Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB07g31037 Brassica carinata HOM05D004883 ORTHO05D005766 5.3e-63 244.2 124 100.0
BcaC04g21964 Brassica carinata HOM05D004883 ORTHO05D005766 3.4e-62 241.5 124 98.4
A09p20040 Brassica napus HOM05D004883 ORTHO05D005766 3.4e-62 241.5 124 98.4
C09p25420 Brassica napus HOM05D004883 ORTHO05D005766 3.4e-62 241.5 124 98.4
BolC9t55441H Brassica oleracea HOM05D004883 ORTHO05D005766 3.4e-62 241.5 124 98.4
BraA09t37617Z Brassica rapa HOM05D004883 ORTHO05D005766 3.4e-62 241.5 124 98.4
Sp2g07620 Schrenkiella parvula HOM05D004883 ORTHO05D005766 5.8e-62 240.7 124 98.4
BcaC06g31741 Brassica carinata HOM05D004883 ORTHO05D005766 7.6e-62 240.4 124 97.6
Carub.0008s0602 Capsella rubella HOM05D004883 ORTHO05D005766 4.9e-61 237.7 124 96.8
Thhalv10003291m.g Eutrema salsugineum HOM05D004883 ORTHO05D005766 6.5e-61 237.3 124 96.8
AT5G42890 Arabidopsis thaliana HOM05D004883 ORTHO05D005766 8.4e-61 236.9 124 95.2
AL8G18060 Arabidopsis lyrata HOM05D004883 ORTHO05D005766 1.1e-60 236.5 124 95.2
CARHR181250 Cardamine hirsuta HOM05D004883 ORTHO05D005766 7.9e-59 230.3 124 93.5
THA.LOC104814168 Tarenaya hassleriana HOM05D004883 ORTHO05D005766 2.5e-57 225.3 121 92.6
THA.LOC104822849 Tarenaya hassleriana HOM05D004883 ORTHO05D005766 3.3e-57 224.9 121 91.7
Atru.chr13.693 Acer truncatum HOM05D004883 ORTHO05D005766 8.2e-56 220.3 122 83.6
Aa31LG9G12950 Aethionema arabicum HOM05D004883 ORTHO05D005766 1.1e-55 219.9 120 93.3
Cpa.g.sc49.21 Carica papaya HOM05D004883 ORTHO05D005766 1.2e-54 216.5 121 86.0
PGR031G0707 Punica granatum HOM05D004883 ORTHO05D005766 2.0e-54 215.7 124 83.1
Gohir.D01G108200 Gossypium hirsutum HOM05D004883 ORTHO05D005766 2.6e-54 215.3 123 83.7
Gorai.009G211700 Gossypium raimondii HOM05D004883 ORTHO05D005766 3.4e-54 214.9 124 83.9
Gohir.A01G119900 Gossypium hirsutum HOM05D004883 ORTHO05D005766 4.5e-54 214.5 124 83.9
Thecc.08G007300 Theobroma cacao HOM05D004883 ORTHO05D005766 7.6e-54 213.8 124 83.1
Gohir.D05G205400 Gossypium hirsutum HOM05D004883 ORTHO05D005766 1.0e-53 213.4 124 83.1
Gorai.002G132400 Gossypium raimondii HOM05D004883 ORTHO05D005766 1.0e-53 213.4 124 83.1
COL.COLO4_26509 Corchorus olitorius HOM05D004883 ORTHO05D005766 1.7e-53 212.6 124 83.1
Ciclev10002854m.g Citrus clementina HOM05D004883 ORTHO05D005766 8.4e-53 210.3 122 81.1
GSVIVG01009495001 Vitis vinifera HOM05D004883 ORTHO05D005766 8.4e-53 210.3 122 83.6
Dinv35960 Davidia involucrata HOM05D004883 ORTHO05D005766 1.9e-52 209.1 122 82.0
QL02p004805 Quercus lobata HOM05D004883 ORTHO05D005766 3.2e-52 208.4 119 84.0
