Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB07g32983 Brassica carinata HOM05D004871 ORTHO05D005755 3.8e-67 258.1 132 100.0
BraA04t17009Z Brassica rapa HOM05D004871 ORTHO05D005755 2.3e-56 222.2 126 88.9
A04p13500 Brassica napus HOM05D004871 ORTHO05D005755 5.1e-56 221.1 126 88.1
C04p47280 Brassica napus HOM05D004871 ORTHO05D005755 1.5e-55 219.5 126 87.3
BolC4t26328H Brassica oleracea HOM05D004871 ORTHO05D005755 1.5e-55 219.5 126 87.3
Sp7g01440 Schrenkiella parvula HOM05D004871 ORTHO05D005755 4.8e-54 214.5 126 84.9
Thhalv10028043m.g Eutrema salsugineum HOM05D004871 ORTHO05D005755 9.3e-50 200.3 126 80.2
CARHR261520 Cardamine hirsuta HOM05D004871 ORTHO05D005755 8.7e-48 193.7 126 76.2
AT5G40470 Arabidopsis thaliana HOM05D004871 ORTHO05D005755 1.7e-43 179.5 126 72.2
AL7G49360 Arabidopsis lyrata HOM05D004871 ORTHO05D005755 1.4e-42 176.4 126 70.6
Aa31LG9G1150 Aethionema arabicum HOM05D004871 ORTHO05D005755 1.8e-40 169.5 126 68.3
Carub.0007s3511 Capsella rubella HOM05D004871 ORTHO05D005755 3.3e-39 165.2 127 69.3
THA.LOC104825322 Tarenaya hassleriana HOM05D004871 ORTHO05D005755 1.2e-33 146.7 126 61.1
Lj1g0007322 Lotus japonicus HOM05D004871 ORTHO05D005755 7.9e-33 144.1 123 56.9
Manes.15G150700 Manihot esculenta HOM05D004871 ORTHO05D005755 1.3e-32 143.3 127 57.5
Cpa.g.sc130.82 Carica papaya HOM05D004871 ORTHO05D005755 1.8e-32 142.9 127 56.7
Atru.chr6.2393 Acer truncatum HOM05D004871 ORTHO05D005755 2.3e-32 142.5 127 55.9
Gohir.A05G355800 Gossypium hirsutum HOM05D004871 ORTHO05D005755 5.1e-32 141.4 123 56.9
MD17G1027100 Malus domestica HOM05D004871 ORTHO05D005755 5.1e-32 141.4 126 54.0
TAR622G0125 Trochodendron aralioides HOM05D004871 ORTHO05D005755 5.1e-32 141.4 123 56.9
TWI12G0316 Tripterygium wilfordii HOM05D004871 ORTHO05D005755 6.7e-32 141.0 123 57.7
QL02p074723 Quercus lobata HOM05D004871 ORTHO05D005755 8.7e-32 140.6 123 56.1
CANSAT64G1143 Cannabis sativa HOM05D004871 ORTHO05D005755 1.1e-31 140.2 126 53.2
CiPaw.04G028400 Carya illinoinensis HOM05D004871 ORTHO05D005755 1.1e-31 140.2 126 54.8
Peaxi162Scf00129g00168 Petunia axillaris HOM05D004871 ORTHO05D005755 1.1e-31 140.2 127 55.1
Thecc.04G017200 Theobroma cacao HOM05D004871 ORTHO05D005755 1.5e-31 139.8 127 55.9
CSS0032397 Camellia sinensis var. sinensis HOM05D004871 ORTHO05D005755 1.9e-31 139.4 126 55.6
CiPaw.03G043700 Carya illinoinensis HOM05D004871 ORTHO05D005755 3.3e-31 138.7 123 56.1
Eucgr.J02242 Eucalyptus grandis HOM05D004871 ORTHO05D005755 4.3e-31 138.3 126 53.2
Hma1.2p1_2120F.1_g314420 Hydrangea macrophylla HOM05D004871 ORTHO05D005755 4.3e-31 138.3 127 52.8
MD09G1027100 Malus domestica HOM05D004871 ORTHO05D005755 4.3e-31 138.3 124 54.8
Dinv33442 Davidia involucrata HOM05D005666 ORTHO05D007183 7.4e-31 137.5 123 56.9
COL.COLO4_29115 Corchorus olitorius HOM05D004871 ORTHO05D005755 1.3e-30 136.7 126 54.8
FAN09G0732 Fragaria x ananassa HOM05D000795 ORTHO05D005755 1.3e-30 136.7 123 53.7
FAN14G1702 Fragaria x ananassa HOM05D004871 ORTHO05D005755 1.3e-30 136.7 123 53.7
