Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB07g32690 Brassica carinata HOM05D004315 ORTHO05D005089 5.2e-204 714.1 356 100.0
A09p35900 Brassica napus HOM05D004315 ORTHO05D005089 8.3e-194 680.2 356 95.2
BraA09t39115Z Brassica rapa HOM05D004315 ORTHO05D005089 2.7e-192 675.2 356 94.7
BolC5t31687H Brassica oleracea HOM05D004315 ORTHO05D005089 3.5e-192 674.9 356 94.1
C05p29560 Brassica napus HOM05D004315 ORTHO05D005089 4.5e-192 674.5 356 93.8
BcaC05g27075 Brassica carinata HOM05D004315 ORTHO05D005089 1.6e-189 666.0 356 93.8
BcaB07g32692 Brassica carinata HOM05D004315 ORTHO05D005089 1.2e-184 649.8 361 93.4
AT1G30540 Arabidopsis thaliana HOM05D004315 ORTHO05D005089 3.6e-181 638.3 351 91.2
AL1G44580 Arabidopsis lyrata HOM05D004315 ORTHO05D005089 1.4e-180 636.3 351 91.2
CARHR029950 Cardamine hirsuta HOM05D004315 ORTHO05D005089 4.0e-180 634.8 349 90.5
Sp1g26410 Schrenkiella parvula HOM05D004315 ORTHO05D005089 2.9e-178 628.6 362 89.2
Thhalv10008046m.g Eutrema salsugineum HOM05D004315 ORTHO05D005089 1.9e-177 625.9 354 89.0
Carub.0001s2880 Capsella rubella HOM05D004315 ORTHO05D005089 3.9e-175 618.2 349 88.8
BcaB07g32666 Brassica carinata HOM05D004315 ORTHO05D005089 2.3e-167 592.4 356 86.8
Aa31LG10G6590 Aethionema arabicum HOM05D004315 ORTHO05D005089 1.1e-158 563.5 364 79.4
THA.LOC104798598 Tarenaya hassleriana HOM05D004315 ORTHO05D005089 4.9e-154 548.1 393 73.3
Cpa.g.sc1123.2 Carica papaya HOM05D004315 ORTHO05D005089 1.1e-145 520.4 334 77.2
Potri.001G466900 Populus trichocarpa HOM05D004315 ORTHO05D005089 2.1e-144 516.2 347 74.6
Potri.011G164500 Populus trichocarpa HOM05D004315 ORTHO05D005089 7.3e-142 507.7 347 74.1
Cfa000809 Carpinus fangiana HOM05D004315 ORTHO05D005089 4.8e-141 505.0 350 72.3
TAR629G1010 Trochodendron aralioides HOM05D004315 ORTHO05D005089 6.9e-140 501.1 326 74.2
Sabra16G0316700 Salix brachista HOM05D004315 ORTHO05D005089 4.5e-139 498.4 370 69.5
GSVIVG01020802001 Vitis vinifera HOM05D004315 ORTHO05D005089 6.4e-138 494.6 323 74.6
Dinv05044 Davidia involucrata HOM05D004315 ORTHO05D005089 1.1e-137 493.8 323 74.9
MD17G1131300 Malus domestica HOM05D004315 ORTHO05D005089 1.1e-137 493.8 320 74.1
CiPaw.10G109400 Carya illinoinensis HOM05D004315 ORTHO05D005089 1.4e-137 493.4 338 71.9
Gohir.A05G380500 Gossypium hirsutum HOM05D004315 ORTHO05D005089 1.4e-137 493.4 318 75.2
MD09G1144800 Malus domestica HOM05D004315 ORTHO05D005089 1.9e-137 493.0 344 70.6
Duzib264G0097 Durio zibethinus HOM05D004315 ORTHO05D005089 3.2e-137 492.3 318 74.8
Gorai.012G039600 Gossypium raimondii HOM05D004315 ORTHO05D005089 5.4e-137 491.5 318 74.8
Thecc.01G165100 Theobroma cacao HOM05D004315 ORTHO05D005089 5.4e-137 491.5 320 74.7
vmacro03380 Vaccinium macrocarpon HOM05D004315 ORTHO05D005089 1.2e-136 490.3 348 71.0
Potri.014G143500 Populus trichocarpa HOM05D004315 ORTHO05D005089 1.6e-136 490.0 320 72.8
RcHm_v2.0_Chr2g0152961 Rosa chinensis HOM05D004315 ORTHO05D005089 4.6e-136 488.4 320 73.8
