Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB07g32666 Brassica carinata HOM05D004315 ORTHO05D005089 3.8e-196 688.0 340 100.0
BcaB07g32692 Brassica carinata HOM05D004315 ORTHO05D005089 1.2e-170 603.2 358 88.0
BcaB07g32690 Brassica carinata HOM05D004315 ORTHO05D005089 1.7e-167 592.8 356 86.8
C05p29560 Brassica napus HOM05D004315 ORTHO05D005089 2.2e-159 565.8 357 83.2
BolC5t31687H Brassica oleracea HOM05D004315 ORTHO05D005089 2.2e-159 565.8 357 83.2
A09p35900 Brassica napus HOM05D004315 ORTHO05D005089 1.1e-158 563.5 359 82.5
BraA09t39115Z Brassica rapa HOM05D004315 ORTHO05D005089 3.5e-157 558.5 359 81.9
BcaC05g27075 Brassica carinata HOM05D004315 ORTHO05D005089 1.0e-156 557.0 357 82.9
CARHR029950 Cardamine hirsuta HOM05D004315 ORTHO05D005089 3.6e-146 521.9 354 77.4
Sp1g26410 Schrenkiella parvula HOM05D004315 ORTHO05D005089 4.7e-146 521.5 363 78.0
AT1G30540 Arabidopsis thaliana HOM05D004315 ORTHO05D005089 8.0e-146 520.8 356 77.2
Thhalv10008046m.g Eutrema salsugineum HOM05D004315 ORTHO05D005089 1.8e-145 519.6 357 77.9
AL1G44580 Arabidopsis lyrata HOM05D004315 ORTHO05D005089 3.0e-145 518.8 356 77.2
Carub.0001s2880 Capsella rubella HOM05D004315 ORTHO05D005089 6.3e-143 511.1 349 77.9
Aa31LG10G6590 Aethionema arabicum HOM05D004315 ORTHO05D005089 1.4e-129 466.8 366 70.2
THA.LOC104798598 Tarenaya hassleriana HOM05D004315 ORTHO05D005089 2.5e-123 446.0 397 63.5
Cpa.g.sc1123.2 Carica papaya HOM05D004315 ORTHO05D005089 1.4e-118 430.3 334 67.1
Potri.001G466900 Populus trichocarpa HOM05D004315 ORTHO05D005089 1.3e-116 423.7 349 65.6
Cfa000809 Carpinus fangiana HOM05D004315 ORTHO05D005089 1.6e-114 416.8 352 63.4
Potri.011G164500 Populus trichocarpa HOM05D004315 ORTHO05D005089 1.6e-114 416.8 349 65.0
CiPaw.10G109400 Carya illinoinensis HOM05D004315 ORTHO05D005089 8.9e-113 411.0 340 64.1
TAR629G1010 Trochodendron aralioides HOM05D004315 ORTHO05D005089 1.2e-112 410.6 328 64.6
vmacro03380 Vaccinium macrocarpon HOM05D004315 ORTHO05D005089 1.2e-112 410.6 348 62.9
Sabra16G0316700 Salix brachista HOM05D004315 ORTHO05D005089 2.6e-112 409.5 372 61.3
CANSAT35G0713 Cannabis sativa HOM05D004315 ORTHO05D005089 4.4e-112 408.7 344 63.7
Dinv05044 Davidia involucrata HOM05D004315 ORTHO05D005089 1.7e-111 406.8 325 65.5
Gohir.A05G380500 Gossypium hirsutum HOM05D004315 ORTHO05D005089 4.9e-111 405.2 319 65.5
ClCG07G010830 Citrullus lanatus HOM05D004315 ORTHO05D005089 6.4e-111 404.8 349 63.0
Duzib264G0097 Durio zibethinus HOM05D004315 ORTHO05D005089 1.9e-110 403.3 319 65.5
Gorai.012G039600 Gossypium raimondii HOM05D004315 ORTHO05D005089 1.9e-110 403.3 319 65.2
CSS0023242 Camellia sinensis var. sinensis HOM05D004315 ORTHO05D005089 5.4e-110 401.7 357 61.1
CSS0039894 Camellia sinensis var. sinensis HOM05D004315 ORTHO05D005089 5.4e-110 401.7 353 59.8
Thecc.01G165100 Theobroma cacao HOM05D004315 ORTHO05D005089 5.4e-110 401.7 321 65.7
