Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB07g31004 Brassica carinata HOM05D007216 ORTHO05D009261 1.2e-130 469.9 248 100.0
BcaC04g21907 Brassica carinata HOM05D007216 ORTHO05D009261 1.4e-107 393.3 245 85.7
BraA09t37658Z Brassica rapa HOM05D007216 ORTHO05D009261 8.5e-105 384.0 245 84.5
A09p20520 Brassica napus HOM05D007216 ORTHO05D009261 1.4e-102 376.7 253 81.4
BolC9t55498H Brassica oleracea HOM05D007216 ORTHO05D009261 2.6e-101 372.5 246 82.5
C09p25930 Brassica napus HOM05D007216 ORTHO05D009261 4.4e-93 345.1 213 85.9
Thhalv10003353m.g Eutrema salsugineum HOM05D007216 ORTHO05D009261 5.9e-90 334.7 247 74.5
AL390U10010 Arabidopsis lyrata HOM05D007216 ORTHO05D009261 5.8e-85 318.2 244 72.1
BcaC06g31685 Brassica carinata HOM05D007216 ORTHO05D009261 8.3e-84 314.3 246 72.0
CARHR006300 Cardamine hirsuta HOM05D007216 ORTHO05D009261 7.8e-82 307.8 248 66.9
BcaC06g34638 Brassica carinata HOM05D007216 ORTHO05D009261 1.9e-80 303.1 245 71.4
C07p26230 Brassica napus HOM05D007216 ORTHO05D009261 1.9e-80 303.1 245 71.4
BolC7t43151H Brassica oleracea HOM05D007216 ORTHO05D009261 1.9e-80 303.1 245 71.4
A06p47770 Brassica napus HOM05D007216 ORTHO05D009261 4.7e-79 298.5 237 73.0
Carub.0008s0499 Capsella rubella HOM05D007216 ORTHO05D009261 2.6e-77 292.7 237 68.4
SpUn0744_0010 Schrenkiella parvula HOM05D007216 ORTHO05D009261 7.5e-77 291.2 216 74.5
BraA06t27645Z Brassica rapa HOM05D007216 ORTHO05D009261 4.4e-69 265.4 216 71.8
AT5G43650 Arabidopsis thaliana HOM05D007216 ORTHO05D009261 2.3e-65 253.1 217 65.9
Aa31LG5G3580 Aethionema arabicum HOM05D007216 ORTHO05D009261 7.3e-64 248.1 239 56.9
SpUn0429_0010 Schrenkiella parvula HOM05D007216 ORTHO05D009261 9.9e-61 237.7 206 65.5
THA.LOC104827376 Tarenaya hassleriana HOM05D007216 ORTHO05D009261 8.7e-49 198.0 231 50.2
THA.LOC104801097 Tarenaya hassleriana HOM05D007216 ORTHO05D009261 1.2e-45 187.6 270 42.6
Haze_11297 Corylus avellana HOM05D007216 ORTHO05D009261 4.9e-36 155.6 200 46.5
Haze_11299 Corylus avellana HOM05D007216 ORTHO05D009261 4.9e-36 155.6 234 43.6
Cfa008380 Carpinus fangiana HOM05D007216 ORTHO05D009261 8.4e-36 154.8 220 42.3
QL06p015626 Quercus lobata HOM05D007216 ORTHO05D009261 1.6e-34 150.6 241 39.4
Ciclev10005777m.g Citrus clementina HOM05D007216 ORTHO05D009261 3.0e-33 146.4 237 42.2
Atru.chr4.2233 Acer truncatum HOM05D007216 ORTHO05D009261 6.7e-33 145.2 242 39.3
Potri.010G077000 Populus trichocarpa HOM05D007216 ORTHO05D009261 3.3e-32 142.9 230 40.4
Cpa.g.sc58.45 Carica papaya HOM05D007216 ORTHO05D009261 9.6e-32 141.4 205 41.5
MD16G1208400 Malus domestica HOM05D007216 ORTHO05D009261 1.4e-30 137.5 208 44.7
CSS0019068 Camellia sinensis var. sinensis HOM05D007216 ORTHO05D009261 1.8e-30 137.1 186 44.6
Thecc.04G245800 Theobroma cacao HOM05D007216 ORTHO05D009261 2.4e-30 136.7 230 38.7
Gohir.A09G222900 Gossypium hirsutum HOM05D007216 ORTHO05D009261 3.1e-30 136.3 192 43.8
Potri.008G161800 Populus trichocarpa HOM05D007216 ORTHO05D009261 5.3e-30 135.6 234 39.7
