Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB07g30213 Brassica carinata HOM05D005554 ORTHO05D021652 8.9e-69 263.5 132 100.0
BcaB06g26524 Brassica carinata HOM05D005554 ORTHO05D021652 6.7e-32 141.0 171 52.6
BcaC06g33105 Brassica carinata HOM05D005554 ORTHO05D021652 1.7e-27 126.3 182 51.6
BcaB04g18522 Brassica carinata HOM05D005554 ORTHO05D021652 5.5e-18 94.7 121 50.4
BolC9t54561H Brassica oleracea HOM05D005554 ORTHO05D007823 8.0e-17 90.9 71 69.0
BraA09t37033Z Brassica rapa HOM05D005554 ORTHO05D007823 8.0e-17 90.9 71 69.0
Carub.0002s0117 Capsella rubella HOM05D005554 ORTHO05D007823 1.4e-16 90.1 72 69.4
Thhalv10023292m.g Eutrema salsugineum HOM05D005554 ORTHO05D007823 1.4e-16 90.1 75 68.0
AL2G11550 Arabidopsis lyrata HOM05D005554 ORTHO05D007823 1.8e-16 89.7 72 69.4
A09p13810 Brassica napus HOM05D005554 ORTHO05D007823 1.8e-16 89.7 71 67.6
BcaC04g22690 Brassica carinata HOM05D005554 ORTHO05D007823 2.3e-16 89.4 71 67.6
C09p16520 Brassica napus HOM05D005554 ORTHO05D007823 2.3e-16 89.4 71 67.6
CARHR047660 Cardamine hirsuta HOM05D005554 ORTHO05D007823 5.2e-16 88.2 72 68.1
Sp2g00970 Schrenkiella parvula HOM05D005554 ORTHO05D007823 5.2e-16 88.2 75 65.3
BcaB07g31556 Brassica carinata HOM05D005554 ORTHO05D007823 6.7e-16 87.8 72 68.1
Aa31LG2G890 Aethionema arabicum HOM05D005554 ORTHO05D007823 2.6e-15 85.9 75 66.7
AT1G63680 Arabidopsis thaliana HOM05D005554 ORTHO05D007823 5.7e-15 84.7 70 65.7
THA.LOC104823588 Tarenaya hassleriana HOM05D005554 ORTHO05D007823 4.8e-14 81.6 75 64.0
BcaB04g17698 Brassica carinata HOM05D003513 ORTHO05D004660 6.3e-14 81.3 58 74.1
Thecc.03G279900 Theobroma cacao HOM05D005554 ORTHO05D007823 1.4e-13 80.1 75 61.3
COL.COLO4_34475 Corchorus olitorius HOM05D005554 ORTHO05D007823 1.8e-13 79.7 75 60.0
Lj4g0004686 Lotus japonicus HOM05D005554 ORTHO05D007823 1.8e-13 79.7 72 63.9
BcaB07g32937 Brassica carinata HOM05D003513 ORTHO05D004660 2.4e-13 79.3 47 85.1
Gohir.A12G229900 Gossypium hirsutum HOM05D005554 ORTHO05D007823 2.4e-13 79.3 76 60.5
QL12p032791 Quercus lobata HOM05D005554 ORTHO05D007823 2.4e-13 79.3 74 62.2
Gohir.D12G231000 Gossypium hirsutum HOM05D005554 ORTHO05D007823 3.1e-13 79.0 75 60.0
Gorai.008G247200 Gossypium raimondii HOM05D005554 ORTHO05D007823 3.1e-13 79.0 75 60.0
Lalb_Chr05g0224711 Lupinus albus HOM05D005554 ORTHO05D007823 3.1e-13 79.0 74 60.8
Atru.chr9.2175 Acer truncatum HOM05D005554 ORTHO05D007823 4.1e-13 78.6 74 60.8
CANSAT21G2493 Cannabis sativa HOM05D005554 ORTHO05D007823 4.1e-13 78.6 74 62.2
Ciclev10018956m.g Citrus clementina HOM05D005554 ORTHO05D007823 4.1e-13 78.6 74 60.8
TWI15G0555 Tripterygium wilfordii HOM05D005554 ORTHO05D007823 4.1e-13 78.6 76 59.2
arahy.Tifrunner.gnm1.ann1.C4WXPV Arachis hypogaea HOM05D005554 ORTHO05D007823 9.1e-13 77.4 74 60.8
