Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB07g32834 Brassica carinata HOM05D006505 ORTHO05D008086 1.6e-172 609.4 324 100.0
BcaC05g27199 Brassica carinata HOM05D006505 ORTHO05D008086 3.0e-150 535.4 326 85.0
BolC5t31830H Brassica oleracea HOM05D006505 ORTHO05D008086 3.0e-150 535.4 326 85.0
C05p31050 Brassica napus HOM05D006505 ORTHO05D008086 2.7e-143 512.3 326 86.5
BraA09t38992Z Brassica rapa HOM05D006505 ORTHO05D008086 4.3e-141 505.0 326 86.5
A09p34510 Brassica napus HOM05D006505 ORTHO05D008086 1.1e-139 500.4 326 85.9
Sp1g27520 Schrenkiella parvula HOM05D006505 ORTHO05D008086 5.3e-131 471.5 328 76.8
Thhalv10008153m.g Eutrema salsugineum HOM05D006505 ORTHO05D008086 3.8e-121 438.7 338 74.6
AL5G22520 Arabidopsis lyrata HOM05D006505 ORTHO05D008086 9.4e-120 434.1 338 70.4
Carub.0001s3014 Capsella rubella HOM05D006505 ORTHO05D008086 5.9e-114 414.8 337 68.0
AT1G31817 Arabidopsis thaliana HOM05D006505 ORTHO05D008086 4.4e-109 398.7 338 66.3
AL1G45900 Arabidopsis lyrata HOM05D006505 ORTHO05D008086 5.7e-109 398.3 326 66.9
CARHR031150 Cardamine hirsuta HOM05D006505 ORTHO05D008086 9.7e-109 397.5 338 66.0
BcaB03g13787 Brassica carinata HOM05D006505 ORTHO05D008086 1.8e-102 376.7 329 70.8
Aa31LG2G14220 Aethionema arabicum HOM05D006505 ORTHO05D008086 5.4e-75 285.4 326 53.1
C05p39630 Brassica napus HOM05D006505 ORTHO05D008086 5.6e-64 248.8 302 53.3
BolC5t32703H Brassica oleracea HOM05D006505 ORTHO05D008086 8.1e-63 245.0 284 55.6
THA.LOC104798517 Tarenaya hassleriana HOM05D006505 ORTHO05D008086 1.4e-62 244.2 202 60.9
THA.LOC104798644 Tarenaya hassleriana HOM05D006505 ORTHO05D008086 1.0e-57 228.0 213 56.3
Cfa016168 Carpinus fangiana HOM05D006505 ORTHO05D008086 2.4e-54 216.9 183 61.2
QL09p007239 Quercus lobata HOM05D006505 ORTHO05D008086 2.4e-54 216.9 175 61.7
Haze_00287 Corylus avellana HOM05D006505 ORTHO05D008086 5.3e-54 215.7 183 61.2
Ciclev10016360m.g Citrus clementina HOM05D006505 ORTHO05D008086 1.9e-51 207.2 181 59.7
CiPaw.05G198000 Carya illinoinensis HOM05D006505 ORTHO05D008086 9.3e-51 204.9 207 55.1
TPR.G33266 Trifolium pratense HOM05D006505 ORTHO05D008086 1.6e-50 204.1 170 57.1
CSS0016706 Camellia sinensis var. sinensis HOM05D006505 ORTHO05D008086 4.6e-50 202.6 177 61.0
CSS0048860 Camellia sinensis var. sinensis HOM05D006505 ORTHO05D008086 4.6e-50 202.6 177 61.0
Atru.chr5.2699 Acer truncatum HOM05D006505 ORTHO05D008086 6.0e-50 202.2 154 65.6
TWI56G0195 Tripterygium wilfordii HOM05D006505 ORTHO05D008086 1.0e-49 201.4 144 66.0
Rhsim11G0024600 Rhododendron simsii HOM05D006505 ORTHO05D008086 1.7e-49 200.7 205 54.1
CSS0001335 Camellia sinensis var. sinensis HOM05D006505 ORTHO05D008086 2.3e-49 200.3 197 56.3
CSS0032447 Camellia sinensis var. sinensis HOM05D006505 ORTHO05D008086 2.3e-49 200.3 197 56.3
Lalb_Chr03g0033021 Lupinus albus HOM05D006505 ORTHO05D008086 3.0e-49 199.9 161 60.9