Sabra10G0031800 Salix brachista HOM05D007216 ORTHO05D009261 5.3e-30 135.6 234 38.5
CiPaw.02G116600 Carya illinoinensis HOM05D007216 ORTHO05D009261 9.0e-30 134.8 244 39.3
Gorai.006G246400 Gossypium raimondii HOM05D007216 ORTHO05D009261 1.2e-29 134.4 181 44.2
TAR365G0907 Trochodendron aralioides HOM05D007216 ORTHO05D009261 1.5e-29 134.0 243 39.1
Duzib052G0756 Durio zibethinus HOM05D007216 ORTHO05D009261 2.0e-29 133.7 226 39.8
QL06p015621 Quercus lobata HOM05D007216 ORTHO05D009261 2.0e-29 133.7 220 38.2
Gohir.D09G224900 Gossypium hirsutum HOM05D007216 ORTHO05D009261 1.0e-28 131.3 166 45.8
Prupe.1G030500 Prunus persica HOM05D007216 ORTHO05D009261 1.0e-28 131.3 208 41.8
MD13G1206900 Malus domestica HOM05D007216 ORTHO05D009261 2.9e-28 129.8 208 41.8
CiPaw.01G190600 Carya illinoinensis HOM05D007216 ORTHO05D009261 3.8e-28 129.4 208 40.9
Duzib151G0820 Durio zibethinus HOM05D007216 ORTHO05D009261 3.8e-28 129.4 181 44.8
Rhsim02G0032900 Rhododendron simsii HOM05D007216 ORTHO05D009261 6.5e-28 128.6 189 42.3
Nn3g19525 Nelumbo nucifera HOM05D007216 ORTHO05D009261 1.4e-27 127.5 205 41.5
Duzib151G0028 Durio zibethinus HOM05D007216 ORTHO05D009261 1.9e-27 127.1 181 44.2
Solyc09g083360.3 Solanum lycopersicum HOM05D007216 ORTHO05D009261 3.2e-27 126.3 216 38.4
Manes.03G169100 Manihot esculenta HOM05D007216 ORTHO05D009261 4.2e-27 125.9 234 36.8
Sopen09g032280 Solanum pennellii HOM05D007216 ORTHO05D009261 5.5e-27 125.6 213 38.0
Medtr1g040435 Medicago truncatula HOM05D007216 ORTHO05D009261 7.1e-27 125.2 240 38.3
GSVIVG01018111001 Vitis vinifera HOM05D007216 ORTHO05D009261 1.2e-26 124.4 166 47.6
Nn1g02593 Nelumbo nucifera HOM05D007216 ORTHO05D009261 1.6e-26 124.0 209 40.7
Duzib212G0514 Durio zibethinus HOM05D007216 ORTHO05D009261 2.1e-26 123.6 211 38.4
PGR031G3332 Punica granatum HOM05D007216 ORTHO05D009261 2.1e-26 123.6 199 37.7
FvH4_4g02610 Fragaria vesca HOM05D007216 ORTHO05D009261 3.5e-26 122.9 215 42.3
RcHm_v2.0_Chr4g0390311 Rosa chinensis HOM05D007216 ORTHO05D009261 4.6e-26 122.5 240 40.4
Actinidia05467 Actinidia chinensis HOM05D007216 ORTHO05D009261 6.1e-26 122.1 206 42.7
Oeu008788.2 Olea europaea HOM05D007216 ORTHO05D009261 1.8e-25 120.6 184 41.8
Peaxi162Scf00813g00118 Petunia axillaris HOM05D007216 ORTHO05D009261 2.3e-25 120.2 187 38.0
Psat6g102240 Pisum sativum HOM05D007216 ORTHO05D009261 2.3e-25 120.2 235 39.6
Actinidia08446 Actinidia chinensis HOM05D007216 ORTHO05D009261 3.0e-25 119.8 205 40.5
ATR0665G548 Amborella trichopoda HOM05D007216 ORTHO05D009261 6.7e-25 118.6 182 40.1
Sabra08G0123600 Salix brachista HOM05D007216 ORTHO05D009261 8.7e-25 118.2 187 39.6
Sed0021571 Sechium edule HOM05D007216 ORTHO05D009261 8.7e-25 118.2 189 39.7
DCAR_027275 Daucus carota HOM05D007216 ORTHO05D009261 1.1e-24 117.9 202 37.1
Eucgr.H00196 Eucalyptus grandis HOM05D007216 ORTHO05D009261 1.5e-24 117.5 238 35.7
TAR636G2640 Trochodendron aralioides HOM05D007216 ORTHO05D009261 1.5e-24 117.5 185 42.2
CANSAT78G2280 Cannabis sativa HOM05D007216 ORTHO05D009261 4.3e-24 115.9 242 34.7
