Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB07g30913 Brassica carinata HOM05D004295 ORTHO05D004901 2.8e-61 238.4 121 100.0
BcaB05g24188 Brassica carinata HOM05D004295 ORTHO05D004901 8.8e-55 216.9 109 98.2
BcaB06g28413 Brassica carinata HOM05D004295 ORTHO05D004901 1.7e-45 186.0 103 92.2
C05p44040 Brassica napus HOM05D004295 ORTHO05D004901 1.8e-36 156.0 168 56.0
BolC5t33127H Brassica oleracea HOM05D004295 ORTHO05D004901 1.8e-36 156.0 168 56.0
BraA05t21740Z Brassica rapa HOM05D004295 ORTHO05D004901 5.4e-36 154.5 168 55.4
A05p28640 Brassica napus HOM05D004295 ORTHO05D004901 7.3e-33 144.1 162 55.6
Sp3g18310 Schrenkiella parvula HOM05D004295 ORTHO05D004901 3.5e-27 125.2 179 48.0
CARHR095900 Cardamine hirsuta HOM05D004295 ORTHO05D004901 1.2e-19 100.1 177 41.2
BcaB07g30968 Brassica carinata HOM05D004295 ORTHO05D004901 2.7e-19 99.0 50 96.0
Carub.0003s2023 Capsella rubella HOM05D004295 ORTHO05D004901 3.9e-18 95.1 176 39.2
AT3G20280 Arabidopsis thaliana HOM05D004295 ORTHO05D004901 9.5e-17 90.5 178 40.4
AL3G34000 Arabidopsis lyrata HOM05D004295 ORTHO05D004901 3.1e-15 85.5 173 38.7
Sp1g37440 Schrenkiella parvula HOM05D004295 ORTHO05D004901 1.4e-12 76.6 50 72.0
THA.LOC104810240 Tarenaya hassleriana HOM05D004295 ORTHO05D004901 3.2e-12 75.5 98 48.0
Aa31LG8G7090 Aethionema arabicum HOM05D004295 ORTHO05D004901 5.4e-12 74.7 50 70.0
BcaB02g11165 Brassica carinata HOM05D004295 ORTHO05D004901 9.2e-12 73.9 50 68.0
AL1G58280 Arabidopsis lyrata HOM05D004295 ORTHO05D004901 1.2e-11 73.6 105 42.9
BcaC05g27404 Brassica carinata HOM05D004295 ORTHO05D004901 1.6e-11 73.2 50 68.0
C05p33520 Brassica napus HOM05D004295 ORTHO05D004901 1.6e-11 73.2 50 68.0
BolC5t32077H Brassica oleracea HOM05D004295 ORTHO05D004901 1.6e-11 73.2 50 68.0
AT1G50620 Arabidopsis thaliana HOM05D004295 ORTHO05D004901 2.7e-11 72.4 50 68.0
A05p20040 Brassica napus HOM05D004295 ORTHO05D004901 2.7e-11 72.4 50 68.0
BraA05t20910Z Brassica rapa HOM05D004295 ORTHO05D004901 2.7e-11 72.4 50 68.0
Thhalv10011311m.g Eutrema salsugineum HOM05D004295 ORTHO05D004901 3.5e-11 72.0 116 38.8
Aa31LG10G3720 Aethionema arabicum HOM05D005922 ORTHO05D006934 7.8e-11 70.9 119 41.2
Carub.0001s3966 Capsella rubella HOM05D004295 ORTHO05D004901 3.0e-10 68.9 120 35.8
CARHR040670 Cardamine hirsuta HOM05D004295 ORTHO05D004901 3.9e-10 68.6 50 60.0
Cpa.g.sc12.238 Carica papaya HOM05D004295 ORTHO05D004901 3.9e-10 68.6 78 46.2
Medtr5g093940 Medicago truncatula HOM05D004295 ORTHO05D004901 1.1e-09 67.0 75 42.7
CARHR040590 Cardamine hirsuta HOM05D004295 ORTHO05D004901 3.3e-09 65.5 51 58.8
CDE04G3193 Ceratophyllum demersum HOM05D004295 ORTHO05D004901 7.3e-09 64.3 50 60.0