Oeu015176.1 Olea europaea HOM05D004315 ORTHO05D005089 7.1e-110 401.4 333 63.1
GSVIVG01020802001 Vitis vinifera HOM05D004315 ORTHO05D005089 9.3e-110 401.0 325 64.6
MD17G1131300 Malus domestica HOM05D004315 ORTHO05D005089 3.5e-109 399.1 322 64.0
MD09G1144800 Malus domestica HOM05D004315 ORTHO05D005089 4.6e-109 398.7 346 61.3
SalBow8G0183 Salvia bowleyana HOM05D004315 ORTHO05D005089 4.6e-109 398.7 334 62.9
Eucgr.A00888 Eucalyptus grandis HOM05D004315 ORTHO05D005089 7.8e-109 397.9 326 63.2
MSTRG.16294 Avicennia marina HOM05D004315 ORTHO05D005089 1.0e-108 397.5 333 63.1
Lj2A329G54 Lonicera japonica HOM05D004315 ORTHO05D005089 1.3e-108 397.1 336 63.1
ATR0165G021 Amborella trichopoda HOM05D004315 ORTHO05D005089 1.7e-108 396.7 323 63.5
RcHm_v2.0_Chr2g0152961 Rosa chinensis HOM05D004315 ORTHO05D005089 2.3e-108 396.4 322 64.0
Sabra11G0140700 Salix brachista HOM05D004315 ORTHO05D005089 2.3e-108 396.4 385 58.7
Prupe.3G183100 Prunus persica HOM05D004315 ORTHO05D005089 3.0e-108 396.0 325 63.7
Ciclev10031991m.g Citrus clementina HOM05D004315 ORTHO05D005089 3.9e-108 395.6 330 63.3
TWI59G1372 Tripterygium wilfordii HOM05D004315 ORTHO05D005089 3.9e-108 395.6 321 62.9
MBI18_g11296_MAGBIO Magnolia biondii HOM05D004315 ORTHO05D005089 6.6e-108 394.8 325 63.7
Aqoxy1G01576 Aquilegia oxysepala HOM05D004315 ORTHO05D005089 8.7e-108 394.4 333 62.5
Rhsim13G0121900 Rhododendron simsii HOM05D004315 ORTHO05D005089 8.7e-108 394.4 378 58.7
Dinv10789 Davidia involucrata HOM05D004315 ORTHO05D005089 1.1e-107 394.0 263 73.8
PSO675G7088 Papaver somniferum HOM05D004315 ORTHO05D005089 1.1e-107 394.0 350 59.4
TWI14G0586 Tripterygium wilfordii HOM05D004315 ORTHO05D005089 1.1e-107 394.0 322 64.0
FAN05G3231 Fragaria x ananassa HOM05D004315 ORTHO05D005089 1.5e-107 393.7 320 63.8
Nn3g20219 Nelumbo nucifera HOM05D004315 ORTHO05D005089 1.5e-107 393.7 324 64.2
FvH4_6g39150 Fragaria vesca HOM05D004315 ORTHO05D005089 4.3e-107 392.1 320 63.4
FAN14G1093 Fragaria x ananassa HOM05D004315 ORTHO05D005089 4.3e-107 392.1 320 63.4
Hma1.2p1_0583F.1_g183050 Hydrangea macrophylla HOM05D004315 ORTHO05D005089 7.3e-107 391.3 321 63.9
Oeu041105.1 Olea europaea HOM05D004315 ORTHO05D005089 7.3e-107 391.3 326 62.3
Migut.M01899 Erythranthe guttata HOM05D004315 ORTHO05D005089 1.3e-106 390.6 345 61.2
Potri.014G143500 Populus trichocarpa HOM05D004315 ORTHO05D005089 1.3e-106 390.6 322 61.8
MBI02_g32064_MAGBIO Magnolia biondii HOM05D004315 ORTHO05D005089 1.6e-106 390.2 319 63.9
CiPaw.03G190700 Carya illinoinensis HOM05D004315 ORTHO05D005089 6.2e-106 388.3 348 59.5
Glyma.02G281300 Glycine max HOM05D004315 ORTHO05D005089 8.1e-106 387.9 347 58.5
CANSAT64G0449 Cannabis sativa HOM05D004315 ORTHO05D005089 1.8e-105 386.7 319 62.4
Cc09_g07890 Coffea canephora HOM05D004315 ORTHO05D005089 1.8e-105 386.7 322 62.7
Gohir.D04G035100 Gossypium hirsutum HOM05D004315 ORTHO05D005089 3.1e-105 386.0 253 73.1