Sabra11G0140700 Salix brachista HOM05D004315 ORTHO05D005089 4.6e-136 488.4 383 67.1
CSS0039894 Camellia sinensis var. sinensis HOM05D004315 ORTHO05D005089 6.0e-136 488.0 351 68.9
ClCG07G010830 Citrullus lanatus HOM05D004315 ORTHO05D005089 7.9e-136 487.6 349 70.5
Prupe.3G183100 Prunus persica HOM05D004315 ORTHO05D005089 1.0e-135 487.3 324 73.5
CANSAT35G0713 Cannabis sativa HOM05D004315 ORTHO05D005089 2.3e-135 486.1 343 71.1
PSO675G7088 Papaver somniferum HOM05D004315 ORTHO05D005089 2.3e-135 486.1 348 68.7
Lj2A329G54 Lonicera japonica HOM05D004315 ORTHO05D005089 3.9e-135 485.3 334 71.9
MBI18_g11296_MAGBIO Magnolia biondii HOM05D004315 ORTHO05D005089 3.9e-135 485.3 325 73.2
Eucgr.A00888 Eucalyptus grandis HOM05D004315 ORTHO05D005089 6.7e-135 484.6 324 72.5
ATR0165G021 Amborella trichopoda HOM05D004315 ORTHO05D005089 8.7e-135 484.2 323 72.4
Oeu015176.1 Olea europaea HOM05D004315 ORTHO05D005089 1.5e-134 483.4 331 71.6
SalBow8G0183 Salvia bowleyana HOM05D004315 ORTHO05D005089 1.5e-134 483.4 331 71.3
MBI02_g32064_MAGBIO Magnolia biondii HOM05D004315 ORTHO05D005089 1.9e-134 483.0 319 73.4
Nn3g20219 Nelumbo nucifera HOM05D004315 ORTHO05D005089 1.9e-134 483.0 322 73.9
TWI14G0586 Tripterygium wilfordii HOM05D004315 ORTHO05D005089 1.9e-134 483.0 320 72.8
MSTRG.16294 Avicennia marina HOM05D004315 ORTHO05D005089 2.5e-134 482.6 331 71.9
FAN05G3231 Fragaria x ananassa HOM05D004315 ORTHO05D005089 3.3e-134 482.3 320 72.8
Ciclev10031991m.g Citrus clementina HOM05D004315 ORTHO05D005089 5.6e-134 481.5 329 72.3
TWI59G1372 Tripterygium wilfordii HOM05D004315 ORTHO05D005089 5.6e-134 481.5 320 72.2
CiPaw.03G190700 Carya illinoinensis HOM05D004315 ORTHO05D005089 9.6e-134 480.7 344 69.2
FvH4_6g39150 Fragaria vesca HOM05D004315 ORTHO05D005089 9.6e-134 480.7 320 72.5
FAN14G1093 Fragaria x ananassa HOM05D004315 ORTHO05D005089 9.6e-134 480.7 320 72.5
Aqoxy1G01576 Aquilegia oxysepala HOM05D004315 ORTHO05D005089 1.3e-133 480.3 331 71.3
PGR031G0720 Punica granatum HOM05D004315 ORTHO05D005089 1.6e-133 479.9 349 69.3
TPR.G24734 Trifolium pratense HOM05D004315 ORTHO05D005089 2.8e-133 479.2 351 67.2
Rhsim13G0121900 Rhododendron simsii HOM05D004315 ORTHO05D005089 1.4e-132 476.9 376 66.2
CSS0023242 Camellia sinensis var. sinensis HOM05D004315 ORTHO05D005089 1.8e-132 476.5 355 68.7
Migut.M01899 Erythranthe guttata HOM05D004315 ORTHO05D005089 2.4e-132 476.1 342 69.3
CANSAT64G0449 Cannabis sativa HOM05D004315 ORTHO05D005089 4.0e-132 475.3 319 72.7
Glyma.02G281300 Glycine max HOM05D004315 ORTHO05D005089 4.0e-132 475.3 345 67.5
Oeu041105.1 Olea europaea HOM05D004315 ORTHO05D005089 6.9e-132 474.6 324 71.3
GSVIVG01021661001 Vitis vinifera HOM05D004315 ORTHO05D005089 1.2e-131 473.8 350 68.3
Psat2g018080 Pisum sativum HOM05D004315 ORTHO05D005089 2.6e-131 472.6 321 71.3
Hma1.2p1_0583F.1_g183050 Hydrangea macrophylla HOM05D004315 ORTHO05D005089 1.7e-130 469.9 320 71.6
