Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB07g32570 Brassica carinata HOM05D005404 ORTHO05D006623 6.3e-59 230.7 130 100.0
C05p28570 Brassica napus HOM05D005404 ORTHO05D006623 3.1e-58 228.4 130 99.2
BcaB03g13855 Brassica carinata HOM05D005404 ORTHO05D006623 1.6e-57 226.1 130 98.5
BcaC01g00143 Brassica carinata HOM05D005404 ORTHO05D006623 1.6e-57 226.1 130 98.5
Sp1g25740 Schrenkiella parvula HOM05D005404 ORTHO05D006623 3.5e-57 224.9 130 97.7
A08p24810 Brassica napus HOM05D003390 ORTHO05D004189 5.9e-57 224.2 129 98.4
BcaC06g35468 Brassica carinata HOM05D005404 ORTHO05D006623 7.7e-57 223.8 130 96.9
Thhalv10009098m.g Eutrema salsugineum HOM05D005404 ORTHO05D006623 1.0e-56 223.4 130 96.9
BolC5t31581H Brassica oleracea HOM05D005404 ORTHO05D006623 2.9e-56 221.9 130 98.5
BcaC05g26997 Brassica carinata HOM05D005404 ORTHO05D006623 5.0e-56 221.1 129 98.4
BcaB03g12183 Brassica carinata HOM05D005404 ORTHO05D006623 1.6e-54 216.1 131 95.4
CARHR029600 Cardamine hirsuta HOM05D005404 ORTHO05D006623 1.6e-54 216.1 130 93.1
A07p10200 Brassica napus HOM05D005404 ORTHO05D006623 5.7e-52 207.6 121 95.9
BolC7t42063H Brassica oleracea HOM05D005404 ORTHO05D006623 5.7e-52 207.6 122 95.1
BraA07t28813Z Brassica rapa HOM05D005404 ORTHO05D006623 9.8e-52 206.8 122 95.1
BraA08t34436Z Brassica rapa HOM05D003390 ORTHO05D004189 6.3e-51 204.1 132 91.7
BolC3t19881H Brassica oleracea HOM05D005404 ORTHO05D006623 8.3e-51 203.8 121 96.7
Thecc.06G156200 Theobroma cacao HOM05D005404 ORTHO05D006623 8.3e-51 203.8 129 88.4
Carub.0001s2809 Capsella rubella HOM05D005404 ORTHO05D006623 5.4e-50 201.1 130 90.0
PSO017G4964 Papaver somniferum HOM05D005404 ORTHO05D006623 9.2e-50 200.3 129 88.4
Duzib101G0001 Durio zibethinus HOM05D005404 ORTHO05D006623 1.2e-49 199.9 129 87.6
Duzib192G1075 Durio zibethinus HOM05D005404 ORTHO05D006623 1.2e-49 199.9 129 87.6
Duzib160G0646 Durio zibethinus HOM05D005404 ORTHO05D006623 2.7e-49 198.7 129 86.0
CANSAT35G0205 Cannabis sativa HOM05D005404 ORTHO05D006623 7.8e-49 197.2 129 87.6
PSO170G1289 Papaver somniferum HOM05D005404 ORTHO05D006623 7.8e-49 197.2 129 86.8
Hund21493 Selenicereus undatus HOM05D005404 ORTHO05D006623 1.3e-48 196.4 129 86.8
Aqoxy4G00127 Aquilegia oxysepala HOM05D005404 ORTHO05D006623 1.7e-48 196.1 128 85.9
MD16G1202800 Malus domestica HOM05D005404 ORTHO05D006623 2.3e-48 195.7 130 85.4
Duzib235G1537 Durio zibethinus HOM05D005404 ORTHO05D006623 3.9e-48 194.9 129 85.3
Prupe.4G075200 Prunus persica HOM05D005404 ORTHO05D006623 3.9e-48 194.9 130 84.6
Gohir.A10G038300 Gossypium hirsutum HOM05D005404 ORTHO05D006623 5.0e-48 194.5 129 85.3
HanXRQChr11g0340931 Helianthus annuus HOM05D005404 ORTHO05D006623 5.0e-48 194.5 129 86.0
MD05G1290500 Malus domestica HOM05D005404 ORTHO05D006623 5.0e-48 194.5 130 84.6
THA.LOC104812663 Tarenaya hassleriana HOM05D005404 ORTHO05D006623 6.6e-48 194.1 130 83.8
Ca_18287_v3 Cicer arietinum L. HOM05D005404 ORTHO05D006623 1.1e-47 193.4 129 83.7
Gohir.D10G039300 Gossypium hirsutum HOM05D005404 ORTHO05D006623 1.5e-47 193.0 129 84.5