arahy.Tifrunner.gnm1.ann1.8V1VF7 Arachis hypogaea HOM05D004315 ORTHO05D005089 4.0e-105 385.6 347 59.1
MELO3C016194.2 Cucumis melo HOM05D004315 ORTHO05D005089 4.0e-105 385.6 350 60.9
PGR031G0720 Punica granatum HOM05D004315 ORTHO05D005089 4.0e-105 385.6 351 60.1
Lsat_1_v5_gn_1_91760 Lactuca sativa HOM05D004315 ORTHO05D005089 9.0e-105 384.4 348 58.9
PSO541G6471 Papaver somniferum HOM05D004315 ORTHO05D005089 1.5e-104 383.6 281 66.5
GSVIVG01021661001 Vitis vinifera HOM05D004315 ORTHO05D005089 2.0e-104 383.3 352 59.7
Atru.chr10.841 Acer truncatum HOM05D004315 ORTHO05D005089 2.6e-104 382.9 277 69.7
Nitab4.5_0000076g0250 Nicotiana tabacum HOM05D004315 ORTHO05D005089 2.6e-104 382.9 333 60.1
TPR.G24734 Trifolium pratense HOM05D004315 ORTHO05D005089 2.6e-104 382.9 353 58.6
DCAR_013332 Daucus carota HOM05D004315 ORTHO05D005089 7.6e-104 381.3 327 61.5
CDE05G3605 Ceratophyllum demersum HOM05D003391 ORTHO05D005563 1.3e-103 380.6 344 59.3
CsaV3_4G007480 Cucumis sativus L. HOM05D004315 ORTHO05D005089 1.3e-103 380.6 350 59.1
ECA248G0068 Erigeron canadensis HOM05D004315 ORTHO05D005089 1.3e-103 380.6 330 62.4
Solyc02g023980.3 Solanum lycopersicum HOM05D004315 ORTHO05D005089 1.7e-103 380.2 324 61.1
Nitab4.5_0001843g0170 Nicotiana tabacum HOM05D004315 ORTHO05D005089 2.2e-103 379.8 350 59.1
MELO3C026388.2 Cucumis melo HOM05D004315 ORTHO05D005089 2.9e-103 379.4 329 61.1
CAN.G1316.2 Capsicum annuum HOM05D004315 ORTHO05D005089 4.9e-103 378.6 331 61.3
HanXRQChr01g0023901 Helianthus annuus HOM05D004315 ORTHO05D005089 1.4e-102 377.1 327 61.2
Medtr5g090130 Medicago truncatula HOM05D004315 ORTHO05D005089 1.9e-102 376.7 324 62.3
arahy.Tifrunner.gnm1.ann1.VQL6P1 Arachis hypogaea HOM05D004315 ORTHO05D005089 3.2e-102 375.9 354 57.6
CAN.G304.4 Capsicum annuum HOM05D004315 ORTHO05D005089 4.2e-102 375.6 324 61.4
Atru.chr6.2011 Acer truncatum HOM05D004315 ORTHO05D005089 5.4e-102 375.2 257 70.8
Sopen07g023340 Solanum pennellii HOM05D004315 ORTHO05D005089 5.4e-102 375.2 352 58.2
Solyc07g044750.3 Solanum lycopersicum HOM05D004315 ORTHO05D005089 9.3e-102 374.4 352 58.0
Psat2g018080 Pisum sativum HOM05D004315 ORTHO05D005089 1.2e-101 374.0 321 60.7
DCAR_007839 Daucus carota HOM05D004315 ORTHO05D005089 1.6e-101 373.6 277 69.0
Sabra14G0108500 Salix brachista HOM05D004315 ORTHO05D005089 2.1e-101 373.2 337 57.9
Cc05_g00540 Coffea canephora HOM05D004315 ORTHO05D005089 6.0e-101 371.7 360 57.2
Lalb_Chr10g0106401 Lupinus albus HOM05D004315 ORTHO05D005089 7.9e-101 371.3 321 59.5
Oeu044867.2 Olea europaea HOM05D004315 ORTHO05D005089 1.3e-100 370.5 339 58.4
Sed0001791 Sechium edule HOM05D004315 ORTHO05D005089 2.3e-100 369.8 326 61.0
Nitab4.5_0011274g0010 Nicotiana tabacum HOM05D004315 ORTHO05D005089 3.0e-100 369.4 266 67.7
LjContig00049g0028236 Lotus japonicus HOM05D004315 ORTHO05D005089 3.9e-100 369.0 329 58.4