arahy.Tifrunner.gnm1.ann1.8V1VF7 Arachis hypogaea HOM05D004315 ORTHO05D005089 2.2e-130 469.5 345 67.2
DCAR_013332 Daucus carota HOM05D004315 ORTHO05D005089 2.9e-130 469.2 325 70.5
MELO3C016194.2 Cucumis melo HOM05D004315 ORTHO05D005089 3.8e-130 468.8 350 68.3
Medtr5g090130 Medicago truncatula HOM05D004315 ORTHO05D005089 4.9e-130 468.4 322 71.7
Nitab4.5_0000076g0250 Nicotiana tabacum HOM05D004315 ORTHO05D005089 4.9e-130 468.4 333 69.4
Sabra14G0108500 Salix brachista HOM05D004315 ORTHO05D005089 8.4e-130 467.6 335 68.4
Gohir.D04G035100 Gossypium hirsutum HOM05D004315 ORTHO05D005089 1.1e-129 467.2 305 73.8
Cc09_g07890 Coffea canephora HOM05D004315 ORTHO05D005089 1.4e-129 466.8 320 70.9
Dinv10789 Davidia involucrata HOM05D004315 ORTHO05D005089 2.5e-129 466.1 316 73.4
Lsat_1_v5_gn_1_91760 Lactuca sativa HOM05D004315 ORTHO05D005089 9.3e-129 464.2 346 66.5
CsaV3_4G007480 Cucumis sativus L. HOM05D004315 ORTHO05D005089 1.2e-128 463.8 350 66.6
PSO541G6471 Papaver somniferum HOM05D004315 ORTHO05D005089 2.1e-128 463.0 333 67.6
Nitab4.5_0001843g0170 Nicotiana tabacum HOM05D004315 ORTHO05D005089 2.7e-128 462.6 350 66.3
Solyc02g023980.3 Solanum lycopersicum HOM05D004315 ORTHO05D005089 3.5e-128 462.2 322 69.9
LjContig00049g0028236 Lotus japonicus HOM05D004315 ORTHO05D005089 6.0e-128 461.5 325 68.6
CDE05G3605 Ceratophyllum demersum HOM05D003391 ORTHO05D005563 7.9e-128 461.1 344 67.2
Solyc07g044750.3 Solanum lycopersicum HOM05D004315 ORTHO05D005089 7.9e-128 461.1 351 66.7
HanXRQChr01g0023901 Helianthus annuus HOM05D004315 ORTHO05D005089 1.0e-127 460.7 325 70.2
Sopen07g023340 Solanum pennellii HOM05D004315 ORTHO05D005089 1.0e-127 460.7 350 66.9
CAN.G304.4 Capsicum annuum HOM05D004315 ORTHO05D005089 1.8e-127 459.9 322 70.5
Atru.chr10.841 Acer truncatum HOM05D004315 ORTHO05D005089 2.3e-127 459.5 330 70.3
Cc05_g00540 Coffea canephora HOM05D004315 ORTHO05D005089 2.3e-127 459.5 358 65.6
arahy.Tifrunner.gnm1.ann1.VQL6P1 Arachis hypogaea HOM05D004315 ORTHO05D005089 3.0e-127 459.1 352 65.6
COL.COLO4_29897 Corchorus olitorius HOM05D004315 ORTHO05D005089 3.0e-127 459.1 302 74.2
MELO3C026388.2 Cucumis melo HOM05D004315 ORTHO05D005089 3.9e-127 458.8 327 69.1
Lalb_Chr10g0106401 Lupinus albus HOM05D004315 ORTHO05D005089 3.9e-127 458.8 321 68.8
Oeu044867.2 Olea europaea HOM05D004315 ORTHO05D005089 6.7e-127 458.0 338 68.0
CAN.G1316.2 Capsicum annuum HOM05D004315 ORTHO05D005089 8.7e-127 457.6 329 69.3
ECA248G0068 Erigeron canadensis HOM05D004315 ORTHO05D005089 8.7e-127 457.6 328 70.7
Peaxi162Scf00351g00818 Petunia axillaris HOM05D004315 ORTHO05D005089 1.5e-126 456.8 320 69.7
Lsat_1_v5_gn_2_30700 Lactuca sativa HOM05D004315 ORTHO05D005089 2.5e-126 456.1 330 69.1
PGSC0003DMG400021156 Solanum tuberosum HOM05D004315 ORTHO05D005089 9.6e-126 454.1 358 65.1
SGA_v2.0_scaffold223G42867 Striga asiatica HOM05D004315 ORTHO05D005089 4.8e-125 451.8 369 62.1
