Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB07g30055 Brassica carinata HOM05D002267 ORTHO05D005902 3.0e-290 1001.1 500 100.0
BolC2t11669H Brassica oleracea HOM05D002267 ORTHO05D005902 1.1e-255 886.3 446 98.0
A02p37120 Brassica napus HOM05D002267 ORTHO05D005902 5.9e-254 880.6 446 97.3
C02p56120 Brassica napus HOM05D002267 ORTHO05D005902 4.2e-252 874.4 448 96.9
BraA02t08698Z Brassica rapa HOM05D002267 ORTHO05D005902 9.4e-252 873.2 454 95.6
BcaB07g30054 Brassica carinata HOM05D002267 ORTHO05D005902 1.8e-250 869.0 446 95.3
A06p39620 Brassica napus HOM05D002267 ORTHO05D005902 2.2e-245 852.0 452 91.8
BolC7t44387H Brassica oleracea HOM05D002267 ORTHO05D005902 2.9e-245 851.7 453 91.8
BraA06t26877Z Brassica rapa HOM05D002267 ORTHO05D005902 5.0e-245 850.9 452 91.6
C07p38670 Brassica napus HOM05D002267 ORTHO05D005902 1.1e-244 849.7 453 91.6
BcaC06g33731 Brassica carinata HOM05D002267 ORTHO05D005902 1.9e-244 849.0 446 93.3
Thhalv10004074m.g Eutrema salsugineum HOM05D002267 ORTHO05D005902 1.9e-244 849.0 446 93.0
Carub.0006s2794 Capsella rubella HOM05D002267 ORTHO05D005902 6.1e-243 844.0 445 92.8
AT3G30841 Arabidopsis thaliana HOM05D002267 ORTHO05D005902 3.0e-242 841.6 468 88.7
AL5G20480 Arabidopsis lyrata HOM05D002267 ORTHO05D005902 8.8e-242 840.1 446 91.9
CARHR260400 Cardamine hirsuta HOM05D002267 ORTHO05D005902 1.7e-240 835.9 459 89.3
AT4G09520 Arabidopsis thaliana HOM05D002267 ORTHO05D005902 4.1e-239 831.2 440 92.3
AL6G43080 Arabidopsis lyrata HOM05D002267 ORTHO05D005902 1.7e-237 825.9 433 92.6
Aa31LG2G3660 Aethionema arabicum HOM05D002267 ORTHO05D005902 8.8e-234 813.5 445 89.7
COL.COLO4_17522 Corchorus olitorius HOM05D002267 ORTHO05D005902 8.0e-227 790.4 444 85.6
Cpa.g.sc652.3 Carica papaya HOM05D002267 ORTHO05D005902 1.8e-226 789.3 437 86.7
THA.LOC104805546 Tarenaya hassleriana HOM05D002267 ORTHO05D005902 1.7e-224 782.7 455 85.3
Thecc.07G119800 Theobroma cacao HOM05D002267 ORTHO05D005902 2.8e-224 781.9 442 85.3
Duzib213G0616 Durio zibethinus HOM05D002267 ORTHO05D005902 2.4e-223 778.9 446 84.1
Gohir.D13G154300 Gossypium hirsutum HOM05D002267 ORTHO05D005902 4.5e-222 774.6 428 86.0
DCAR_007527 Daucus carota HOM05D002267 ORTHO05D005902 5.9e-222 774.2 434 84.1
Actinidia36296 Actinidia chinensis HOM05D002267 ORTHO05D005902 1.7e-221 772.7 424 85.6
AUR62014559 Chenopodium quinoa HOM05D002267 ORTHO05D005902 2.9e-221 771.9 435 84.4
Gorai.013G174300 Gossypium raimondii HOM05D002267 ORTHO05D005902 3.8e-221 771.5 428 85.7
AUR62008939 Chenopodium quinoa HOM05D002267 ORTHO05D005902 5.0e-221 771.2 426 85.9
Gorai.002G053200 Gossypium raimondii HOM05D002267 ORTHO05D005902 8.5e-221 770.4 446 83.2
EL10Ac2g04655 Beta vulgaris HOM05D002267 ORTHO05D005902 1.1e-220 770.0 438 85.2
Gohir.D01G042400 Gossypium hirsutum HOM05D002267 ORTHO05D005902 4.2e-220 768.1 446 83.0
Hund16106 Selenicereus undatus HOM05D002267 ORTHO05D005902 4.2e-220 768.1 434 84.3
Gohir.A13G150000 Gossypium hirsutum HOM05D002267 ORTHO05D005902 9.4e-220 766.9 444 82.9