Medtr6g004800 Medicago truncatula HOM05D006505 ORTHO05D008086 3.0e-49 199.9 170 55.9
Lj9C390T7 Lonicera japonica HOM05D006505 ORTHO05D008086 1.5e-48 197.6 179 59.2
Glyma.09G152000 Glycine max HOM05D006505 ORTHO05D008086 1.9e-48 197.2 167 57.5
Ca_04162_v3 Cicer arietinum L. HOM05D006505 ORTHO05D008086 3.3e-48 196.4 171 55.0
CSS0043282 Camellia sinensis var. sinensis HOM05D006505 ORTHO05D008086 4.3e-48 196.1 197 55.8
MD10G1029200 Malus domestica HOM05D006505 ORTHO05D008086 4.3e-48 196.1 174 56.9
Prupe.8G075800 Prunus persica HOM05D006505 ORTHO05D008086 4.3e-48 196.1 209 52.2
TPR.G1934 Trifolium pratense HOM05D002510 ORTHO05D006928 5.6e-48 195.7 160 57.5
Glyma.16G202700 Glycine max HOM05D006505 ORTHO05D008086 7.3e-48 195.3 162 58.0
ClCG10G009230 Citrullus lanatus HOM05D006505 ORTHO05D008086 1.6e-47 194.1 164 57.9
Psat5g300640 Pisum sativum HOM05D006505 ORTHO05D008086 2.1e-47 193.7 216 47.7
Lj2g0010245 Lotus japonicus HOM05D006505 ORTHO05D008086 2.8e-47 193.4 156 58.3
Medtr2g103160 Medicago truncatula HOM05D006505 ORTHO05D008086 4.8e-47 192.6 171 54.4
Duzib177G0740 Durio zibethinus HOM05D006505 ORTHO05D008086 1.1e-46 191.4 179 58.7
RcHm_v2.0_Chr7g0213441 Rosa chinensis HOM05D006505 ORTHO05D008086 1.4e-46 191.0 160 58.1
VMungo0464G0461 Vigna mungo HOM05D006505 ORTHO05D008086 1.4e-46 191.0 167 58.7
CANSAT01G1182 Cannabis sativa HOM05D006505 ORTHO05D008086 1.8e-46 190.7 154 61.7
vmacro00059 Vaccinium macrocarpon HOM05D006505 ORTHO05D008086 1.8e-46 190.7 151 64.2
Eucgr.D02590 Eucalyptus grandis HOM05D006505 ORTHO05D008086 2.4e-46 190.3 177 54.2
MELO3C019016.2 Cucumis melo HOM05D006505 ORTHO05D008086 6.9e-46 188.7 162 58.0
Manes.13G075298 Manihot esculenta HOM05D006505 ORTHO05D008086 1.2e-45 188.0 207 51.7
MSTRG.25731 Avicennia marina HOM05D006505 ORTHO05D008086 2.6e-45 186.8 179 54.2
Thecc.05G317100 Theobroma cacao HOM05D006505 ORTHO05D008086 2.6e-45 186.8 204 50.5
Hund04368 Selenicereus undatus HOM05D000185 ORTHO05D008086 3.4e-45 186.4 159 55.3
MD05G1028600 Malus domestica HOM05D006505 ORTHO05D008086 4.5e-45 186.0 157 58.0
CsaV3_4G009410 Cucumis sativus L. HOM05D006505 ORTHO05D008086 1.3e-44 184.5 159 59.1
Hund04411 Selenicereus undatus HOM05D006505 ORTHO05D008086 1.3e-44 184.5 159 54.7
Phvul.004G125700 Phaseolus vulgaris HOM05D006505 ORTHO05D008086 3.8e-44 183.0 167 56.3
Phvul.007G023100 Phaseolus vulgaris HOM05D006505 ORTHO05D008086 3.8e-44 183.0 170 56.5
FAN13G1156 Fragaria x ananassa HOM05D005388 ORTHO05D006281 1.1e-43 181.4 190 50.0
FAN18G0596 Fragaria x ananassa HOM05D005388 ORTHO05D006281 1.1e-43 181.4 190 50.0
Manes.09G083900 Manihot esculenta HOM05D006505 ORTHO05D008086 1.4e-43 181.0 193 51.3
Sc03g0004060 Simmondsia chinensis HOM05D006505 ORTHO05D008086 1.4e-43 181.0 172 51.2
arahy.Tifrunner.gnm1.ann1.XVHH14 Arachis hypogaea HOM05D006505 ORTHO05D008086 1.9e-43 180.6 159 56.6