Sed0001791 Sechium edule HOM05D004315 ORTHO05D005089 1.4e-124 450.3 326 68.7
HanXRQChr14g0432981 Helianthus annuus HOM05D004315 ORTHO05D005089 1.8e-124 449.9 320 68.8
Phvul.008G199600 Phaseolus vulgaris HOM05D004315 ORTHO05D005089 2.4e-124 449.5 321 68.5
HanXRQChr04g0115031 Helianthus annuus HOM05D004315 ORTHO05D005089 3.1e-124 449.1 330 67.6
Nitab4.5_0011274g0010 Nicotiana tabacum HOM05D004315 ORTHO05D005089 4.1e-124 448.7 319 69.3
Migut.H01268 Erythranthe guttata HOM05D004315 ORTHO05D005089 9.0e-124 447.6 320 67.8
VMungo0647G0619 Vigna mungo HOM05D004315 ORTHO05D005089 4.5e-123 445.3 322 67.1
Peaxi162Scf00395g00318 Petunia axillaris HOM05D004315 ORTHO05D005089 5.8e-123 444.9 319 69.3
DCAR_007839 Daucus carota HOM05D004315 ORTHO05D005089 7.6e-123 444.5 334 67.4
unitig_37.g12072 Utricularia gibba HOM05D004315 ORTHO05D005089 3.2e-121 439.1 329 66.3
Ah.09g232250 Amaranthus hybridus HOM05D004315 ORTHO05D005089 5.5e-121 438.3 341 65.1
PGSC0003DMG401028079 Solanum tuberosum HOM05D004315 ORTHO05D005089 5.5e-121 438.3 308 69.2
Nitab4.5_0006724g0010 Nicotiana tabacum HOM05D004315 ORTHO05D005089 1.2e-120 437.2 331 65.3
HPP92_005880 Vanilla planifolia HOM05D004315 ORTHO05D005089 2.1e-120 436.4 347 64.8
SEGI_10868 Sequoiadendron giganteum HOM05D004315 ORTHO05D005089 1.0e-119 434.1 320 67.8
Zm00001eb261810 Zea mays HOM05D004315 ORTHO05D005089 1.8e-119 433.3 331 65.9
Os09g0133700 Oryza sativa ssp. japonica HOM05D004315 ORTHO05D005089 3.0e-119 432.6 333 65.8
ClCG11G016660 Citrullus lanatus HOM05D004315 ORTHO05D005089 3.9e-119 432.2 382 59.2
Zm00001eb299940 Zea mays HOM05D004315 ORTHO05D005089 6.7e-119 431.4 326 66.0
Os07g0147700 Oryza sativa ssp. japonica HOM05D004315 ORTHO05D005089 2.8e-117 426.0 328 65.2
Lj1A584G30 Lonicera japonica HOM05D004315 ORTHO05D005089 3.1e-116 422.5 342 62.6
Actinidia12522 Actinidia chinensis HOM05D004315 ORTHO05D005089 1.6e-112 410.2 326 63.8
SHI10516 Sapria himalayana HOM05D004315 ORTHO05D005089 4.6e-112 408.7 306 65.0
QL05p061983 Quercus lobata HOM05D004315 ORTHO05D005089 7.4e-110 401.4 534 44.9
Manes.02G090600 Manihot esculenta HOM05D004315 ORTHO05D005089 2.2e-109 399.8 261 74.7
Duzib147G0966 Durio zibethinus HOM05D004315 ORTHO05D005089 6.3e-109 398.3 318 62.6
Sed0020733 Sechium edule HOM05D004315 ORTHO05D005089 7.2e-105 384.8 267 71.9
Atru.chr6.2011 Acer truncatum HOM05D004315 ORTHO05D005089 1.6e-104 383.6 254 72.8
Glyma.14G033300 Glycine max HOM05D004315 ORTHO05D005089 2.2e-101 373.2 268 68.7
CsaV3_4G032170 Cucumis sativus L. HOM05D004315 ORTHO05D005089 3.5e-99 365.9 327 57.8
Mapoly0122s0046 Marchantia polymorpha HOM05D004315 ORTHO05D005089 1.7e-90 337.0 318 55.0
Hma1.2p1_0067F.1_g036960 Hydrangea macrophylla HOM05D004315 ORTHO05D005089 2.9e-90 336.3 207 76.8
Manes.14G123700 Manihot esculenta HOM05D004315 ORTHO05D005089 3.8e-90 335.9 233 69.1
Haze_05864 Corylus avellana HOM05D004315 ORTHO05D005089 1.9e-89 333.6 275 63.3
