Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB07g30508 Brassica carinata HOM05D002102 ORTHO05D008242 3.1e-132 475.3 277 100.0
Sp2g09460 Schrenkiella parvula HOM05D002102 ORTHO05D008242 2.4e-108 396.0 285 87.7
BcaC06g31600 Brassica carinata HOM05D002102 ORTHO05D008242 4.6e-107 391.7 280 84.3
A06p47030 Brassica napus HOM05D002102 ORTHO05D008242 1.1e-103 380.6 279 86.0
C07p27540 Brassica napus HOM05D002102 ORTHO05D008242 1.1e-103 380.6 279 86.0
BolC7t43285H Brassica oleracea HOM05D002102 ORTHO05D008242 1.1e-103 380.6 279 86.0
Thhalv10000983m.g Eutrema salsugineum HOM05D002102 ORTHO05D008242 1.1e-103 380.6 291 83.5
BcaC06g34527 Brassica carinata HOM05D002102 ORTHO05D008242 4.0e-103 378.6 279 85.3
BraA06t27576Z Brassica rapa HOM05D002102 ORTHO05D008242 4.1e-100 368.6 299 80.3
CARHR178230 Cardamine hirsuta HOM05D002102 ORTHO05D008242 2.2e-93 346.3 283 71.4
AT5G44650 Arabidopsis thaliana HOM05D002102 ORTHO05D008242 2.4e-92 342.8 283 73.5
AL8G14900 Arabidopsis lyrata HOM05D002102 ORTHO05D008242 5.4e-92 341.7 284 76.4
Carub.0008s0361 Capsella rubella HOM05D002102 ORTHO05D008242 1.7e-90 336.7 289 74.4
Aa31LG9G8520 Aethionema arabicum HOM05D002102 ORTHO05D008242 4.6e-83 312.0 274 74.5
QL11p010809 Quercus lobata HOM05D002102 ORTHO05D008242 1.2e-67 260.8 181 75.7
CANSAT35G0655 Cannabis sativa HOM05D002102 ORTHO05D008242 3.3e-65 252.7 182 73.1
Eucgr.E03887 Eucalyptus grandis HOM05D002102 ORTHO05D008242 5.7e-65 251.9 182 74.2
Peaxi162Scf00313g00048 Petunia axillaris HOM05D002102 ORTHO05D008242 5.7e-65 251.9 180 74.4
arahy.Tifrunner.gnm1.ann1.1TYS6L Arachis hypogaea HOM05D002102 ORTHO05D008242 7.4e-65 251.5 179 75.4
arahy.Tifrunner.gnm1.ann1.N8G6CJ Arachis hypogaea HOM05D002102 ORTHO05D008242 9.6e-65 251.1 179 74.3
Cpa.g.sc30.78 Carica papaya HOM05D002102 ORTHO05D008242 1.6e-64 250.4 229 60.3
CiPaw.09G140600 Carya illinoinensis HOM05D002102 ORTHO05D008242 2.8e-64 249.6 180 72.8
HanXRQChr09g0257721 Helianthus annuus HOM05D002102 ORTHO05D008242 8.2e-64 248.1 178 74.2
GSVIVG01037088001 Vitis vinifera HOM05D002102 ORTHO05D008242 1.1e-63 247.7 179 72.6
CSS0016773 Camellia sinensis var. sinensis HOM05D002102 ORTHO05D008242 1.8e-63 246.9 184 69.6
Manes.03G073000 Manihot esculenta HOM05D002102 ORTHO05D008242 2.4e-63 246.5 179 70.9
Gohir.D02G240400 Gossypium hirsutum HOM05D002102 ORTHO05D008242 3.1e-63 246.1 180 72.8
Lsat_1_v5_gn_8_106940 Lactuca sativa HOM05D002102 ORTHO05D008242 3.1e-63 246.1 184 69.0
Oeu023527.1 Olea europaea HOM05D002102 ORTHO05D008242 3.1e-63 246.1 186 69.4
Sed0010823 Sechium edule HOM05D002102 ORTHO05D008242 3.1e-63 246.1 182 70.3