FvH4_6g51200 Fragaria vesca HOM05D004871 ORTHO05D005755 1.7e-30 136.3 123 53.7
Nn3g16731 Nelumbo nucifera HOM05D004871 ORTHO05D005755 1.7e-30 136.3 124 53.2
Nn3g16736 Nelumbo nucifera HOM05D004871 ORTHO05D005755 1.7e-30 136.3 124 53.2
Prupe.3G291600 Prunus persica HOM05D004871 ORTHO05D005755 1.7e-30 136.3 125 55.2
Lalb_Chr14g0362771 Lupinus albus HOM05D004871 ORTHO05D005755 2.2e-30 136.0 124 54.8
Lalb_Chr24g0402861 Lupinus albus HOM05D004871 ORTHO05D005755 2.2e-30 136.0 124 55.6
Rhsim08G0049200 Rhododendron simsii HOM05D004871 ORTHO05D005755 2.2e-30 136.0 126 55.6
Eucgr.H01852 Eucalyptus grandis HOM05D004871 ORTHO05D005755 2.8e-30 135.6 126 52.4
Eucgr.L00043 Eucalyptus grandis HOM05D004871 ORTHO05D005755 2.8e-30 135.6 126 52.4
Gohir.D04G057500 Gossypium hirsutum HOM05D004871 ORTHO05D005755 2.8e-30 135.6 123 54.5
Gohir.D07G229900 Gossypium hirsutum HOM05D004871 ORTHO05D005755 2.8e-30 135.6 127 55.1
Gorai.001G265000 Gossypium raimondii HOM05D004871 ORTHO05D005755 2.8e-30 135.6 127 55.1
Gorai.012G064200 Gossypium raimondii HOM05D004871 ORTHO05D005755 2.8e-30 135.6 123 54.5
PGR083G0754 Punica granatum HOM05D004871 ORTHO05D005755 2.8e-30 135.6 126 53.2
RcHm_v2.0_Chr2g0172801 Rosa chinensis HOM05D004871 ORTHO05D005755 3.7e-30 135.2 124 53.2
Duzib147G1217 Durio zibethinus HOM05D004871 ORTHO05D005755 4.8e-30 134.8 127 54.3
FAN02G2556 Fragaria x ananassa HOM05D004871 ORTHO05D005755 4.8e-30 134.8 123 53.7
Cfa007369 Carpinus fangiana HOM05D004871 ORTHO05D005755 6.3e-30 134.4 122 54.1
Haze_14739 Corylus avellana HOM05D004871 ORTHO05D005755 6.3e-30 134.4 122 54.1
Nitab4.5_0002468g0010 Nicotiana tabacum HOM05D004871 ORTHO05D005755 6.3e-30 134.4 127 52.8
Aqoxy5G03783 Aquilegia oxysepala HOM05D004871 ORTHO05D005755 1.1e-29 133.7 118 55.1
CAN.G473.11 Capsicum annuum HOM05D004871 ORTHO05D005755 3.1e-29 132.1 127 52.8
Ca_23007_v3 Cicer arietinum L. HOM05D004871 ORTHO05D005755 3.1e-29 132.1 126 54.0
GSVIVG01032408001 Vitis vinifera HOM05D004871 ORTHO05D005755 5.3e-29 131.3 127 50.4
Ciclev10015079m.g Citrus clementina HOM05D004871 ORTHO05D005755 6.9e-29 131.0 126 52.4
Psat3g166880 Pisum sativum HOM05D004871 ORTHO05D005755 6.9e-29 131.0 125 52.0
Atru.chr6.2392 Acer truncatum HOM05D004871 ORTHO05D005755 1.2e-28 130.2 125 53.6
Potri.017G069800 Populus trichocarpa HOM05D004871 ORTHO05D005755 1.2e-28 130.2 122 51.6
Sc16g0004350 Simmondsia chinensis HOM05D004871 ORTHO05D005755 1.2e-28 130.2 123 52.8
Glyma.19G068600 Glycine max HOM05D004871 ORTHO05D005755 1.5e-28 129.8 123 52.8
Rhsim08G0050600 Rhododendron simsii HOM05D004871 ORTHO05D005755 1.5e-28 129.8 126 52.4
SalBow1G4779 Salvia bowleyana HOM05D004871 ORTHO05D005755 1.5e-28 129.8 129 52.7
VMungo1383G0924 Vigna mungo HOM05D004871 ORTHO05D005755 1.5e-28 129.8 113 58.4
Sabra17G0062100 Salix brachista HOM05D004871 ORTHO05D005755 2.0e-28 129.4 122 51.6
PGSC0003DMG400012633 Solanum tuberosum HOM05D004871 ORTHO05D005755 2.0e-28 129.4 127 52.8
SalBow2G2412 Salvia bowleyana HOM05D004871 ORTHO05D005755 2.6e-28 129.0 127 52.8
Sopen02g031150 Solanum pennellii HOM05D004871 ORTHO05D005755 3.4e-28 128.6 127 52.8