Gohir.A01G052800 Gossypium hirsutum HOM05D002267 ORTHO05D005902 1.2e-219 766.5 446 82.7
Sp2g18250 Schrenkiella parvula HOM05D002267 ORTHO05D005902 1.2e-219 766.5 411 91.2
Atru.chr1.1114 Acer truncatum HOM05D002267 ORTHO05D005902 1.6e-219 766.1 458 81.0
Ah.10g037400 Amaranthus hybridus HOM05D002267 ORTHO05D005902 1.6e-219 766.1 426 85.7
Dinv34871 Davidia involucrata HOM05D002267 ORTHO05D005902 3.6e-219 765.0 431 84.2
FvH4_6g45710 Fragaria vesca HOM05D002267 ORTHO05D005902 1.0e-218 763.5 449 82.4
Sopen06g001330 Solanum pennellii HOM05D002267 ORTHO05D005902 2.3e-218 762.3 437 83.3
vmacro05590 Vaccinium macrocarpon HOM05D002267 ORTHO05D005902 2.3e-218 762.3 437 83.5
CsaV3_5G038940 Cucumis sativus L. HOM05D002267 ORTHO05D005902 3.0e-218 761.9 441 83.9
Nitab4.5_0011661g0010 Nicotiana tabacum HOM05D002267 ORTHO05D005902 5.2e-218 761.1 437 83.1
PGR042G2823 Punica granatum HOM05D002267 ORTHO05D005902 5.2e-218 761.1 426 85.2
MELO3C022075.2 Cucumis melo HOM05D002267 ORTHO05D005902 6.8e-218 760.8 427 85.2
PSO541G0287 Papaver somniferum HOM05D002267 ORTHO05D005902 6.8e-218 760.8 439 82.0
ClCG11G005190 Citrullus lanatus HOM05D002267 ORTHO05D005902 8.8e-218 760.4 427 85.0
Ciclev10011558m.g Citrus clementina HOM05D002267 ORTHO05D005902 8.8e-218 760.4 439 83.1
Sed0022523 Sechium edule HOM05D002267 ORTHO05D005902 1.2e-217 760.0 427 84.5
HanXRQChr17g0559871 Helianthus annuus HOM05D002267 ORTHO05D005902 1.5e-217 759.6 447 81.4
Solyc06g005370.3 Solanum lycopersicum HOM05D002267 ORTHO05D005902 1.5e-217 759.6 426 84.3
Potri.017G109500 Populus trichocarpa HOM05D002267 ORTHO05D005902 2.0e-217 759.2 449 82.0
FAN14G5533 Fragaria x ananassa HOM05D002267 ORTHO05D005902 2.6e-217 758.8 441 82.8
CANSAT64G2636 Cannabis sativa HOM05D002267 ORTHO05D005902 4.4e-217 758.1 428 84.8
FAN09G4431 Fragaria x ananassa HOM05D002267 ORTHO05D005902 4.4e-217 758.1 441 82.8
Potri.004G106200 Populus trichocarpa HOM05D002267 ORTHO05D005902 4.4e-217 758.1 443 82.2
MD17G1071600 Malus domestica HOM05D002267 ORTHO05D005902 5.7e-217 757.7 442 82.1
PGSC0003DMG400003469 Solanum tuberosum HOM05D002267 ORTHO05D005902 1.7e-216 756.1 426 83.8
CiPaw.04G004900 Carya illinoinensis HOM05D002267 ORTHO05D005902 2.2e-216 755.7 426 83.3
SalBow1G1113 Salvia bowleyana HOM05D002267 ORTHO05D005902 2.2e-216 755.7 431 83.8
Aqoxy3G03816 Aquilegia oxysepala HOM05D002267 ORTHO05D005902 3.7e-216 755.0 426 84.0
MSTRG.15422 Avicennia marina HOM05D002267 ORTHO05D005902 3.7e-216 755.0 447 81.2
RcHm_v2.0_Chr2g0163861 Rosa chinensis HOM05D002267 ORTHO05D005902 8.3e-216 753.8 439 82.9
Cfa007986 Carpinus fangiana HOM05D002267 ORTHO05D005902 1.1e-215 753.4 435 81.6
QL02p053833 Quercus lobata HOM05D002267 ORTHO05D005902 1.1e-215 753.4 425 82.8
SGA_v2.0_scaffold62G21549 Striga asiatica HOM05D002267 ORTHO05D005902 2.4e-215 752.3 432 83.8
TAR629G0265 Trochodendron aralioides HOM05D002267 ORTHO05D005902 3.1e-215 751.9 437 81.9