Gorai.011G041300 Gossypium raimondii HOM05D005404 ORTHO05D006623 1.5e-47 193.0 129 84.5
TAR626G1892 Trochodendron aralioides HOM05D005404 ORTHO05D006623 2.5e-47 192.2 128 84.4
PGR042G3093 Punica granatum HOM05D005404 ORTHO05D006623 4.3e-47 191.4 129 83.7
FAN21G0592 Fragaria x ananassa HOM05D005404 ORTHO05D006623 7.3e-47 190.7 129 82.2
Lj4g0012372 Lotus japonicus HOM05D005404 ORTHO05D006623 9.5e-47 190.3 129 84.5
Medtr4g094580 Medicago truncatula HOM05D005404 ORTHO05D006623 9.5e-47 190.3 129 82.9
arahy.Tifrunner.gnm1.ann1.HITJ74 Arachis hypogaea HOM05D005404 ORTHO05D006623 1.2e-46 189.9 129 82.2
VMungo0251G2631 Vigna mungo HOM05D005404 ORTHO05D006623 2.1e-46 189.1 129 82.2
Sed0003587 Sechium edule HOM05D005404 ORTHO05D006623 2.8e-46 188.7 129 83.7
Ciclev10017167m.g Citrus clementina HOM05D005404 ORTHO05D006623 3.6e-46 188.3 130 83.8
Glyma.08G082100 Glycine max HOM05D005404 ORTHO05D006623 3.6e-46 188.3 129 82.2
DCAR_007905 Daucus carota HOM05D005404 ORTHO05D006623 6.1e-46 187.6 128 83.6
Potri.001G352600 Populus trichocarpa HOM05D005404 ORTHO05D006623 8.0e-46 187.2 129 82.9
EL10Ac8g19776 Beta vulgaris HOM05D005404 ORTHO05D006623 1.0e-45 186.8 129 82.2
MELO3C007159.2 Cucumis melo HOM05D005404 ORTHO05D006623 1.0e-45 186.8 129 82.9
CsaV3_6G051470 Cucumis sativus L. HOM05D005404 ORTHO05D006623 1.0e-45 186.8 129 82.9
Phvul.002G197500 Phaseolus vulgaris HOM05D005404 ORTHO05D006623 1.0e-45 186.8 129 82.2
Eucgr.E02375 Eucalyptus grandis HOM05D005404 ORTHO05D006623 1.4e-45 186.4 129 82.2
Glyma.05G127400 Glycine max HOM05D005404 ORTHO05D006623 5.2e-45 184.5 129 81.4
TWI53G0717 Tripterygium wilfordii HOM05D005404 ORTHO05D006623 5.2e-45 184.5 129 82.2
Peaxi162Scf00482g00049 Petunia axillaris HOM05D005404 ORTHO05D006623 3.4e-44 181.8 129 79.1
CiPaw.09G128300 Carya illinoinensis HOM05D005404 ORTHO05D006623 4.4e-44 181.4 128 82.0
Solyc02g071150.3 Solanum lycopersicum HOM05D005404 ORTHO05D006623 5.8e-44 181.0 129 79.1
Sopen02g020230 Solanum pennellii HOM05D005404 ORTHO05D006623 5.8e-44 181.0 129 79.1
AL1G43680 Arabidopsis lyrata HOM05D005404 ORTHO05D006623 3.7e-43 178.3 131 83.2
Sc05g0006520 Simmondsia chinensis HOM05D005404 ORTHO05D006623 3.7e-43 178.3 129 79.8
Os05g0547850 Oryza sativa ssp. japonica HOM05D005404 ORTHO05D006623 4.9e-43 177.9 129 79.1
COL.COLO4_07492 Corchorus olitorius HOM05D005404 ORTHO05D006623 6.4e-43 177.6 116 87.9
TAR627G1065 Trochodendron aralioides HOM05D005404 ORTHO05D006623 8.3e-43 177.2 120 85.0
SGA_v2.0_scaffold333G49013 Striga asiatica HOM05D005404 ORTHO05D006623 1.4e-42 176.4 128 77.3
Nitab4.5_0000206g0130 Nicotiana tabacum HOM05D005404 ORTHO05D006623 1.9e-42 176.0 129 77.5
ATR0681G149 Amborella trichopoda HOM05D005404 ORTHO05D006623 4.1e-42 174.9 117 86.3
Lalb_Chr12g0208831 Lupinus albus HOM05D005404 ORTHO05D006623 4.1e-42 174.9 129 78.3
Nn4g26481 Nelumbo nucifera HOM05D005404 ORTHO05D006623 4.1e-42 174.9 150 70.7
unitig_26.g10094 Utricularia gibba HOM05D005404 ORTHO05D006623 5.4e-42 174.5 129 75.2
Atru.chr10.1368 Acer truncatum HOM05D005404 ORTHO05D006623 1.2e-41 173.3 129 79.1