Glyma.17G242300 Glycine max HOM05D004883 ORTHO05D005766 4.2e-52 208.0 123 82.1
CiPaw.16G043800 Carya illinoinensis HOM05D004883 ORTHO05D005766 5.5e-52 207.6 123 82.1
VMungo0647G0758 Vigna mungo HOM05D004883 ORTHO05D005766 5.5e-52 207.6 122 82.8
HanXRQChr14g0439621 Helianthus annuus HOM05D004883 ORTHO05D005766 9.3e-52 206.8 124 81.5
Medtr1g019430 Medicago truncatula HOM05D004883 ORTHO05D005766 9.3e-52 206.8 123 82.1
Phvul.001G022000 Phaseolus vulgaris HOM05D004883 ORTHO05D005766 9.3e-52 206.8 122 82.8
TAR381G1103 Trochodendron aralioides HOM05D004883 ORTHO05D005766 9.3e-52 206.8 123 80.5
arahy.Tifrunner.gnm1.ann1.09A9GY Arachis hypogaea HOM05D004883 ORTHO05D005766 2.7e-51 205.3 119 83.2
arahy.Tifrunner.gnm1.ann1.B0E7W8 Arachis hypogaea HOM05D004883 ORTHO05D005766 2.7e-51 205.3 119 83.2
TPR.G3781 Trifolium pratense HOM05D004883 ORTHO05D005766 3.5e-51 204.9 123 80.5
Haze_17525 Corylus avellana HOM05D004883 ORTHO05D005766 4.6e-51 204.5 123 80.5
Duzib093G0126 Durio zibethinus HOM05D004883 ORTHO05D005766 4.6e-51 204.5 111 88.3
Glyma.14G082800 Glycine max HOM05D004883 ORTHO05D005766 4.6e-51 204.5 123 80.5
Actinidia38058 Actinidia chinensis HOM05D004883 ORTHO05D005766 6.1e-51 204.1 122 81.1
Lsat_1_v5_gn_4_125820 Lactuca sativa HOM05D004883 ORTHO05D005766 6.1e-51 204.1 124 80.6
Rhsim07G0228400 Rhododendron simsii HOM05D004883 ORTHO05D005766 6.1e-51 204.1 122 79.5
MSTRG.1348 Avicennia marina HOM05D004883 ORTHO05D005766 7.9e-51 203.8 119 82.4
Lj5g0012185 Lotus japonicus HOM05D004883 ORTHO05D005766 1.0e-50 203.4 122 81.1
vmacro04449 Vaccinium macrocarpon HOM05D004883 ORTHO05D005766 1.0e-50 203.4 123 78.9
Hma1.2p1_0982F.1_g244010 Hydrangea macrophylla HOM05D004883 ORTHO05D005766 1.3e-50 203.0 122 78.7
MD15G1083000 Malus domestica HOM05D004883 ORTHO05D005766 1.3e-50 203.0 120 80.8
AUR62012534 Chenopodium quinoa HOM05D004883 ORTHO05D005766 1.8e-50 202.6 120 80.0
Peaxi162Scf00010g00308 Petunia axillaris HOM05D004883 ORTHO05D005766 2.3e-50 202.2 122 81.1
Migut.C00579 Erythranthe guttata HOM05D004883 ORTHO05D005766 3.9e-50 201.4 121 79.3
Eucgr.F02346 Eucalyptus grandis HOM05D004883 ORTHO05D005766 3.9e-50 201.4 154 68.2
Psat1g147680 Pisum sativum HOM05D004883 ORTHO05D005766 3.9e-50 201.4 122 79.5
AUR62014661 Chenopodium quinoa HOM05D004883 ORTHO05D005766 5.1e-50 201.1 120 79.2
AUR62044174 Chenopodium quinoa HOM05D004883 ORTHO05D005766 5.1e-50 201.1 120 79.2
Lalb_Chr22g0355131 Lupinus albus HOM05D004883 ORTHO05D005766 6.7e-50 200.7 119 82.4
Solyc04g078920.3 Solanum lycopersicum HOM05D004883 ORTHO05D005766 6.7e-50 200.7 122 79.5