ECA238G0812 Erigeron canadensis HOM05D002267 ORTHO05D005902 4.1e-215 751.5 442 81.9
FAN26G1557 Fragaria x ananassa HOM05D002267 ORTHO05D005902 4.1e-215 751.5 441 81.6
Sabra04G0076200 Salix brachista HOM05D002267 ORTHO05D005902 7.0e-215 750.7 483 77.0
Migut.K00870 Erythranthe guttata HOM05D002267 ORTHO05D005902 9.1e-215 750.4 450 80.7
Lj2A1079T37 Lonicera japonica HOM05D002267 ORTHO05D005902 9.1e-215 750.4 435 82.5
PSO675G5323 Papaver somniferum HOM05D002267 ORTHO05D005902 9.1e-215 750.4 439 80.6
Oeu049334.1 Olea europaea HOM05D002267 ORTHO05D005902 1.2e-214 750.0 449 80.8
Haze_14088 Corylus avellana HOM05D002267 ORTHO05D005902 1.6e-214 749.6 435 81.4
Lsat_1_v5_gn_2_86320 Lactuca sativa HOM05D002267 ORTHO05D005902 1.6e-214 749.6 438 82.9
arahy.Tifrunner.gnm1.ann1.Y9SFAF Arachis hypogaea HOM05D002267 ORTHO05D005902 2.0e-214 749.2 444 81.1
Manes.02G064400 Manihot esculenta HOM05D002267 ORTHO05D005902 4.5e-214 748.0 447 81.2
TWI34G0765 Tripterygium wilfordii HOM05D002267 ORTHO05D005902 1.3e-213 746.5 451 80.3
Cc03_g12570 Coffea canephora HOM05D002267 ORTHO05D005902 1.7e-213 746.1 435 82.3
Eucgr.J01450 Eucalyptus grandis HOM05D002267 ORTHO05D005902 3.8e-213 745.0 426 83.3
Nitab4.5_0002077g0130 Nicotiana tabacum HOM05D002267 ORTHO05D005902 3.8e-213 745.0 452 79.9
CAN.G185.18 Capsicum annuum HOM05D002267 ORTHO05D005902 6.6e-213 744.2 426 82.9
Peaxi162Scf00465g00103 Petunia axillaris HOM05D002267 ORTHO05D005902 6.6e-213 744.2 448 79.7
Hund16105 Selenicereus undatus HOM05D002267 ORTHO05D005902 6.6e-213 744.2 472 77.5
FAN23G1730 Fragaria x ananassa HOM05D002267 ORTHO05D005902 1.1e-212 743.4 441 81.4
arahy.Tifrunner.gnm1.ann1.D1YG1E Arachis hypogaea HOM05D002267 ORTHO05D005902 1.5e-212 743.0 444 80.9
Lalb_Chr04g0258191 Lupinus albus HOM05D002267 ORTHO05D005902 2.5e-212 742.3 435 83.2
Medtr7g019260 Medicago truncatula HOM05D002267 ORTHO05D005902 7.2e-212 740.7 434 83.2
Lj1g0004668 Lotus japonicus HOM05D002267 ORTHO05D005902 1.2e-211 740.0 434 82.9
Lalb_Chr17g0336641 Lupinus albus HOM05D002267 ORTHO05D005902 4.7e-211 738.0 426 83.1
Sc14g0003340 Simmondsia chinensis HOM05D002267 ORTHO05D005902 8.0e-211 737.3 448 79.5
Psat3g192200 Pisum sativum HOM05D002267 ORTHO05D005902 5.2e-210 734.6 444 80.2
Ca_06721_v3 Cicer arietinum L. HOM05D002267 ORTHO05D005902 5.7e-209 731.1 434 82.0
Glyma.18G279400 Glycine max HOM05D002267 ORTHO05D005902 1.3e-208 729.9 442 80.3
VMungo1383G0144 Vigna mungo HOM05D002267 ORTHO05D005902 1.7e-208 729.6 433 80.8
ATR0824G083 Amborella trichopoda HOM05D002267 ORTHO05D005902 2.8e-208 728.8 444 78.6
Phvul.008G021600 Phaseolus vulgaris HOM05D002267 ORTHO05D005902 9.2e-207 723.8 435 80.2
MBI14_g41042_MAGBIO Magnolia biondii HOM05D002267 ORTHO05D005902 2.0e-206 722.6 436 80.0
HPP92_013287 Vanilla planifolia HOM05D002267 ORTHO05D005902 7.3e-204 714.1 448 76.8
CDE02G3890 Ceratophyllum demersum HOM05D002267 ORTHO05D005902 2.6e-201 705.7 446 76.2