Medtr7g033720 Medicago truncatula HOM05D004871 ORTHO05D005755 5.9e-28 127.9 127 52.0
TAR371G1027 Trochodendron aralioides HOM05D004871 ORTHO05D005755 7.7e-28 127.5 124 50.0
Nitab4.5_0003318g0120 Nicotiana tabacum HOM05D004871 ORTHO05D005755 1.0e-27 127.1 127 51.2
PSO063G1038 Papaver somniferum HOM05D004871 ORTHO05D005755 1.0e-27 127.1 117 56.4
Phvul.008G154600 Phaseolus vulgaris HOM05D004871 ORTHO05D005755 1.0e-27 127.1 123 53.7
Rhsim08G0048900 Rhododendron simsii HOM05D004871 ORTHO05D005755 1.0e-27 127.1 125 52.0
BcaB06g27513 Brassica carinata HOM05D004871 ORTHO05D005755 1.3e-27 126.7 95 73.7
ClCG10G013890 Citrullus lanatus HOM05D004871 ORTHO05D005755 1.7e-27 126.3 123 50.4
Migut.H00077 Erythranthe guttata HOM05D004871 ORTHO05D005755 1.7e-27 126.3 129 53.5
PSO832G2649 Papaver somniferum HOM05D004871 ORTHO05D005755 1.7e-27 126.3 117 55.6
Cc07_g01680 Coffea canephora HOM05D004871 ORTHO05D005755 2.2e-27 125.9 118 53.4
Lju41C42T3 Lonicera japonica HOM05D004871 ORTHO05D005755 2.2e-27 125.9 127 51.2
CsaV3_3G042800 Cucumis sativus L. HOM05D004871 ORTHO05D005755 2.9e-27 125.6 123 49.6
Peaxi162Scf00129g01652 Petunia axillaris HOM05D004871 ORTHO05D005755 2.9e-27 125.6 120 53.3
MELO3C026581.2 Cucumis melo HOM05D004871 ORTHO05D005755 3.8e-27 125.2 117 51.3
Oeu054623.1 Olea europaea HOM05D004871 ORTHO05D005755 1.4e-26 123.2 129 50.4
MSTRG.24039 Avicennia marina HOM05D004871 ORTHO05D005755 2.5e-26 122.5 129 50.4
Glyma.16G071200 Glycine max HOM05D004871 ORTHO05D005755 4.2e-26 121.7 122 50.8
Oeu018139.1 Olea europaea HOM05D004871 ORTHO05D005755 5.5e-26 121.3 129 50.4
HPP92_009906 Vanilla planifolia HOM05D004871 ORTHO05D005755 2.1e-25 119.4 121 52.9
vmacro18284 Vaccinium macrocarpon HOM05D004871 ORTHO05D005755 3.6e-25 118.6 116 50.9
vmacro23391 Vaccinium macrocarpon HOM05D004871 ORTHO05D005755 3.6e-25 118.6 116 50.9
TAR371G0422 Trochodendron aralioides HOM05D004871 ORTHO05D005755 7.9e-25 117.5 123 48.8
CDE08G0710 Ceratophyllum demersum HOM05D004871 ORTHO05D005755 1.8e-24 116.3 126 47.6
Sed0007166 Sechium edule HOM05D004871 ORTHO05D005755 3.0e-24 115.5 126 46.0
TAR371G0152 Trochodendron aralioides HOM05D004871 ORTHO05D005755 3.9e-24 115.2 123 48.0
CSS0034270 Camellia sinensis var. sinensis HOM05D004871 ORTHO05D005755 5.1e-24 114.8 98 59.2
TAR371G0343 Trochodendron aralioides HOM05D004871 ORTHO05D005755 5.1e-24 114.8 123 48.0
DCAR_021722 Daucus carota HOM05D004871 ORTHO05D005755 6.7e-24 114.4 121 47.9
Lj7C599T13 Lonicera japonica HOM05D004871 ORTHO05D005755 6.7e-24 114.4 125 49.6
SGA_v2.0_scaffold18G08277 Striga asiatica HOM05D004871 ORTHO05D005755 8.8e-24 114.0 127 51.2
ATR0686G244 Amborella trichopoda HOM05D004871 ORTHO05D005755 1.5e-23 113.2 117 50.4
HanXRQChr17g0548491 Helianthus annuus HOM05D004871 ORTHO05D005755 1.5e-23 113.2 127 45.7
unitig_899.g14805 Utricularia gibba HOM05D004871 ORTHO05D005755 2.6e-23 112.5 119 51.3
Rhsim08G0050100 Rhododendron simsii HOM05D004871 ORTHO05D005755 3.3e-23 112.1 125 48.0