Peaxi162Scf00351g00818 Petunia axillaris HOM05D004315 ORTHO05D005089 5.1e-100 368.6 320 61.6
PGSC0003DMG400021156 Solanum tuberosum HOM05D004315 ORTHO05D005089 6.6e-100 368.2 360 56.7
COL.COLO4_29897 Corchorus olitorius HOM05D004315 ORTHO05D005089 8.7e-100 367.9 302 64.6
SGA_v2.0_scaffold223G42867 Striga asiatica HOM05D004315 ORTHO05D005089 8.7e-100 367.9 369 54.2
Lsat_1_v5_gn_2_30700 Lactuca sativa HOM05D004315 ORTHO05D005089 1.1e-99 367.5 334 59.3
Sed0020733 Sechium edule HOM05D004315 ORTHO05D005089 1.1e-99 367.5 259 70.7
VMungo0647G0619 Vigna mungo HOM05D004315 ORTHO05D005089 1.5e-99 367.1 322 58.4
Migut.H01268 Erythranthe guttata HOM05D004315 ORTHO05D005089 5.6e-99 365.2 321 59.8
Phvul.008G199600 Phaseolus vulgaris HOM05D004315 ORTHO05D005089 1.3e-98 364.0 323 58.8
Peaxi162Scf00395g00318 Petunia axillaris HOM05D004315 ORTHO05D005089 4.8e-98 362.1 321 60.1
Nitab4.5_0006724g0010 Nicotiana tabacum HOM05D004315 ORTHO05D005089 1.1e-97 360.9 279 64.2
PGSC0003DMG401028079 Solanum tuberosum HOM05D004315 ORTHO05D005089 1.1e-97 360.9 255 67.8
HanXRQChr04g0115031 Helianthus annuus HOM05D004315 ORTHO05D005089 1.2e-96 357.5 334 57.2
HanXRQChr14g0432981 Helianthus annuus HOM05D004315 ORTHO05D005089 1.5e-96 357.1 324 58.3
SEGI_10868 Sequoiadendron giganteum HOM05D004315 ORTHO05D005089 2.6e-96 356.3 320 60.0
Ah.09g232250 Amaranthus hybridus HOM05D004315 ORTHO05D005089 5.8e-96 355.1 341 57.8
Zm00001eb299940 Zea mays HOM05D004315 ORTHO05D005089 5.8e-96 355.1 328 57.6
HPP92_005880 Vanilla planifolia HOM05D004315 ORTHO05D005089 7.6e-96 354.8 349 57.0
ClCG11G016660 Citrullus lanatus HOM05D004315 ORTHO05D005089 3.8e-95 352.4 384 52.3
Os09g0133700 Oryza sativa ssp. japonica HOM05D004315 ORTHO05D005089 3.8e-95 352.4 335 57.9
Os07g0147700 Oryza sativa ssp. japonica HOM05D004315 ORTHO05D005089 4.9e-95 352.1 330 57.9
unitig_37.g12072 Utricularia gibba HOM05D004315 ORTHO05D005089 4.9e-95 352.1 329 56.5
Zm00001eb261810 Zea mays HOM05D004315 ORTHO05D005089 9.3e-94 347.8 333 57.1
Lj1A584G30 Lonicera japonica HOM05D004315 ORTHO05D005089 6.7e-92 341.7 289 60.2
SHI10516 Sapria himalayana HOM05D004315 ORTHO05D005089 1.5e-91 340.5 253 65.6
Manes.14G123700 Manihot esculenta HOM05D004315 ORTHO05D005089 3.7e-90 335.9 233 69.1
Hma1.2p1_0067F.1_g036960 Hydrangea macrophylla HOM05D004315 ORTHO05D005089 2.0e-88 330.1 207 76.3
Actinidia12522 Actinidia chinensis HOM05D004315 ORTHO05D005089 4.5e-88 328.9 253 65.2
Actinidia01578 Actinidia chinensis HOM05D004315 ORTHO05D005089 2.3e-84 316.6 224 70.1
Manes.02G090600 Manihot esculenta HOM05D004315 ORTHO05D005089 1.3e-82 310.8 263 63.1
QL05p061983 Quercus lobata HOM05D004315 ORTHO05D005089 4.8e-82 308.9 536 39.0
Duzib147G0966 Durio zibethinus HOM05D004315 ORTHO05D005089 6.9e-81 305.1 319 52.7
Sc10g0005420 Simmondsia chinensis HOM05D004315 ORTHO05D005089 2.9e-79 299.7 235 65.1