Migut.H01386 Erythranthe guttata HOM05D005404 ORTHO05D006623 1.2e-41 173.3 129 75.2
GSVIVG01021395001 Vitis vinifera HOM05D005404 ORTHO05D006623 4.6e-41 171.4 116 83.6
MSTRG.16208 Avicennia marina HOM05D005404 ORTHO05D006623 6.0e-41 171.0 129 73.6
FAN11G2394 Fragaria x ananassa HOM05D005404 ORTHO05D006623 1.0e-40 170.2 116 81.9
Nn3g20867 Nelumbo nucifera HOM05D005404 ORTHO05D006623 1.7e-40 169.5 130 78.5
Psat7g091480 Pisum sativum HOM05D005404 ORTHO05D006623 3.0e-40 168.7 116 81.9
Lsat_1_v5_gn_1_91580 Lactuca sativa HOM05D005404 ORTHO05D006623 3.9e-40 168.3 129 78.3
AT1G29850 Arabidopsis thaliana HOM05D005404 ORTHO05D006623 6.6e-40 167.5 130 78.5
Sabra16G0231900 Salix brachista HOM05D005404 ORTHO05D006623 6.6e-40 167.5 162 64.8
THA.LOC104814282 Tarenaya hassleriana HOM05D005404 ORTHO05D006623 1.1e-39 166.8 130 76.9
DCAR_003948 Daucus carota HOM05D005404 ORTHO05D006623 1.5e-39 166.4 116 82.8
Rhsim02G0154900 Rhododendron simsii HOM05D005404 ORTHO05D006623 3.3e-39 165.2 116 81.0
Cc00_g15980 Coffea canephora HOM05D005404 ORTHO05D006623 5.6e-39 164.5 116 80.2
Actinidia39556 Actinidia chinensis HOM05D005404 ORTHO05D006623 7.3e-39 164.1 129 76.0
QL05p060078 Quercus lobata HOM05D005404 ORTHO05D006623 1.6e-38 162.9 129 74.4
Manes.15G118100 Manihot esculenta HOM05D005404 ORTHO05D006623 2.1e-38 162.5 129 75.2
MBI07_g07833_MAGBIO Magnolia biondii HOM05D005404 ORTHO05D006623 3.6e-38 161.8 116 80.2
CDE08G1548 Ceratophyllum demersum HOM05D005404 ORTHO05D006623 8.0e-38 160.6 103 86.4
CDE02G1967 Ceratophyllum demersum HOM05D005404 ORTHO05D006623 1.4e-37 159.8 129 75.2
Manes.17G066000 Manihot esculenta HOM05D005404 ORTHO05D006623 1.4e-37 159.8 129 73.6
SalBow7G3345 Salvia bowleyana HOM05D005404 ORTHO05D006623 1.4e-37 159.8 128 72.7
Haze_05531 Corylus avellana HOM05D005404 ORTHO05D006623 3.1e-37 158.7 116 77.6
Zm00001eb294640 Zea mays HOM05D005404 ORTHO05D006623 3.1e-37 158.7 129 74.4
Aa31LG6G5780 Aethionema arabicum HOM05D005404 ORTHO05D006623 6.8e-37 157.5 95 91.6
ECA248G0679 Erigeron canadensis HOM05D005404 ORTHO05D006623 1.2e-36 156.8 129 75.2
RcHm_v2.0_Chr5g0013081 Rosa chinensis HOM05D005404 ORTHO05D006623 1.5e-36 156.4 129 72.9
FAN25G0636 Fragaria x ananassa HOM05D005404 ORTHO05D006623 2.6e-36 155.6 128 73.4
FAN25G2540 Fragaria x ananassa HOM05D005404 ORTHO05D006623 2.6e-36 155.6 128 73.4
Hma1.2p1_0015F.1_g010240 Hydrangea macrophylla HOM05D005404 ORTHO05D006623 1.7e-35 152.9 152 63.8
Oeu012458.1 Olea europaea HOM05D005404 ORTHO05D006623 2.9e-35 152.1 128 71.9
Dinv32291 Davidia involucrata HOM05D005404 ORTHO05D006623 4.9e-35 151.4 116 76.7
C07p15720 Brassica napus HOM05D005404 ORTHO05D006623 6.4e-35 151.0 86 97.7
AUR62027578 Chenopodium quinoa HOM05D005404 ORTHO05D006623 2.1e-33 146.0 129 69.8
FAN16G2304 Fragaria x ananassa HOM05D005404 ORTHO05D006623 2.7e-33 145.6 129 69.8
TWI09G1218 Tripterygium wilfordii HOM05D005404 ORTHO05D006623 3.5e-33 145.2 112 77.7
Lj2A310T44 Lonicera japonica HOM05D005404 ORTHO05D006623 2.3e-32 142.5 116 74.1