arahy.Tifrunner.gnm1.ann1.P5KSQZ Arachis hypogaea HOM05D006505 ORTHO05D008086 4.2e-43 179.5 159 56.0
arahy.Tifrunner.gnm1.ann1.VH9XRT Arachis hypogaea HOM05D006505 ORTHO05D008086 7.1e-43 178.7 159 56.0
Lsat_1_v5_gn_5_56361 Lactuca sativa HOM05D006505 ORTHO05D008086 7.1e-43 178.7 126 69.0
Lsat_1_v5_gn_3_68661 Lactuca sativa HOM05D006505 ORTHO05D008086 9.3e-43 178.3 126 69.0
PGR031G3837 Punica granatum HOM05D006505 ORTHO05D008086 9.3e-43 178.3 187 53.5
FAN08G1835 Fragaria x ananassa HOM05D005388 ORTHO05D006281 2.1e-42 177.2 157 54.1
Oeu059435.1 Olea europaea HOM05D006505 ORTHO05D008086 2.7e-42 176.8 181 53.6
COL.COLO4_03796 Corchorus olitorius HOM05D006505 ORTHO05D008086 3.5e-42 176.4 163 56.4
AUR62014209 Chenopodium quinoa HOM05D006505 ORTHO05D008086 4.6e-42 176.0 159 53.5
HanXRQChr10g0282371 Helianthus annuus HOM05D006505 ORTHO05D008086 6.0e-42 175.6 132 64.4
Nitab4.5_0013752g0010 Nicotiana tabacum HOM05D006505 ORTHO05D008086 7.9e-42 175.3 161 55.9
Nitab4.5_0000009g0140 Nicotiana tabacum HOM05D006505 ORTHO05D008086 1.3e-41 174.5 158 56.3
Cc11_g05460 Coffea canephora HOM05D006505 ORTHO05D008086 1.8e-41 174.1 158 59.5
Nitab4.5_0000030g0150 Nicotiana tabacum HOM05D006505 ORTHO05D008086 1.8e-41 174.1 161 55.3
Solyc08g075720.3 Solanum lycopersicum HOM05D006505 ORTHO05D008086 3.0e-41 173.3 160 56.2
EL10Ac7g17956 Beta vulgaris HOM05D006505 ORTHO05D008086 5.1e-41 172.6 166 53.6
PGSC0003DMG400030869 Solanum tuberosum HOM05D006505 ORTHO05D008086 5.1e-41 172.6 194 49.5
EL10Ac1g01458 Beta vulgaris HOM05D006505 ORTHO05D008086 6.7e-41 172.2 167 52.1
Sopen08g024370 Solanum pennellii HOM05D006505 ORTHO05D008086 8.7e-41 171.8 194 49.5
CAN.G900.13 Capsicum annuum HOM05D006505 ORTHO05D008086 1.1e-40 171.4 160 54.4
Nitab4.5_0002941g0010 Nicotiana tabacum HOM05D006505 ORTHO05D008086 1.5e-40 171.0 161 54.7
Sed0012178 Sechium edule HOM05D006505 ORTHO05D008086 2.5e-40 170.2 121 65.3
AUR62038510 Chenopodium quinoa HOM05D006505 ORTHO05D008086 4.3e-40 169.5 164 51.8
Cpa.g.sc48.17 Carica papaya HOM05D006505 ORTHO05D008086 9.6e-40 168.3 160 58.8
Gohir.D08G224600 Gossypium hirsutum HOM05D006505 ORTHO05D008086 1.4e-38 164.5 163 52.8
SGA_v2.0_scaffold89G27392 Striga asiatica HOM05D006505 ORTHO05D008086 1.8e-38 164.1 127 63.8
Migut.A00568 Erythranthe guttata HOM05D006505 ORTHO05D008086 3.1e-38 163.3 153 54.2
unitig_0.g2835 Utricularia gibba HOM05D006505 ORTHO05D008086 5.3e-38 162.5 132 60.6
Gorai.004G238500 Gossypium raimondii HOM05D006505 ORTHO05D008086 6.9e-38 162.2 163 52.1
SalBow4G2740 Salvia bowleyana HOM05D006505 ORTHO05D008086 1.2e-37 161.4 183 48.6
Gohir.A08G207900 Gossypium hirsutum HOM05D006505 ORTHO05D008086 4.5e-37 159.5 195 46.2
BcaC05g27958 Brassica carinata HOM05D004130 ORTHO05D004705 7.6e-37 158.7 80 97.5