Glyma.14G033300 Glycine max HOM05D004315 ORTHO05D005089 1.8e-76 290.4 270 57.8
CsaV3_4G032170 Cucumis sativus L. HOM05D004315 ORTHO05D005089 1.9e-75 287.0 329 50.2
Mapoly0122s0046 Marchantia polymorpha HOM05D004315 ORTHO05D005089 1.3e-71 274.2 318 49.4
SMO334G0132 Selaginella moellendorffii HOM05D004315 ORTHO05D005089 1.6e-69 267.3 327 46.8
Haze_13622 Corylus avellana HOM05D004315 ORTHO05D005089 2.6e-64 250.0 155 77.4
Haze_05864 Corylus avellana HOM05D004315 ORTHO05D005089 3.4e-64 249.6 277 52.7
Lsat_1_v5_gn_1_77721 Lactuca sativa HOM05D004315 ORTHO05D005089 3.4e-64 249.6 224 60.7
Hund21564 Selenicereus undatus HOM05D004315 ORTHO05D005089 9.4e-62 241.5 185 65.9
Cfa023542 Carpinus fangiana HOM05D004315 ORTHO05D005089 2.7e-61 240.0 184 64.7
Haze_05859 Corylus avellana HOM05D004315 ORTHO05D005089 1.1e-59 234.6 208 59.1
Pp3c17_6390 Physcomitrium patens HOM05D004315 ORTHO05D005089 1.5e-59 234.2 290 45.9
CBR_g20100 Chara braunii HOM05D004315 ORTHO05D005089 4.4e-59 232.6 373 39.7
Sopen02g006690 Solanum pennellii HOM05D004315 ORTHO05D005089 3.7e-58 229.6 201 62.7
Zm00001eb058170 Zea mays HOM05D004315 ORTHO05D005089 2.6e-51 206.8 163 62.6
AagrBONN_evm.TU.Sc2ySwM_117.2193 Anthoceros agrestis HOM05D004315 ORTHO05D005089 1.7e-47 194.1 253 44.3
Manes.01G131701 Manihot esculenta HOM05D004315 ORTHO05D005089 1.3e-42 177.9 120 66.7
PRCOL_00003495 Prasinoderma coloniale HOM05D004315 ORTHO05D005089 1.0e-39 168.3 227 46.3
Actinidia33709 Actinidia chinensis HOM05D004315 ORTHO05D005089 1.3e-34 151.4 162 56.8
QL05p062039 Quercus lobata HOM05D004315 ORTHO05D005089 1.3e-31 141.4 92 76.1
Hund21563 Selenicereus undatus HOM05D004315 ORTHO05D005089 1.7e-31 141.0 158 53.2
Pp3s34_420 Physcomitrium patens HOM05D000198 ORTHO05D309562 1.7e-26 124.4 263 33.1
QL04p059944 Quercus lobata HOM05D004315 ORTHO05D005089 3.7e-26 123.2 67 83.6
SEGI_40766 Sequoiadendron giganteum HOM05D004315 ORTHO05D005089 3.2e-25 120.2 97 54.6
MCO07G054 Micromonas commoda HOM05D004315 ORTHO05D005089 7.8e-24 115.5 285 33.3
Cre17.g720528 Chlamydomonas reinhardtii HOM05D004315 ORTHO05D005089 3.6e-21 106.7 195 33.8
TPR.G1178 Trifolium pratense HOM05D003586 ORTHO05D004036 1.5e-19 101.3 96 56.2
DCAR_009744 Daucus carota HOM05D004315 ORTHO05D018839 7.0e-17 92.4 84 52.4
Hma1.2p1_0067F.1_g036930 Hydrangea macrophylla HOM05D004315 ORTHO05D005089 7.0e-17 92.4 57 75.4
SEGI_21833 Sequoiadendron giganteum HOM05D004315 ORTHO05D005089 1.3e-15 88.2 128 42.2
Ah.03g146620 Amaranthus hybridus HOM05D004315 ORTHO05D005089 2.6e-11 73.9 59 59.3
Cfa023541 Carpinus fangiana HOM05D004315 ORTHO05D005089 2.1e-08 64.3 48 64.6
Manes.01G131702 Manihot esculenta HOM05D004315 ORTHO05D005089 3.5e-08 63.5 107 43.0
CDE04G1567 Ceratophyllum demersum HOM05D001307 ORTHO05D005089 4.6e-08 63.2 91 41.8


User provided reference genes

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