Lsat_1_v5_gn_1_77721 Lactuca sativa HOM05D004315 ORTHO05D005089 5.5e-89 332.0 222 73.0
SMO334G0132 Selaginella moellendorffii HOM05D004315 ORTHO05D005089 7.2e-89 331.6 323 52.6
Actinidia01578 Actinidia chinensis HOM05D004315 ORTHO05D005089 5.4e-84 315.5 217 71.0
Haze_05859 Corylus avellana HOM05D004315 ORTHO05D005089 3.5e-83 312.8 266 61.3
Sopen02g006690 Solanum pennellii HOM05D004315 ORTHO05D005089 1.0e-82 311.2 199 76.9
Pp3c17_6390 Physcomitrium patens HOM05D004315 ORTHO05D005089 1.2e-80 304.3 287 54.0
Sc10g0005420 Simmondsia chinensis HOM05D004315 ORTHO05D005089 3.0e-79 299.7 235 65.1
Haze_13622 Corylus avellana HOM05D004315 ORTHO05D005089 7.3e-73 278.5 163 82.2
CBR_g20100 Chara braunii HOM05D004315 ORTHO05D005089 1.1e-68 264.6 376 42.0
Hund21564 Selenicereus undatus HOM05D004315 ORTHO05D005089 9.8e-62 241.5 185 65.9
Cfa023542 Carpinus fangiana HOM05D004315 ORTHO05D005089 2.9e-61 240.0 184 64.7
Hund21563 Selenicereus undatus HOM05D004315 ORTHO05D005089 1.9e-57 227.3 158 71.5
QL05p062039 Quercus lobata HOM05D004315 ORTHO05D005089 5.6e-57 225.7 208 59.6
Actinidia33709 Actinidia chinensis HOM05D004315 ORTHO05D005089 7.3e-57 225.3 161 72.7
Zm00001eb058170 Zea mays HOM05D004315 ORTHO05D005089 2.7e-51 206.8 163 62.6
PRCOL_00003495 Prasinoderma coloniale HOM05D004315 ORTHO05D005089 9.5e-49 198.4 325 40.9
AagrBONN_evm.TU.Sc2ySwM_117.2193 Anthoceros agrestis HOM05D004315 ORTHO05D005089 1.8e-47 194.1 253 44.3
TPR.G1178 Trifolium pratense HOM05D003586 ORTHO05D004036 7.8e-43 178.7 189 52.4
Manes.01G131701 Manihot esculenta HOM05D004315 ORTHO05D005089 1.3e-42 177.9 120 66.7
Manes.01G131702 Manihot esculenta HOM05D004315 ORTHO05D005089 3.1e-31 140.2 107 70.1
Pp3s34_420 Physcomitrium patens HOM05D000198 ORTHO05D309562 3.1e-31 140.2 330 32.1
Cre17.g720528 Chlamydomonas reinhardtii HOM05D004315 ORTHO05D005089 1.8e-26 124.4 257 33.1
QL04p059944 Quercus lobata HOM05D004315 ORTHO05D005089 3.9e-26 123.2 67 83.6
MCO07G054 Micromonas commoda HOM05D004315 ORTHO05D005089 5.1e-26 122.9 382 30.4
SEGI_40766 Sequoiadendron giganteum HOM05D004315 ORTHO05D005089 3.3e-25 120.2 97 54.6
SEGI_21833 Sequoiadendron giganteum HOM05D004315 ORTHO05D005089 9.0e-23 112.1 128 49.2
Cfa023541 Carpinus fangiana HOM05D004315 ORTHO05D005089 5.6e-17 92.8 56 80.4
DCAR_009744 Daucus carota HOM05D004315 ORTHO05D018839 7.4e-17 92.4 84 52.4
Hma1.2p1_0067F.1_g036930 Hydrangea macrophylla HOM05D004315 ORTHO05D005089 7.4e-17 92.4 57 75.4
Atru.chr6.2012 Acer truncatum HOM05D004315 ORTHO05D005089 2.2e-13 80.9 57 70.2
Ah.03g146620 Amaranthus hybridus HOM05D004315 ORTHO05D005089 2.7e-11 73.9 59 59.3
TAR624G0620 Trochodendron aralioides HOM05D004315 ORTHO05D005089 1.3e-10 71.6 60 60.0
CDE04G1567 Ceratophyllum demersum HOM05D001307 ORTHO05D005089 4.8e-08 63.2 91 41.8


User provided reference genes

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