Sopen04g032520 Solanum pennellii HOM05D004883 ORTHO05D005766 6.7e-50 200.7 122 79.5
Prupe.1G435500 Prunus persica HOM05D004883 ORTHO05D005766 8.7e-50 200.3 123 75.6
Migut.N02708 Erythranthe guttata HOM05D004883 ORTHO05D005766 1.1e-49 199.9 123 77.2
Sc02g0007090 Simmondsia chinensis HOM05D004883 ORTHO05D005766 1.5e-49 199.5 122 77.0
Ah.09g236860 Amaranthus hybridus HOM05D004883 ORTHO05D005766 1.9e-49 199.1 120 77.5
PGSC0003DMG400007973 Solanum tuberosum HOM05D004883 ORTHO05D005766 1.9e-49 199.1 122 78.7
Ca_13291_v3 Cicer arietinum L. HOM05D004883 ORTHO05D005766 2.5e-49 198.7 122 75.4
Gohir.A05G202300 Gossypium hirsutum HOM05D004883 ORTHO05D005766 3.3e-49 198.4 109 87.2
Gohir.D06G016900 Gossypium hirsutum HOM05D004883 ORTHO05D005766 3.3e-49 198.4 120 77.5
Gorai.010G019800 Gossypium raimondii HOM05D004883 ORTHO05D005766 3.3e-49 198.4 120 77.5
Oeu057282.1 Olea europaea HOM05D004883 ORTHO05D005766 3.3e-49 198.4 122 77.9
SalBow7G2082 Salvia bowleyana HOM05D004883 ORTHO05D005766 3.3e-49 198.4 121 78.5
HanXRQChr05g0150871 Helianthus annuus HOM05D004883 ORTHO05D005766 4.3e-49 198.0 124 77.4
FvH4_2g34441 Fragaria vesca HOM05D004883 ORTHO05D005766 5.7e-49 197.6 120 77.5
Lsat_1_v5_gn_6_112040 Lactuca sativa HOM05D004883 ORTHO05D005766 5.7e-49 197.6 123 77.2
Hund21302 Selenicereus undatus HOM05D004883 ORTHO05D005766 7.4e-49 197.2 119 76.5
EL10Ac8g19960 Beta vulgaris HOM05D004883 ORTHO05D005766 9.7e-49 196.8 120 77.5
ECA232G2590 Erigeron canadensis HOM05D004883 ORTHO05D005766 9.7e-49 196.8 122 77.9
FAN20G2534 Fragaria x ananassa HOM05D004883 ORTHO05D005766 1.3e-48 196.4 120 76.7
MD08G1101600 Malus domestica HOM05D004883 ORTHO05D005766 1.3e-48 196.4 120 77.5
SalBow3G1199 Salvia bowleyana HOM05D004883 ORTHO05D005766 1.3e-48 196.4 122 77.9
FAN27G2225 Fragaria x ananassa HOM05D004883 ORTHO05D005766 1.6e-48 196.1 119 76.5
RcHm_v2.0_Chr6g0307931 Rosa chinensis HOM05D004883 ORTHO05D005766 2.2e-48 195.7 120 76.7
Cc10_g04160 Coffea canephora HOM05D004883 ORTHO05D005766 2.8e-48 195.3 122 76.2
Nn1g04858 Nelumbo nucifera HOM05D004883 ORTHO05D005766 2.8e-48 195.3 119 82.4
ClCG05G019880 Citrullus lanatus HOM05D004883 ORTHO05D005766 3.1e-47 191.8 123 72.4
Duzib041G0234 Durio zibethinus HOM05D004883 ORTHO05D005766 3.1e-47 191.8 124 75.8
Sed0005554 Sechium edule HOM05D004883 ORTHO05D005766 3.1e-47 191.8 123 72.4
CsaV3_4G034310 Cucumis sativus L. HOM05D004883 ORTHO05D005766 5.3e-47 191.0 123 70.7
DCAR_012777 Daucus carota HOM05D004883 ORTHO05D005766 5.3e-47 191.0 119 75.6
Oeu044836.1 Olea europaea HOM05D004883 ORTHO05D005766 5.3e-47 191.0 122 74.6