arahy.Tifrunner.gnm1.ann1.CVD0A8 Arachis hypogaea HOM05D005554 ORTHO05D007823 9.1e-13 77.4 74 60.8
BcaB02g08136 Brassica carinata HOM05D003513 ORTHO05D004660 9.1e-13 77.4 45 88.9
Duzib205G0518 Durio zibethinus HOM05D005554 ORTHO05D007823 9.1e-13 77.4 75 60.0
Solyc08g081170.4 Solanum lycopersicum HOM05D005554 ORTHO05D007823 9.1e-13 77.4 74 60.8
Sopen08g029470 Solanum pennellii HOM05D005554 ORTHO05D007823 9.1e-13 77.4 74 60.8
PGSC0003DMG402012338 Solanum tuberosum HOM05D005554 ORTHO05D007823 9.1e-13 77.4 74 60.8
Cpa.g.sc74.56 Carica papaya HOM05D005554 ORTHO05D007823 1.2e-12 77.0 74 59.5
Cfa012222 Carpinus fangiana HOM05D005554 ORTHO05D007823 1.2e-12 77.0 74 59.5
Nn6g33413 Nelumbo nucifera HOM05D005554 ORTHO05D007823 1.2e-12 77.0 74 59.5
CAN.G774.53 Capsicum annuum HOM05D005554 ORTHO05D007823 1.6e-12 76.6 74 60.8
CiPaw.12G092300 Carya illinoinensis HOM05D005554 ORTHO05D007823 1.6e-12 76.6 74 59.5
Eucgr.D01840 Eucalyptus grandis HOM05D005554 ORTHO05D007823 1.6e-12 76.6 74 59.5
TPR.G12960 Trifolium pratense HOM05D005554 ORTHO05D007823 2.0e-12 76.3 74 59.5
Haze_08788 Corylus avellana HOM05D005554 ORTHO05D007823 2.6e-12 75.9 74 58.1
Potri.001G103300 Populus trichocarpa HOM05D005554 ORTHO05D007823 2.6e-12 75.9 75 60.0
Prupe.5G101100 Prunus persica HOM05D005554 ORTHO05D007823 2.6e-12 75.9 74 59.5
TAR375G0921 Trochodendron aralioides HOM05D005554 ORTHO05D007823 2.6e-12 75.9 74 58.1
DCAR_000617 Daucus carota HOM05D005554 ORTHO05D007823 3.5e-12 75.5 74 56.8
FAN08G3292 Fragaria x ananassa HOM05D005554 ORTHO05D007823 3.5e-12 75.5 74 60.8
Nitab4.5_0001615g0110 Nicotiana tabacum HOM05D005554 ORTHO05D007823 3.5e-12 75.5 74 59.5
RcHm_v2.0_Chr7g0197491 Rosa chinensis HOM05D005554 ORTHO05D007823 3.5e-12 75.5 74 60.8
SalBow1G4020 Salvia bowleyana HOM05D005554 ORTHO05D007823 3.5e-12 75.5 74 58.1
ClCG01G002630 Citrullus lanatus HOM05D005554 ORTHO05D007823 4.5e-12 75.1 75 57.3
FvH4_5g02610 Fragaria vesca HOM05D005554 ORTHO05D007823 4.5e-12 75.1 44 84.1
FAN18G3000 Fragaria x ananassa HOM05D005554 ORTHO05D007823 4.5e-12 75.1 44 84.1
Peaxi162Scf00119g01015 Petunia axillaris HOM05D005554 ORTHO05D007823 4.5e-12 75.1 74 59.5
Sed0016596 Sechium edule HOM05D005554 ORTHO05D007823 4.5e-12 75.1 75 57.3
Lj2C0T9 Lonicera japonica HOM05D005554 ORTHO05D007823 5.9e-12 74.7 74 56.8
Lj2C185T6 Lonicera japonica HOM05D005554 ORTHO05D007823 5.9e-12 74.7 74 56.8
Nitab4.5_0010813g0010 Nicotiana tabacum HOM05D005554 ORTHO05D007823 5.9e-12 74.7 74 58.1
Sabra01G0078000 Salix brachista HOM05D005554 ORTHO05D007823 5.9e-12 74.7 75 58.7
A05p21550 Brassica napus HOM05D003513 ORTHO05D004660 7.7e-12 74.3 54 72.2
BraA05t21075Z Brassica rapa HOM05D003513 ORTHO05D004660 7.7e-12 74.3 54 72.2
Cc08_g14820 Coffea canephora HOM05D005554 ORTHO05D007823 7.7e-12 74.3 74 58.1