Ca_06350_v3 Cicer arietinum L. HOM05D004295 ORTHO05D004901 1.6e-08 63.2 78 41.0
CDE06G2452 Ceratophyllum demersum HOM05D004295 ORTHO05D004901 2.1e-08 62.8 50 58.0
Manes.15G066000 Manihot esculenta HOM05D004295 ORTHO05D004901 2.1e-08 62.8 50 58.0
TWI39G0230 Tripterygium wilfordii HOM05D004295 ORTHO05D004901 2.8e-08 62.4 68 42.6
ECA246G1209 Erigeron canadensis HOM05D004295 ORTHO05D004901 3.6e-08 62.0 77 44.2
Gohir.A08G024300 Gossypium hirsutum HOM05D004295 ORTHO05D004901 3.6e-08 62.0 50 58.0
Gohir.D08G034800 Gossypium hirsutum HOM05D004295 ORTHO05D004901 3.6e-08 62.0 50 58.0
Gorai.004G032700 Gossypium raimondii HOM05D004295 ORTHO05D004901 3.6e-08 62.0 50 58.0
Lsat_1_v5_gn_5_2601 Lactuca sativa HOM05D004295 ORTHO05D004901 3.6e-08 62.0 50 58.0
Psat2g010080 Pisum sativum HOM05D004295 ORTHO05D004901 3.6e-08 62.0 56 51.8
TPR.G30656 Trifolium pratense HOM05D004295 ORTHO05D004901 4.7e-08 61.6 56 50.0
MD03G1193000 Malus domestica HOM05D004295 ORTHO05D004901 6.2e-08 61.2 53 54.7
Nn7g37915 Nelumbo nucifera HOM05D004295 ORTHO05D004901 6.2e-08 61.2 52 59.6
PGR031G2569 Punica granatum HOM05D004295 ORTHO05D004901 6.2e-08 61.2 68 47.1
TWI38G1745 Tripterygium wilfordii HOM05D004295 ORTHO05D004901 6.2e-08 61.2 68 41.2
arahy.Tifrunner.gnm1.ann1.9RR6WG Arachis hypogaea HOM05D004295 ORTHO05D004901 8.1e-08 60.8 56 51.8
arahy.Tifrunner.gnm1.ann1.WPCM0F Arachis hypogaea HOM05D004295 ORTHO05D004901 8.1e-08 60.8 56 51.8
Lalb_Chr10g0107181 Lupinus albus HOM05D004295 ORTHO05D004901 8.1e-08 60.8 56 48.2
Potri.001G358900 Populus trichocarpa HOM05D004295 ORTHO05D004901 8.1e-08 60.8 56 48.2
SGA_v2.0_scaffold168G38508 Striga asiatica HOM05D004295 ORTHO05D004901 8.1e-08 60.8 109 34.9
CAN.G337.52 Capsicum annuum HOM05D004295 ORTHO05D004901 1.1e-07 60.5 50 54.0
MD11G1209200 Malus domestica HOM05D004295 ORTHO05D004901 1.1e-07 60.5 50 56.0
PSO210G3166 Papaver somniferum HOM05D004295 ORTHO05D004901 1.1e-07 60.5 52 53.8
PSO302G0053 Papaver somniferum HOM05D004295 ORTHO05D004901 1.1e-07 60.5 52 53.8
CSS0023200 Camellia sinensis var. sinensis HOM05D004295 ORTHO05D004901 1.4e-07 60.1 50 56.0
Migut.M01703 Erythranthe guttata HOM05D004295 ORTHO05D004901 1.4e-07 60.1 50 54.0
Haze_09750 Corylus avellana HOM05D004295 ORTHO05D004901 1.8e-07 59.7 100 34.0
Eucgr.F03507 Eucalyptus grandis HOM05D004295 ORTHO05D004901 1.8e-07 59.7 50 56.0
Nn1g07354 Nelumbo nucifera HOM05D003850 ORTHO05D004515 1.8e-07 59.7 52 59.6
CANSAT11G1231 Cannabis sativa HOM05D004295 ORTHO05D004901 2.3e-07 59.3 56 46.4
Nn1g03330 Nelumbo nucifera HOM05D004295 ORTHO05D004901 2.3e-07 59.3 51 56.9
QL08p007634 Quercus lobata HOM05D004295 ORTHO05D004901 2.3e-07 59.3 53 50.9