COL.COLO4_15786 Corchorus olitorius HOM05D007216 ORTHO05D009261 5.7e-24 115.5 186 41.9
TWI09G1088 Tripterygium wilfordii HOM05D007216 ORTHO05D009261 7.4e-24 115.2 204 38.2
Cc03_g04820 Coffea canephora HOM05D007216 ORTHO05D009261 1.3e-23 114.4 245 35.1
FAN12G1817 Fragaria x ananassa HOM05D007216 ORTHO05D009261 2.8e-23 113.2 194 41.8
TWI73G0753 Tripterygium wilfordii HOM05D007216 ORTHO05D009261 3.7e-23 112.8 195 37.9
Sed0000846 Sechium edule HOM05D007216 ORTHO05D009261 8.2e-23 111.7 180 40.6
Sed0019243 Sechium edule HOM05D007216 ORTHO05D009261 1.1e-22 111.3 178 40.4
Glyma.02G000800 Glycine max HOM05D007216 ORTHO05D009261 1.4e-22 110.9 251 35.5
Migut.G00433 Erythranthe guttata HOM05D007216 ORTHO05D009261 1.8e-22 110.5 196 38.3
ClCG06G006720 Citrullus lanatus HOM05D007216 ORTHO05D009261 2.4e-22 110.2 193 40.4
MELO3C026778.2 Cucumis melo HOM05D007216 ORTHO05D009261 6.9e-22 108.6 186 40.9
CsaV3_2G013060 Cucumis sativus L. HOM05D007216 ORTHO05D009261 9.0e-22 108.2 186 40.9
Lalb_Chr03g0037861 Lupinus albus HOM05D007216 ORTHO05D009261 9.0e-22 108.2 181 40.9
Sc13g0004990 Simmondsia chinensis HOM05D007216 ORTHO05D009261 1.5e-21 107.5 234 35.9
Eucgr.J01563 Eucalyptus grandis HOM05D007216 ORTHO05D009261 2.6e-21 106.7 177 39.5
DCAR_027276 Daucus carota HOM05D007216 ORTHO05D009261 5.9e-21 105.5 203 35.5
Dinv29914 Davidia involucrata HOM05D007216 ORTHO05D009261 5.9e-21 105.5 148 45.9
Gorai.005G046700 Gossypium raimondii HOM05D007216 ORTHO05D009261 2.2e-20 103.6 205 37.1
MSTRG.4097 Avicennia marina HOM05D007216 ORTHO05D009261 2.9e-20 103.2 205 37.1
Gohir.D02G042400 Gossypium hirsutum HOM05D007216 ORTHO05D009261 2.9e-20 103.2 205 37.1
TPR.G22479 Trifolium pratense HOM05D007216 ORTHO05D009261 1.0e-17 94.7 198 37.9
Gohir.A02G035500 Gossypium hirsutum HOM05D007216 ORTHO05D009261 5.1e-17 92.4 205 34.6
Lj6C656T7 Lonicera japonica HOM05D007216 ORTHO05D009261 9.7e-16 88.2 208 33.2
Phvul.007G280700 Phaseolus vulgaris HOM05D007216 ORTHO05D009261 1.3e-15 87.8 159 39.6
Nitab4.5_0004798g0070 Nicotiana tabacum HOM05D007216 ORTHO05D009261 1.1e-14 84.7 209 32.1
Hma1.2p1_0893F.1_g233480 Hydrangea macrophylla HOM05D007216 ORTHO05D009261 3.1e-14 83.2 85 55.3
Os03g0741100 Oryza sativa ssp. japonica HOM05D007216 ORTHO05D009261 2.2e-12 77.0 149 36.2
Zm00001eb056760 Zea mays HOM05D007216 ORTHO05D009261 2.2e-12 77.0 156 36.5
Nitab4.5_0000525g0160 Nicotiana tabacum HOM05D007216 ORTHO05D009261 5.0e-12 75.9 199 32.2
CAN.G1007.15 Capsicum annuum HOM05D007216 ORTHO05D009261 6.5e-12 75.5 120 39.2
Dinv44631 Davidia involucrata HOM05D007216 ORTHO05D009261 8.5e-12 75.1 111 42.3
HPP92_023468 Vanilla planifolia HOM05D007216 ORTHO05D009261 1.0e-09 68.2 234 32.5
HPP92_023463 Vanilla planifolia HOM05D007216 ORTHO05D009261 1.4e-09 67.8 211 32.7
Aqoxy5G00327 Aquilegia oxysepala HOM05D007216 ORTHO05D009261 6.7e-09 65.5 115 33.9
SEGI_05727 Sequoiadendron giganteum HOM05D010622 ORTHO05D011909 3.1e-06 56.6 162 29.6


User provided reference genes

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