AUR62035781 Chenopodium quinoa HOM05D005404 ORTHO05D006623 8.6e-32 140.6 129 67.4
Nitab4.5_0008782g0030 Nicotiana tabacum HOM05D005404 ORTHO05D006623 4.3e-31 138.3 128 68.0
CAN.G257.34 Capsicum annuum HOM05D005404 ORTHO05D006623 1.2e-30 136.7 128 64.8
FvH4_3g06230 Fragaria vesca HOM05D005404 ORTHO05D006623 3.6e-30 135.2 116 70.7
AUR62023445 Chenopodium quinoa HOM05D005404 ORTHO05D006623 1.1e-29 133.7 93 79.6
Oeu052389.2 Olea europaea HOM05D005404 ORTHO05D006623 2.3e-29 132.5 141 59.6
Oeu046548.1 Olea europaea HOM05D005404 ORTHO05D006623 2.0e-28 129.4 116 68.1
PGSC0003DMG400003081 Solanum tuberosum HOM05D005404 ORTHO05D006623 2.0e-28 129.4 129 64.3
Zm00001eb342640 Zea mays HOM05D005404 ORTHO05D006623 2.6e-28 129.0 129 64.3
MSTRG.14760 Avicennia marina HOM05D005404 ORTHO05D006623 9.9e-28 127.1 103 70.9
TAR636G3446 Trochodendron aralioides HOM05D005404 ORTHO05D006623 1.9e-26 122.9 82 85.4
Pp3c14_19320 Physcomitrium patens HOM05D005404 ORTHO05D006623 2.4e-26 122.5 131 61.1
MD09G1183100 Malus domestica HOM05D005404 ORTHO05D006623 7.1e-26 120.9 79 84.8
AagrBONN_evm.TU.Sc2ySwM_362.2923 Anthoceros agrestis HOM05D005404 ORTHO05D006623 1.6e-25 119.8 79 79.7
Peaxi162Scf00121g02445 Petunia axillaris HOM05D005404 ORTHO05D006623 2.1e-25 119.4 117 64.1
A09p36640 Brassica napus HOM05D005404 ORTHO05D006623 2.3e-24 115.9 64 100.0
SMO358G0232 Selaginella moellendorffii HOM05D005404 ORTHO05D006623 1.1e-23 113.6 127 57.5
ClCG01G024320 Citrullus lanatus HOM05D005404 ORTHO05D006623 4.3e-23 111.7 82 78.0
Cpa.g.sc17.100 Carica papaya HOM05D005404 ORTHO05D006623 1.1e-21 107.1 63 90.5
arahy.Tifrunner.gnm1.ann1.JSLQ1D Arachis hypogaea HOM05D005404 ORTHO05D006623 1.4e-21 106.7 65 86.2
Mapoly0080s0013 Marchantia polymorpha HOM05D005404 ORTHO05D006623 6.8e-21 104.4 133 54.9
Os05g0546500 Oryza sativa ssp. japonica HOM05D005404 ORTHO05D006623 9.9e-20 100.5 67 80.6
Cre12.g557800 Chlamydomonas reinhardtii HOM05D005404 ORTHO05D006623 6.4e-19 97.8 120 50.8
SEGI_04398 Sequoiadendron giganteum HOM05D005404 ORTHO05D006623 1.1e-18 97.1 65 80.0
C03p76250 Brassica napus HOM05D005404 ORTHO05D006623 4.2e-18 95.1 54 100.0
CBR_g45965 Chara braunii HOM05D005404 ORTHO05D006623 4.2e-18 95.1 82 62.2
Nitab4.5_0003527g0030 Nicotiana tabacum HOM05D005404 ORTHO05D006623 2.3e-16 89.4 58 82.8
Nitab4.5_0010964g0060 Nicotiana tabacum HOM05D000728 ORTHO05D001474 3.0e-16 89.0 270 33.7
arahy.Tifrunner.gnm1.ann1.HCY9BB Arachis hypogaea HOM05D005404 ORTHO05D006623 1.5e-15 86.7 63 77.8
HPP92_021556 Vanilla planifolia HOM05D000864 ORTHO05D001658 2.4e-13 79.3 64 70.3
PRCOL_00005423 Prasinoderma coloniale HOM05D005404 ORTHO05D006623 4.0e-13 78.6 84 51.2
HPP92_021557 Vanilla planifolia HOM05D005404 ORTHO05D006623 6.9e-13 77.8 51 80.4
CSS0048314 Camellia sinensis var. sinensis HOM05D005404 ORTHO05D006623 2.4e-10 69.3 72 59.7
Gohir.A08G088100 Gossypium hirsutum HOM05D005404 ORTHO05D006623 2.7e-09 65.9 51 76.5
Nn4g23354 Nelumbo nucifera HOM05D005404 ORTHO05D006623 7.3e-07 57.8 40 77.5


User provided reference genes

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