ClCG10G005040 Citrullus lanatus HOM05D004295 ORTHO05D004901 3.1e-07 58.9 48 50.0
Ciclev10007504m.g Citrus clementina HOM05D004295 ORTHO05D004901 3.1e-07 58.9 47 55.3
PSO302G0213 Papaver somniferum HOM05D004295 ORTHO05D004901 3.1e-07 58.9 52 53.8
Peaxi162Scf00235g00827 Petunia axillaris HOM05D004295 ORTHO05D004901 4.0e-07 58.5 50 52.0
MSTRG.6962 Avicennia marina HOM05D004295 ORTHO05D004901 6.8e-07 57.8 50 54.0
TAR629G3495 Trochodendron aralioides HOM05D004295 ORTHO05D004901 6.8e-07 57.8 50 56.0
Aqoxy1G04109 Aquilegia oxysepala HOM05D004295 ORTHO05D004901 8.9e-07 57.4 50 54.0
LjContig00272g0028044 Lotus japonicus HOM05D004295 ORTHO05D004901 8.9e-07 57.4 78 39.7
Sabra16G0236700 Salix brachista HOM05D004295 ORTHO05D004901 8.9e-07 57.4 51 54.9
PSO210G5678 Papaver somniferum HOM05D004295 ORTHO05D004901 1.2e-06 57.0 51 52.9
BcaB05g23234 Brassica carinata HOM05D005584 ORTHO05D006809 1.5e-06 56.6 27 100.0
Glyma.02G295400 Glycine max HOM05D004295 ORTHO05D004901 1.5e-06 56.6 78 37.2
Peaxi162Scf00339g01131 Petunia axillaris HOM05D004295 ORTHO05D004901 1.5e-06 56.6 50 52.0
Thecc.07G027600 Theobroma cacao HOM05D004295 ORTHO05D004901 1.5e-06 56.6 45 55.6
unitig_62.g23290 Utricularia gibba HOM05D004295 ORTHO05D004901 2.0e-06 56.2 50 52.0
Dinv22227 Davidia involucrata HOM05D004295 ORTHO05D004901 2.6e-06 55.8 50 54.0
TAR724G0001 Trochodendron aralioides HOM05D004295 ORTHO05D004901 2.6e-06 55.8 52 55.8
Actinidia10753 Actinidia chinensis HOM05D004295 ORTHO05D004901 3.4e-06 55.5 50 50.0
Cfa020273 Carpinus fangiana HOM05D004295 ORTHO05D004901 3.4e-06 55.5 44 54.5
Nitab4.5_0005221g0010 Nicotiana tabacum HOM05D004295 ORTHO05D004901 3.4e-06 55.5 50 50.0
DCAR_013201 Daucus carota HOM05D004295 ORTHO05D004901 4.4e-06 55.1 48 52.1
Lj1A881T81 Lonicera japonica HOM05D004295 ORTHO05D004901 4.4e-06 55.1 48 50.0
RcHm_v2.0_Chr5g0041571 Rosa chinensis HOM05D004295 ORTHO05D004901 4.4e-06 55.1 53 47.2
MELO3C014171.2 Cucumis melo HOM05D004295 ORTHO05D004901 5.8e-06 54.7 48 47.9
CsaV3_3G004720 Cucumis sativus L. HOM05D004295 ORTHO05D004901 7.6e-06 54.3 48 47.9
Oeu005986.1 Olea europaea HOM05D004295 ORTHO05D004901 7.6e-06 54.3 50 50.0
Solyc07g065000.3 Solanum lycopersicum HOM05D004295 ORTHO05D004901 7.6e-06 54.3 50 50.0
PGSC0003DMG402022202 Solanum tuberosum HOM05D004295 ORTHO05D004901 7.6e-06 54.3 50 50.0
Dinv40798 Davidia involucrata HOM05D004295 ORTHO05D004901 9.9e-06 53.9 48 54.2
Sed0002209 Sechium edule HOM05D004295 ORTHO05D004901 9.9e-06 53.9 48 50.0
Sopen12g007410 Solanum pennellii HOM05D004295 ORTHO05D004901 9.9e-06 53.9 50 50.0


User provided reference genes

Program Settings