Ah.03g147810 Amaranthus hybridus HOM05D006505 ORTHO05D008086 6.5e-36 155.6 153 49.0
Potri.007G117700 Populus trichocarpa HOM05D006505 ORTHO05D008086 7.1e-35 152.1 167 52.1
SGA_v2.0_scaffold96G29075 Striga asiatica HOM05D006505 ORTHO05D008086 6.0e-34 149.1 139 55.4
Actinidia01261 Actinidia chinensis HOM05D006505 ORTHO05D008086 2.4e-30 137.1 139 51.8
Nn1g10029 Nelumbo nucifera HOM05D006505 ORTHO05D008086 4.1e-30 136.3 181 41.4
Nn1g10155 Nelumbo nucifera HOM05D006505 ORTHO05D008086 4.1e-30 136.3 181 41.4
Peaxi162Scf00193g00002 Petunia axillaris HOM05D006505 ORTHO05D008086 5.3e-30 136.0 138 52.2
Os03g0385900 Oryza sativa ssp. japonica HOM05D006505 ORTHO05D008086 1.7e-28 131.0 137 47.4
BolSC83t61262H Brassica oleracea HOM05D006505 ORTHO05D008086 3.8e-28 129.8 227 44.1
ECA240G0490 Erigeron canadensis HOM05D006505 ORTHO05D008086 5.0e-28 129.4 110 61.8
GSVIVG01031638001 Vitis vinifera HOM05D006505 ORTHO05D008086 8.4e-28 128.6 93 62.4
Zm00001eb342930 Zea mays HOM05D006505 ORTHO05D008086 9.3e-27 125.2 121 50.4
Aqoxy1G02002 Aquilegia oxysepala HOM05D006505 ORTHO05D008086 1.8e-25 120.9 123 48.8
Rhsim11G0030300 Rhododendron simsii HOM05D001695 ORTHO05D008931 6.9e-22 109.0 93 57.0
Rhsim01G0291600 Rhododendron simsii HOM05D006505 ORTHO05D008086 7.2e-19 99.0 119 45.4
CDE02G2054 Ceratophyllum demersum HOM05D006505 ORTHO05D008086 9.4e-19 98.6 90 50.0
Nn1g10037 Nelumbo nucifera HOM05D006505 ORTHO05D008086 1.2e-18 98.2 95 50.5
A05p25490 Brassica napus HOM05D006505 ORTHO05D008086 4.3e-16 89.7 46 93.5
Dinv41818 Davidia involucrata HOM05D001955 ORTHO05D001917 9.7e-16 88.6 169 36.7
BraA05t21433Z Brassica rapa HOM05D006505 ORTHO05D008086 8.2e-15 85.5 49 87.8
TAR636G3390 Trochodendron aralioides HOM05D006505 ORTHO05D008086 2.0e-13 80.9 106 37.7
Actinidia32777 Actinidia chinensis HOM05D006505 ORTHO05D008086 4.5e-13 79.7 85 50.6
AagrBONN_evm.TU.Sc2ySwM_340.30 Anthoceros agrestis HOM05D000964 ORTHO05D003870 1.7e-12 77.8 134 35.8
MBI05_g23315_MAGBIO Magnolia biondii HOM05D006505 ORTHO05D008086 2.5e-11 73.9 69 53.6
CAN.G601.5 Capsicum annuum HOM05D006505 ORTHO05D008086 6.7e-09 65.9 93 44.1
PSO648G0043 Papaver somniferum HOM05D006505 ORTHO05D008086 7.4e-08 62.4 74 44.6
Cre06.g288400 Chlamydomonas reinhardtii HOM05D000964 ORTHO05D003870 9.7e-08 62.0 121 35.5
PSO339G5687 Papaver somniferum HOM05D006505 ORTHO05D008086 9.7e-08 62.0 74 43.2
Sed0026211 Sechium edule HOM05D006505 ORTHO05D008086 1.3e-07 61.6 104 40.4
Medtr3g108030 Medicago truncatula HOM05D000964 ORTHO05D003870 4.8e-07 59.7 121 36.4
Psat5g206520 Pisum sativum HOM05D000964 ORTHO05D003870 6.3e-07 59.3 142 33.1
arahy.Tifrunner.gnm1.ann1.U4I6QC Arachis hypogaea HOM05D000964 ORTHO05D003870 1.1e-06 58.5 121 34.7
Nitab4.5_0020737g0010 Nicotiana tabacum HOM05D000964 ORTHO05D003870 1.1e-06 58.5 121 34.7
CAN.G1595.3 Capsicum annuum HOM05D000964 ORTHO05D003870 1.8e-06 57.8 121 33.9
