI26611 Sapria himalayana HOM05D006187 ORTHO05D007621 7.5e-62 241.1 179 65.4
Hma1.2p1_0673F.1_g201350 Hydrangea macrophylla HOM05D006187 ORTHO05D007621 1.4e-60 236.9 209 60.8
PSO675G5262 Papaver somniferum HOM05D006187 ORTHO05D007621 1.2e-59 233.8 210 55.2
CBR_g54108 Chara braunii HOM05D006187 ORTHO05D007621 3.0e-58 229.2 167 65.3
HPP92_016312 Vanilla planifolia HOM05D006187 ORTHO05D007621 6.6e-58 228.0 134 79.9
PRCOL_00006206 Prasinoderma coloniale HOM05D006187 ORTHO05D007621 5.8e-54 214.9 206 53.9
Cpa.g.sc97.3 Carica papaya HOM05D006187 ORTHO05D007621 5.8e-46 188.3 152 61.8
PSO541G4439 Papaver somniferum HOM05D006187 ORTHO05D007621 6.4e-45 184.9 206 47.1
Haze_26155 Corylus avellana HOM05D006187 ORTHO05D007621 2.1e-40 169.9 207 39.6
Cre06.g274700 Chlamydomonas reinhardtii HOM05D006187 ORTHO05D007621 3.8e-37 159.1 145 51.7
MBI18_g14476_MAGBIO Magnolia biondii HOM05D006187 ORTHO05D007621 9.3e-36 154.5 149 56.4
Prupe.4G233700 Prunus persica HOM05D006187 ORTHO05D007621 9.6e-33 144.4 146 54.8
Os02g0164800 Oryza sativa ssp. japonica HOM05D006187 ORTHO05D007621 2.1e-32 143.3 82 81.7
PSO675G9324 Papaver somniferum HOM05D006187 ORTHO05D007621 6.9e-31 138.3 135 48.9
Nitab4.5_0001913g0160 Nicotiana tabacum HOM05D006187 ORTHO05D007621 4.5e-30 135.6 82 76.8
Cfa025770 Carpinus fangiana HOM05D006187 ORTHO05D007621 3.8e-29 132.5 226 37.2
HPP92_016311 Vanilla planifolia HOM05D006187 ORTHO05D007621 4.3e-25 119.0 74 75.7
AUR62015776 Chenopodium quinoa HOM05D006187 ORTHO05D007621 4.3e-17 92.4 76 63.2
QL08p010315 Quercus lobata HOM05D006187 ORTHO05D007621 3.7e-16 89.4 42 95.2


User provided reference genes

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