Ciclev10016300m.g Citrus clementina HOM05D002102 ORTHO05D008242 4.1e-63 245.7 179 72.1
Gorai.005G268700 Gossypium raimondii HOM05D002102 ORTHO05D008242 4.1e-63 245.7 180 72.8
TWI63G1577 Tripterygium wilfordii HOM05D002102 ORTHO05D008242 4.1e-63 245.7 179 70.9
Gohir.A03G218300 Gossypium hirsutum HOM05D002102 ORTHO05D008242 2.0e-62 243.4 180 72.2
Actinidia34700 Actinidia chinensis HOM05D002102 ORTHO05D008242 3.4e-62 242.7 184 68.5
CsaV3_6G053190 Cucumis sativus L. HOM05D002102 ORTHO05D008242 3.4e-62 242.7 180 68.9
Glyma.16G094300 Glycine max HOM05D002102 ORTHO05D008242 3.4e-62 242.7 184 70.7
Thecc.02G001200 Theobroma cacao HOM05D002102 ORTHO05D008242 3.4e-62 242.7 177 71.8
MELO3C006996.2 Cucumis melo HOM05D002102 ORTHO05D008242 4.5e-62 242.3 180 68.9
PGSC0003DMG402011260 Solanum tuberosum HOM05D002102 ORTHO05D008242 4.5e-62 242.3 184 69.6
Potri.001G074200 Populus trichocarpa HOM05D002102 ORTHO05D008242 5.9e-62 241.9 179 70.9
Phvul.003G275400 Phaseolus vulgaris HOM05D002102 ORTHO05D008242 1.0e-61 241.1 185 70.3
Aqoxy1G01357 Aquilegia oxysepala HOM05D002102 ORTHO05D008242 1.3e-61 240.7 186 68.8
Ca_22534_v3 Cicer arietinum L. HOM05D002102 ORTHO05D008242 2.2e-61 240.0 182 71.4
Nn7g38425 Nelumbo nucifera HOM05D002102 ORTHO05D008242 2.9e-61 239.6 179 69.3
PGR004G2223 Punica granatum HOM05D002102 ORTHO05D008242 2.9e-61 239.6 180 67.8
TAR627G1208 Trochodendron aralioides HOM05D002102 ORTHO05D008242 2.9e-61 239.6 180 70.0
Cc09_g04620 Coffea canephora HOM05D002102 ORTHO05D008242 3.8e-61 239.2 183 71.0
Lj4g0016411 Lotus japonicus HOM05D002102 ORTHO05D008242 5.0e-61 238.8 179 69.8
Solyc10g005180.3 Solanum lycopersicum HOM05D002102 ORTHO05D008242 5.0e-61 238.8 180 70.0
Medtr8g070680 Medicago truncatula HOM05D002102 ORTHO05D008242 6.5e-61 238.4 180 73.9
Sabra01G0052500 Salix brachista HOM05D002102 ORTHO05D008242 8.5e-61 238.0 179 70.4
Nitab4.5_0002246g0020 Nicotiana tabacum HOM05D002102 ORTHO05D008242 1.4e-60 237.3 182 70.3
Glyma.08G267700 Glycine max HOM05D002102 ORTHO05D008242 1.9e-60 236.9 182 69.2
Lalb_Chr21g0315091 Lupinus albus HOM05D002102 ORTHO05D008242 2.5e-60 236.5 184 67.9
EL10Ac4g09967 Beta vulgaris HOM05D002102 ORTHO05D008242 7.2e-60 235.0 275 50.9
RcHm_v2.0_Chr5g0021821 Rosa chinensis HOM05D002102 ORTHO05D008242 1.6e-59 233.8 181 69.1
TPR.G19825 Trifolium pratense HOM05D002102 ORTHO05D008242 1.6e-59 233.8 182 69.8
FvH4_3g13341 Fragaria vesca HOM05D002102 ORTHO05D008242 2.1e-59 233.4 181 69.1
Rhsim02G0171500 Rhododendron simsii HOM05D002102 ORTHO05D008242 3.6e-59 232.6 181 69.1
MD10G1224400 Malus domestica HOM05D002102 ORTHO05D008242 6.1e-59 231.9 186 66.7
vmacro11020 Vaccinium macrocarpon HOM05D002102 ORTHO05D008242 1.8e-58 230.3 204 62.3