FAN04G0002 Fragaria x ananassa HOM05D005554 ORTHO05D007823 7.7e-12 74.3 74 59.5
unitig_26.g9706 Utricularia gibba HOM05D005554 ORTHO05D007823 7.7e-12 74.3 74 59.5
Ca_17525_v3 Cicer arietinum L. HOM05D005554 ORTHO05D007823 1.0e-11 73.9 74 55.4
MELO3C005683.2 Cucumis melo HOM05D005554 ORTHO05D007823 1.0e-11 73.9 75 56.0
CsaV3_5G002730 Cucumis sativus L. HOM05D005554 ORTHO05D007823 1.0e-11 73.9 75 56.0
Medtr8g098345 Medicago truncatula HOM05D005554 ORTHO05D007823 1.0e-11 73.9 74 56.8
PGR031G2745 Punica granatum HOM05D005554 ORTHO05D007823 1.0e-11 73.9 74 58.1
Sc01g0009640 Simmondsia chinensis HOM05D005554 ORTHO05D007823 1.0e-11 73.9 75 56.0
FAN13G2706 Fragaria x ananassa HOM05D005554 ORTHO05D007823 1.3e-11 73.6 74 59.5
Aqoxy7G00299 Aquilegia oxysepala HOM05D005554 ORTHO05D007823 1.7e-11 73.2 74 55.4
EL10Ac6g14928 Beta vulgaris HOM05D005554 ORTHO05D007823 1.7e-11 73.2 77 54.5
Glyma.08G015200 Glycine max HOM05D005554 ORTHO05D007823 1.7e-11 73.2 75 57.3
MD06G1085100 Malus domestica HOM05D005554 ORTHO05D007823 1.7e-11 73.2 74 56.8
PSO478G3044 Papaver somniferum HOM05D005554 ORTHO05D007823 1.7e-11 73.2 74 55.4
CDE05G1777 Ceratophyllum demersum HOM05D005554 ORTHO05D007823 2.2e-11 72.8 75 53.3
Gorai.003G158300 Gossypium raimondii HOM05D005554 ORTHO05D007823 2.2e-11 72.8 75 54.7
MSTRG.13839 Avicennia marina HOM05D005554 ORTHO05D007823 2.9e-11 72.4 74 56.8
MBI18_g45367_MAGBIO Magnolia biondii HOM05D005554 ORTHO05D007823 2.9e-11 72.4 74 56.8
BcaB05g23799 Brassica carinata HOM05D003513 ORTHO05D004660 3.8e-11 72.0 47 78.7
CSS0044545 Camellia sinensis var. sinensis HOM05D005554 ORTHO05D007823 5.0e-11 71.6 74 54.1
Hma1.2p1_0377F.1_g139310 Hydrangea macrophylla HOM05D005554 ORTHO05D007823 5.0e-11 71.6 74 55.4
Manes.02G019800 Manihot esculenta HOM05D005554 ORTHO05D007823 5.0e-11 71.6 73 57.5
Phvul.002G290300 Phaseolus vulgaris HOM05D005554 ORTHO05D007823 5.0e-11 71.6 75 57.3
VMungo0251G0638 Vigna mungo HOM05D005554 ORTHO05D007823 5.0e-11 71.6 75 57.3
Glyma.05G208600 Glycine max HOM05D005554 ORTHO05D007823 6.5e-11 71.2 75 56.0
Glyma.05G208921 Glycine max HOM05D005554 ORTHO05D007823 6.5e-11 71.2 75 56.0
PSO782G1990 Papaver somniferum HOM05D005554 ORTHO05D007823 6.5e-11 71.2 74 54.1
Psat7g032760 Pisum sativum HOM05D005554 ORTHO05D007823 6.5e-11 71.2 74 54.1
Ah.10g034840 Amaranthus hybridus HOM05D005554 ORTHO05D007823 8.5e-11 70.9 83 51.8
Oeu064085.1 Olea europaea HOM05D005554 ORTHO05D007823 8.5e-11 70.9 74 55.4
AUR62007990 Chenopodium quinoa HOM05D005554 ORTHO05D007823 1.1e-10 70.5 77 51.9
Dinv38934 Davidia involucrata HOM05D005554 ORTHO05D007823 1.1e-10 70.5 74 56.8
Migut.E01089 Erythranthe guttata HOM05D005554 ORTHO05D007823 1.1e-10 70.5 74 55.4
AUR62003173 Chenopodium quinoa HOM05D005554 ORTHO05D007823 1.9e-10 69.7 77 51.9
Gohir.A03G016800 Gossypium hirsutum HOM05D005554 ORTHO05D007823 1.9e-10 69.7 74 52.7