Dinv35106 Davidia involucrata HOM05D004871 ORTHO05D005755 5.7e-23 111.3 95 58.9
FAN05G3698 Fragaria x ananassa HOM05D004871 ORTHO05D005755 1.3e-22 110.2 97 56.7
Lsat_1_v5_gn_0_47681 Lactuca sativa HOM05D004871 ORTHO05D005755 2.8e-22 109.0 127 44.1
Zm00001eb246170 Zea mays HOM05D004871 ORTHO05D005755 2.8e-22 109.0 123 46.3
Rhsim08G0050200 Rhododendron simsii HOM05D004871 ORTHO05D005755 3.7e-22 108.6 123 47.2
Rhsim08G0049400 Rhododendron simsii HOM05D004871 ORTHO05D005755 1.4e-21 106.7 128 48.4
HanXRQChr15g0475301 Helianthus annuus HOM05D004871 ORTHO05D005755 3.1e-21 105.5 118 45.8
Rhsim08G0049600 Rhododendron simsii HOM05D004871 ORTHO05D005755 4.1e-21 105.1 127 48.0
TAR633G0371 Trochodendron aralioides HOM05D004871 ORTHO05D005755 4.1e-21 105.1 123 45.5
Rhsim08G0050300 Rhododendron simsii HOM05D004871 ORTHO05D005755 2.0e-20 102.8 126 45.2
FAN09G0037 Fragaria x ananassa HOM05D004871 ORTHO05D005755 3.4e-20 102.1 115 47.0
vmacro18283 Vaccinium macrocarpon HOM05D004871 ORTHO05D005755 4.5e-20 101.7 126 43.7
vmacro18285 Vaccinium macrocarpon HOM05D004871 ORTHO05D005755 1.0e-19 100.5 127 45.7
vmacro23392 Vaccinium macrocarpon HOM05D004871 ORTHO05D005755 1.0e-19 100.5 127 45.7
vmacro23390 Vaccinium macrocarpon HOM05D004871 ORTHO05D005755 1.3e-19 100.1 126 42.9
Rhsim08G0050000 Rhododendron simsii HOM05D004871 ORTHO05D005755 2.2e-19 99.4 132 40.9
TPR.G1076 Trifolium pratense HOM05D004871 ORTHO05D005755 8.5e-19 97.4 91 53.8
Rhsim08G0049300 Rhododendron simsii HOM05D004871 ORTHO05D005755 2.5e-18 95.9 126 43.7
CSS0039002 Camellia sinensis var. sinensis HOM05D004871 ORTHO05D005755 4.2e-18 95.1 87 54.0
FAN27G1866 Fragaria x ananassa HOM05D004871 ORTHO05D005755 5.5e-18 94.7 113 46.0
SMO298G0062 Selaginella moellendorffii HOM05D004871 ORTHO05D005755 8.0e-17 90.9 119 42.9
Rhsim08G0049500 Rhododendron simsii HOM05D004871 ORTHO05D005755 8.8e-16 87.4 126 42.1
Rhsim08G0050400 Rhododendron simsii HOM05D004871 ORTHO05D005755 2.6e-15 85.9 125 44.0
FAN05G1656 Fragaria x ananassa HOM05D004871 ORTHO05D005755 1.8e-13 79.7 86 46.5
Rhsim08G0049900 Rhododendron simsii HOM05D004871 ORTHO05D005755 1.8e-13 79.7 120 40.8
Peaxi162Scf00129g01633 Petunia axillaris HOM05D004871 ORTHO05D005755 9.1e-13 77.4 77 49.4
CSS0033026 Camellia sinensis var. sinensis HOM05D004871 ORTHO05D005755 3.5e-12 75.5 72 51.4
FAN05G3297 Fragaria x ananassa HOM05D004871 ORTHO05D005755 7.7e-12 74.3 98 42.9
Rhsim08G0050500 Rhododendron simsii HOM05D004871 ORTHO05D005755 2.9e-11 72.4 127 40.2
TAR374G1232 Trochodendron aralioides HOM05D004871 ORTHO05D005755 2.9e-11 72.4 83 48.2
BcaB01g01386 Brassica carinata HOM05D004106 ORTHO05D005755 5.5e-10 68.2 40 85.0
HanXRQChr07g0188231 Helianthus annuus HOM05D004871 ORTHO05D005755 7.2e-10 67.8 81 43.2
FAN14G0631 Fragaria x ananassa HOM05D004871 ORTHO05D005755 1.2e-09 67.0 72 50.0
TAR629G3424 Trochodendron aralioides HOM05D004871 ORTHO05D005755 2.1e-09 66.2 126 31.0
Nn1g05920 Nelumbo nucifera HOM05D004871 ORTHO05D005755 9.7e-07 57.4 64 46.9


User provided reference genes

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