Haze_05188 Corylus avellana HOM05D002102 ORTHO05D008242 8.7e-58 228.0 228 58.3
Os01g0798500 Oryza sativa ssp. japonica HOM05D002102 ORTHO05D008242 1.6e-56 223.8 184 64.1
Zm00001eb150810 Zea mays HOM05D002102 ORTHO05D008242 4.8e-56 222.2 259 51.7
COL.COLO4_25027 Corchorus olitorius HOM05D002102 ORTHO05D008242 6.3e-56 221.9 153 73.2
PSO675G4370 Papaver somniferum HOM05D002102 ORTHO05D008242 1.8e-55 220.3 182 61.5
PSO170G6365 Papaver somniferum HOM05D002102 ORTHO05D008242 2.4e-55 219.9 182 61.5
Prupe.4G120800 Prunus persica HOM05D002102 ORTHO05D008242 3.1e-55 219.5 182 65.4
Psat0s2609g0120 Pisum sativum HOM05D002102 ORTHO05D008242 6.9e-55 218.4 171 66.7
FAN25G3128 Fragaria x ananassa HOM05D002102 ORTHO05D008242 2.6e-54 216.5 170 67.6
Ah.06g191610 Amaranthus hybridus HOM05D002851 ORTHO05D003084 5.9e-54 215.3 180 67.8
FAN11G2372 Fragaria x ananassa HOM05D002102 ORTHO05D008242 5.9e-54 215.3 170 67.1
FAN16G2960 Fragaria x ananassa HOM05D002102 ORTHO05D008242 7.7e-54 214.9 170 67.1
ECA232G0416 Erigeron canadensis HOM05D002102 ORTHO05D008242 2.2e-53 213.4 169 62.1
ClCG01G025950 Citrullus lanatus HOM05D002102 ORTHO05D008242 4.2e-52 209.1 165 66.1
PGSC0003DMG401011260 Solanum tuberosum HOM05D002102 ORTHO05D008242 4.2e-52 209.1 157 70.7
Migut.M02036 Erythranthe guttata HOM05D002102 ORTHO05D008242 5.5e-52 208.8 167 66.5
unitig_92.g28193 Utricularia gibba HOM05D002594 ORTHO05D003499 9.4e-52 208.0 171 64.9
Sc24g0002820 Simmondsia chinensis HOM05D002102 ORTHO05D008242 6.7e-50 201.8 144 72.2
Atru.chr10.236 Acer truncatum HOM05D002102 ORTHO05D008242 1.1e-49 201.1 140 70.0
Sopen10g001170 Solanum pennellii HOM05D002102 ORTHO05D008242 1.5e-49 200.7 143 69.9
Dinv17885 Davidia involucrata HOM05D002102 ORTHO05D008242 1.4e-47 194.1 148 66.2
CDE11G0809 Ceratophyllum demersum HOM05D002102 ORTHO05D008242 2.4e-47 193.4 167 61.1
Nitab4.5_0001299g0100 Nicotiana tabacum HOM05D002102 ORTHO05D008242 7.7e-46 188.3 140 67.9
Lj1A1152G38 Lonicera japonica HOM05D002102 ORTHO05D008242 3.8e-45 186.0 149 67.8
DCAR_001256 Daucus carota HOM05D002102 ORTHO05D008242 1.1e-44 184.5 128 70.3
HPP92_001585 Vanilla planifolia HOM05D002102 ORTHO05D008242 2.6e-41 173.3 156 59.0
Pp3c15_7910 Physcomitrium patens HOM05D002102 ORTHO05D008242 5.7e-41 172.2 180 53.3
Mapoly0033s0150 Marchantia polymorpha HOM05D002102 ORTHO05D008242 1.1e-39 167.9 186 53.8
PSO541G0118 Papaver somniferum HOM05D002102 ORTHO05D008242 1.4e-39 167.5 182 52.7
C02p45240 Brassica napus HOM05D002102 ORTHO05D008242 2.4e-39 166.8 147 68.7
FAN21G2948 Fragaria x ananassa HOM05D002102 ORTHO05D008242 2.6e-38 163.3 168 55.4