CSS0025959 Camellia sinensis var. sinensis HOM05D004883 ORTHO05D005766 6.9e-47 190.7 122 73.8
CSS0031938 Camellia sinensis var. sinensis HOM05D004883 ORTHO05D005766 6.9e-47 190.7 122 73.8
ATR1102G009 Amborella trichopoda HOM05D004883 ORTHO05D005766 9.0e-47 190.3 124 76.6
DCAR_020929 Daucus carota HOM05D004883 ORTHO05D005766 1.5e-46 189.5 124 71.0
PSO210G0389 Papaver somniferum HOM05D004883 ORTHO05D005766 2.0e-46 189.1 124 75.0
PSO170G5588 Papaver somniferum HOM05D004883 ORTHO05D005766 2.6e-46 188.7 124 75.0
Sabra02G0098900 Salix brachista HOM05D004883 ORTHO05D005766 1.0e-45 186.8 124 71.0
CDE08G1634 Ceratophyllum demersum HOM05D004883 ORTHO05D005766 2.9e-45 185.3 120 76.7
TWI56G0859 Tripterygium wilfordii HOM05D004883 ORTHO05D005766 2.9e-45 185.3 123 73.2
TWI56G0476 Tripterygium wilfordii HOM05D004883 ORTHO05D005766 6.5e-45 184.1 123 73.2
ECA246G2602 Erigeron canadensis HOM05D004883 ORTHO05D005766 8.5e-45 183.7 123 73.2
C03p39670 Brassica napus HOM05D004883 ORTHO05D005766 1.4e-44 183.0 107 89.7
Potri.002G126200 Populus trichocarpa HOM05D004883 ORTHO05D005766 1.4e-44 183.0 124 68.5
Aqoxy5G01236 Aquilegia oxysepala HOM05D004883 ORTHO05D005766 2.5e-44 182.2 123 74.0
FvH4_2g34440 Fragaria vesca HOM05D004883 ORTHO05D005766 2.5e-44 182.2 120 71.7
Manes.05G174000 Manihot esculenta HOM05D004883 ORTHO05D005766 3.2e-44 181.8 119 73.1
BcaC09g50201 Brassica carinata HOM05D004883 ORTHO05D005766 5.5e-44 181.0 111 83.8
MELO3C016751.2 Cucumis melo HOM05D004883 ORTHO05D005766 9.4e-44 180.3 129 65.9
TWI36G0538 Tripterygium wilfordii HOM05D004883 ORTHO05D005766 1.2e-43 179.9 123 73.2
Os06g0211300 Oryza sativa ssp. japonica HOM05D004883 ORTHO05D005766 2.1e-43 179.1 124 69.4
Hund23571 Selenicereus undatus HOM05D004883 ORTHO05D005766 6.7e-42 174.1 120 66.7
SEGI_37934 Sequoiadendron giganteum HOM05D004883 ORTHO05D005766 3.3e-41 171.8 123 66.7
Pp3c24_4700 Physcomitrium patens HOM05D004883 ORTHO05D005766 4.3e-41 171.4 121 70.2
Sabra14G0020100 Salix brachista HOM05D004883 ORTHO05D005766 5.7e-41 171.0 124 66.9
Potri.014G029300 Populus trichocarpa HOM05D004883 ORTHO05D005766 9.7e-41 170.2 124 66.1
Mapoly0033s0053 Marchantia polymorpha HOM05D004883 ORTHO05D005766 2.2e-40 169.1 122 69.7
Os02g0765800 Oryza sativa ssp. japonica HOM05D004883 ORTHO05D005766 2.2e-40 169.1 124 65.3
Nitab4.5_0000287g0320 Nicotiana tabacum HOM05D004883 ORTHO05D005766 3.7e-40 168.3 122 70.5
Nitab4.5_0003118g0020 Nicotiana tabacum HOM05D004883 ORTHO05D005766 3.7e-40 168.3 122 70.5
SMO169G0122 Selaginella moellendorffii HOM05D004883 ORTHO05D005766 9.1e-39 163.7 121 68.6