HanXRQChr06g0180681 Helianthus annuus HOM05D000964 ORTHO05D003870 1.8e-06 57.8 121 33.9
Solyc00g500030.1 Solanum lycopersicum HOM05D000964 ORTHO05D003870 1.8e-06 57.8 121 33.9
Solyc00g500075.1 Solanum lycopersicum HOM05D000964 ORTHO05D003870 1.8e-06 57.8 121 33.9
DCAR_032518 Daucus carota HOM05D000964 ORTHO05D003870 2.4e-06 57.4 121 33.9
Gohir.A05G326932 Gossypium hirsutum HOM05D000964 ORTHO05D003870 2.4e-06 57.4 121 34.7
PSO384G0602 Papaver somniferum HOM05D006505 ORTHO05D008086 2.4e-06 57.4 74 41.9
VMungo0783G0001 Vigna mungo HOM05D000964 ORTHO05D003870 3.1e-06 57.0 121 33.9
ATR0306G003 Amborella trichopoda HOM05D000964 ORTHO05D003870 4.1e-06 56.6 121 35.5
HanXRQChr00c0557g0575741 Helianthus annuus HOM05D000964 ORTHO05D003870 4.1e-06 56.6 121 33.9
HanXRQChr01g0020231 Helianthus annuus HOM05D000964 ORTHO05D003870 4.1e-06 56.6 121 33.9
HanXRQChr04g0127501 Helianthus annuus HOM05D000964 ORTHO05D003870 4.1e-06 56.6 121 33.9
HanXRQChr10g0284371 Helianthus annuus HOM05D000964 ORTHO05D003870 4.1e-06 56.6 121 33.9
HanXRQChr10g0318071 Helianthus annuus HOM05D000964 ORTHO05D003870 4.1e-06 56.6 121 33.9
HanXRQChr11g0326951 Helianthus annuus HOM05D000964 ORTHO05D003870 4.1e-06 56.6 121 33.9
HanXRQCPg0580171 Helianthus annuus HOM05D000964 ORTHO05D003870 4.1e-06 56.6 121 33.9
EL10Ac4g07916 Beta vulgaris HOM05D000964 ORTHO05D003870 5.3e-06 56.2 121 35.5
MELO3C001187.2 Cucumis melo HOM05D000964 ORTHO05D003870 5.3e-06 56.2 121 35.5
HanXRQChr10g0303901 Helianthus annuus HOM05D000964 ORTHO05D003870 5.3e-06 56.2 120 33.3
AL2G20570 Arabidopsis lyrata HOM05D000964 ORTHO05D003870 7.0e-06 55.8 121 33.9
ATCG00750 Arabidopsis thaliana HOM05D000964 ORTHO05D003870 7.0e-06 55.8 121 33.9
BcaNung05008 Brassica carinata HOM05D000964 ORTHO05D003870 7.0e-06 55.8 121 33.9
BNapus_Darmor_BZH_scaffold_253p00340 Brassica napus HOM05D000964 ORTHO05D003870 7.0e-06 55.8 121 33.9
BolSC29t60527H Brassica oleracea HOM05D000964 ORTHO05D003870 7.0e-06 55.8 121 33.9
BolSC29t60608H Brassica oleracea HOM05D000964 ORTHO05D003870 7.0e-06 55.8 121 33.9
BolSC35t60668H Brassica oleracea HOM05D000964 ORTHO05D003870 7.0e-06 55.8 121 33.9
BolSC35t60731H Brassica oleracea HOM05D000964 ORTHO05D003870 7.0e-06 55.8 121 33.9
BraSC138t45555Z Brassica rapa HOM05D000964 ORTHO05D003870 7.0e-06 55.8 121 33.9
BraSC59t46572Z Brassica rapa HOM05D000964 ORTHO05D003870 7.0e-06 55.8 121 33.9
CARHR282240 Cardamine hirsuta HOM05D000964 ORTHO05D003870 7.0e-06 55.8 121 33.9
FvH4_c3g00200 Fragaria vesca HOM05D000964 ORTHO05D003870 7.0e-06 55.8 121 34.7
Gohir.1Z050234 Gossypium hirsutum HOM05D000964 ORTHO05D003870 7.0e-06 55.8 121 34.7
QL93p1043_0021 Quercus lobata HOM05D000964 ORTHO05D003870 7.0e-06 55.8 120 35.0


User provided reference genes

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