BolC2t10554H Brassica oleracea HOM05D002102 ORTHO05D008242 2.9e-37 159.8 147 68.0
AUR62040994 Chenopodium quinoa HOM05D002102 ORTHO05D008242 9.4e-36 154.8 143 60.8
Duzib132G0691 Durio zibethinus HOM05D002102 ORTHO05D008242 1.6e-35 154.1 139 59.7
SGA_v2.0_scaffold423G51451 Striga asiatica HOM05D002102 ORTHO05D008242 3.6e-35 152.9 182 49.5
MBI02_g17886_MAGBIO Magnolia biondii HOM05D002102 ORTHO05D008242 8.0e-35 151.8 173 53.8
AUR62042810 Chenopodium quinoa HOM05D002102 ORTHO05D008242 1.8e-34 150.6 114 68.4
A02p28510 Brassica napus HOM05D002102 ORTHO05D008242 5.7e-33 145.6 284 43.0
AagrBONN_evm.TU.Sc2ySwM_368.1584 Anthoceros agrestis HOM05D002102 ORTHO05D008242 1.2e-30 137.9 159 49.7
BraA02t07887Z Brassica rapa HOM05D002102 ORTHO05D008242 3.8e-29 132.9 116 68.1
ATR0073G005 Amborella trichopoda HOM05D002102 ORTHO05D008242 2.5e-28 130.2 162 48.8
Oeu011782.1 Olea europaea HOM05D002102 ORTHO05D008242 1.4e-26 124.4 131 54.2
HPP92_001768 Vanilla planifolia HOM05D001389 ORTHO05D002892 8.8e-26 121.7 100 56.0
RcHm_v2.0_Chr5g0021891 Rosa chinensis HOM05D002102 ORTHO05D008242 1.5e-25 120.9 85 69.4
MD05G1242700 Malus domestica HOM05D002102 ORTHO05D004119 5.7e-25 119.0 105 59.0
Actinidia31357 Actinidia chinensis HOM05D002102 ORTHO05D008242 9.1e-23 111.7 87 73.6
SEGI_24162 Sequoiadendron giganteum HOM05D002102 ORTHO05D008242 1.2e-22 111.3 97 58.8
RcHm_v2.0_Chr5g0021971 Rosa chinensis HOM05D002102 ORTHO05D008242 1.6e-22 110.9 74 74.3
Eucgr.L03440 Eucalyptus grandis HOM05D002102 ORTHO05D008242 4.5e-22 109.4 69 78.3
BcaC03g16684 Brassica carinata HOM05D002102 ORTHO05D008242 7.7e-22 108.6 73 86.3
Hund01844 Selenicereus undatus HOM05D002102 ORTHO05D008242 5.0e-21 105.9 66 78.8
Cre06.g280650 Chlamydomonas reinhardtii HOM05D002102 ORTHO05D008242 6.5e-21 105.5 192 38.0
CBR_g21832 Chara braunii HOM05D002102 ORTHO05D008242 3.2e-20 103.2 184 42.4
MD05G1242600 Malus domestica HOM05D002102 ORTHO05D008242 4.1e-15 86.3 66 68.2
ATR0109G022 Amborella trichopoda HOM05D002102 ORTHO05D008242 5.4e-15 85.9 87 57.5
Actinidia31356 Actinidia chinensis HOM05D002102 ORTHO05D008242 5.9e-14 82.4 58 70.7
RcHm_v2.0_Chr5g0021961 Rosa chinensis HOM05D002102 ORTHO05D008242 7.3e-12 75.5 58 62.1
RcHm_v2.0_Chr5g0021881 Rosa chinensis HOM05D002102 ORTHO05D008242 7.5e-09 65.5 50 60.0
RcHm_v2.0_Chr5g0021951 Rosa chinensis HOM05D002102 ORTHO05D008242 2.9e-08 63.5 48 62.5
Nitab4.5_0007687g0040 Nicotiana tabacum HOM05D002102 ORTHO05D008242 4.9e-08 62.8 43 65.1
Nitab4.5_0001815g0140 Nicotiana tabacum HOM05D002102 ORTHO05D004119 8.3e-08 62.0 107 35.5


User provided reference genes

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