SGA_v2.0_scaffold144G35937 Striga asiatica HOM05D005554 ORTHO05D007823 1.9e-10 69.7 74 54.1
Lsat_1_v5_gn_3_6620 Lactuca sativa HOM05D005554 ORTHO05D007823 2.5e-10 69.3 75 56.0
HanXRQChr06g0165871 Helianthus annuus HOM05D005554 ORTHO05D007823 3.2e-10 68.9 75 54.7
HPP92_008493 Vanilla planifolia HOM05D005554 ORTHO05D007823 3.2e-10 68.9 74 52.7
Actinidia14567 Actinidia chinensis HOM05D005554 ORTHO05D007823 4.2e-10 68.6 74 51.4
C03p42610 Brassica napus HOM05D003513 ORTHO05D004660 5.5e-10 68.2 41 78.0
Hund14815 Selenicereus undatus HOM05D005554 ORTHO05D007823 5.5e-10 68.2 75 52.0
ECA246G2370 Erigeron canadensis HOM05D005554 ORTHO05D007823 1.2e-09 67.0 74 52.7
BolC3t16531H Brassica oleracea HOM05D003513 ORTHO05D004660 1.6e-09 66.6 41 78.0
BolC8t52234H Brassica oleracea HOM05D003513 ORTHO05D004660 1.6e-09 66.6 40 82.5
A04p04130 Brassica napus HOM05D003513 ORTHO05D004660 2.1e-09 66.2 82 50.0
C08p46960 Brassica napus HOM05D003513 ORTHO05D013524 2.1e-09 66.2 38 86.8
vmacro11364 Vaccinium macrocarpon HOM05D005554 ORTHO05D007823 2.7e-09 65.9 75 53.3
BraA03t12683Z Brassica rapa HOM05D003513 ORTHO05D004660 3.6e-09 65.5 41 75.6
BcaC08g44431 Brassica carinata HOM05D003513 ORTHO05D013524 4.7e-09 65.1 48 68.8
A03p35030 Brassica napus HOM05D003513 ORTHO05D004660 4.7e-09 65.1 39 79.5
A04p12810 Brassica napus HOM05D003513 ORTHO05D013524 8.0e-09 64.3 46 69.6
A06p18750 Brassica napus HOM05D003513 ORTHO05D013524 8.0e-09 64.3 46 69.6
A06p48950 Brassica napus HOM05D003513 ORTHO05D013524 8.0e-09 64.3 46 69.6
A07p17600 Brassica napus HOM05D003513 ORTHO05D013524 8.0e-09 64.3 46 69.6
BraA04t16944Z Brassica rapa HOM05D003513 ORTHO05D013524 8.0e-09 64.3 46 69.6
A03p63010 Brassica napus HOM05D003513 ORTHO05D013524 1.0e-08 63.9 46 69.6
C07p28040 Brassica napus HOM05D003513 ORTHO05D013524 1.0e-08 63.9 46 69.6
BraA03t15374Z Brassica rapa HOM05D003513 ORTHO05D004660 1.0e-08 63.9 46 69.6
ATR0680G162 Amborella trichopoda HOM05D005554 ORTHO05D007823 4.0e-08 62.0 76 50.0
Sp3g05980 Schrenkiella parvula HOM05D003513 ORTHO05D004660 8.8e-08 60.8 38 76.3
A09p29610 Brassica napus HOM05D003513 ORTHO05D004660 1.2e-07 60.5 46 67.4
Thhalv10021452m.g Eutrema salsugineum HOM05D003513 ORTHO05D004660 1.2e-07 60.5 38 76.3
A05p38730 Brassica napus HOM05D000051 ORTHO05D033618 2.6e-07 59.3 40 77.5
AagrBONN_evm.TU.Sc2ySwM_228.1600 Anthoceros agrestis HOM05D005554 ORTHO05D007823 4.4e-07 58.5 42 64.3
Pp3c24_18820 Physcomitrium patens HOM05D005554 ORTHO05D007823 4.4e-07 58.5 73 45.2
Mapoly0091s0082 Marchantia polymorpha HOM05D005554 ORTHO05D007823 5.7e-07 58.2 40 65.0
Os10g0548900 Oryza sativa ssp. japonica HOM05D005554 ORTHO05D007823 9.7e-07 57.4 71 42.3


User provided reference genes

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