MBI06_g02552_MAGBIO Magnolia biondii HOM05D004883 ORTHO05D005766 7.7e-38 160.6 120 70.8
CSS0006435 Camellia sinensis var. sinensis HOM05D004883 ORTHO05D005766 5.0e-37 157.9 121 63.6
MD00G1215600 Malus domestica HOM05D004883 ORTHO05D005766 5.0e-37 157.9 100 74.0
Manes.18G037300 Manihot esculenta HOM05D004883 ORTHO05D005766 2.5e-36 155.6 121 62.0
HPP92_013338 Vanilla planifolia HOM05D004883 ORTHO05D005766 6.1e-35 151.0 121 65.3
TAR625G0321 Trochodendron aralioides HOM05D004883 ORTHO05D005766 3.0e-34 148.7 95 74.7
CANSAT35G0766 Cannabis sativa HOM05D004883 ORTHO05D005766 1.1e-33 146.7 121 56.2
FAN15G1199 Fragaria x ananassa HOM05D004883 ORTHO05D005766 6.3e-32 141.0 83 78.3
BcaC01g04518 Brassica carinata HOM05D004883 ORTHO05D005766 5.9e-30 134.4 82 86.6
Peaxi162Scf00252g00711 Petunia axillaris HOM05D004883 ORTHO05D005766 1.0e-29 133.7 122 58.2
BolC1t02723H Brassica oleracea HOM05D004883 ORTHO05D005766 1.5e-28 129.8 68 94.1
BolC9t59992H Brassica oleracea HOM05D004883 ORTHO05D005766 3.6e-27 125.2 100 68.0
CAN.G1139.16 Capsicum annuum HOM05D004883 ORTHO05D005766 4.7e-27 124.8 90 67.8
CAN.G371.3 Capsicum annuum HOM05D004883 ORTHO05D005766 6.1e-27 124.4 123 56.9
AagrBONN_evm.TU.Sc2ySwM_344.1976 Anthoceros agrestis HOM05D004883 ORTHO05D005766 1.0e-26 123.6 122 51.6
EL10Ac4g09184 Beta vulgaris HOM05D004883 ORTHO05D005766 2.6e-25 119.0 115 53.9
EL10Ac7g17187 Beta vulgaris HOM05D004883 ORTHO05D005766 1.3e-24 116.7 83 69.9
Nn5g30317 Nelumbo nucifera HOM05D004883 ORTHO05D005766 8.2e-24 114.0 121 55.4
Actinidia29871 Actinidia chinensis HOM05D004883 ORTHO05D005766 1.1e-23 113.6 62 88.7
Gohir.A06G018633 Gossypium hirsutum HOM05D004883 ORTHO05D005766 1.0e-21 107.1 93 57.0
Lj4A58G20 Lonicera japonica HOM05D000983 ORTHO05D005766 3.8e-21 105.1 60 83.3
Os01g0357200 Oryza sativa ssp. japonica HOM05D004883 ORTHO05D005766 7.2e-20 100.9 88 59.1
RcHm_v2.0_Chr5g0032801 Rosa chinensis HOM05D004883 ORTHO05D005766 5.2e-18 94.7 85 60.0
C01p27920 Brassica napus HOM05D004883 ORTHO05D005766 1.3e-16 90.1 104 55.8
unitig_32.g11126 Utricularia gibba HOM05D004883 ORTHO05D005766 3.1e-15 85.5 61 65.6
C09p72490 Brassica napus HOM05D004883 ORTHO05D005766 7.0e-15 84.3 43 97.7
PRCOL_00003255 Prasinoderma coloniale HOM05D004883 ORTHO05D005766 4.4e-09 65.1 112 34.8
MELO3C033382.2 Cucumis melo HOM05D004883 ORTHO05D005766 8.3e-08 60.8 39 69.2
Haze_26844 Corylus avellana HOM05D005792 ORTHO05D007171 1.8e-07 59.7 111 34.2
CBR_g37451 Chara braunii HOM05D004883 ORTHO05D005766 7.7e-06 54.3 54 57.4


User provided reference genes

Program Settings