SEGI_04709 Sequoiadendron giganteum HOM05D002267 ORTHO05D005902 1.7e-200 703.0 445 77.1
CDE04G2341 Ceratophyllum demersum HOM05D002267 ORTHO05D005902 8.3e-200 700.7 447 75.6
Zm00001eb137710 Zea mays HOM05D002267 ORTHO05D005902 4.6e-198 694.9 466 73.8
Mapoly0028s0072 Marchantia polymorpha HOM05D002267 ORTHO05D005902 4.0e-194 681.8 434 75.6
HanXRQChr07g0200151 Helianthus annuus HOM05D002267 ORTHO05D005902 8.9e-194 680.6 381 84.8
FvH4_5g30870 Fragaria vesca HOM05D002267 ORTHO05D005902 1.2e-193 680.2 396 82.6
TPR.G3251 Trifolium pratense HOM05D002267 ORTHO05D005902 4.1e-191 671.8 382 85.1
Dinv33904 Davidia involucrata HOM05D002267 ORTHO05D005902 7.0e-191 671.0 375 84.5
SMO239G0110 Selaginella moellendorffii HOM05D002267 ORTHO05D005902 1.5e-188 663.3 434 75.8
Pp3c1_4540 Physcomitrium patens HOM05D002267 ORTHO05D005902 8.1e-187 657.5 435 72.2
GSVIVG01008609001 Vitis vinifera HOM05D002267 ORTHO05D005902 7.5e-185 651.0 389 80.5
Os12g0536000 Oryza sativa ssp. japonica HOM05D002267 ORTHO05D005902 7.8e-182 641.0 411 76.9
unitig_748.g7015 Utricularia gibba HOM05D002267 ORTHO05D005902 1.5e-172 610.1 350 82.3
MBI14_g13654_MAGBIO Magnolia biondii HOM05D002267 ORTHO05D005902 7.6e-169 597.8 425 70.6
CBR_g48938 Chara braunii HOM05D002267 ORTHO05D005902 4.2e-167 592.0 435 66.7
RcHm_v2.0_Chr5g0053071 Rosa chinensis HOM05D002267 ORTHO05D005902 3.0e-165 585.9 384 75.3
MBI14_g39140_MAGBIO Magnolia biondii HOM05D002267 ORTHO05D005902 8.7e-165 584.3 437 69.1
CSS0025473 Camellia sinensis var. sinensis HOM05D002267 ORTHO05D005902 1.1e-156 557.4 318 82.1
Nn4g23627 Nelumbo nucifera HOM05D002267 ORTHO05D005902 4.0e-154 548.9 426 66.0
FAN05G0821 Fragaria x ananassa HOM05D002267 ORTHO05D005902 4.5e-153 545.4 338 78.4
Psat0s4662g0040 Pisum sativum HOM05D002267 ORTHO05D005902 2.8e-147 526.2 449 61.7
vmacro23424 Vaccinium macrocarpon HOM05D002267 ORTHO05D005902 4.8e-147 525.4 453 63.6
Sabra17G0091700 Salix brachista HOM05D002267 ORTHO05D008106 2.2e-139 500.0 354 70.9
Cre12.g527400 Chlamydomonas reinhardtii HOM05D002267 ORTHO05D005902 2.4e-138 496.5 445 55.1
FAN18G0049 Fragaria x ananassa HOM05D002267 ORTHO05D005902 1.2e-137 494.2 267 88.0
Prupe.3G243300 Prunus persica HOM05D002267 ORTHO05D005902 8.5e-136 488.0 301 78.1
PRCOL_00003451 Prasinoderma coloniale HOM05D002267 ORTHO05D005902 6.3e-123 445.3 459 51.9
HanXRQChr03g0070911 Helianthus annuus HOM05D002267 ORTHO05D005902 1.6e-118 430.6 239 86.6
Zm00001eb410550 Zea mays HOM05D002267 ORTHO05D005902 3.1e-114 416.4 244 80.3
BcaC03g17613 Brassica carinata HOM05D002267 ORTHO05D005902 2.2e-112 410.2 203 97.5
HanXRQChr03g0070931 Helianthus annuus HOM05D002267 ORTHO05D005902 1.4e-106 391.0 301 66.1
FAN13G3322 Fragaria x ananassa HOM05D002267 ORTHO05D005902 1.0e-104 384.8 228 80.7
AagrBONN_evm.TU.Sc2ySwM_228.1779 Anthoceros agrestis HOM05D002267 ORTHO05D005902 1.7e-104 384.0 238 76.1
MD09G1080600 Malus domestica HOM05D002267 ORTHO05D005902 1.4e-98 364.4 314 64.0
MBI14_g42567_MAGBIO Magnolia biondii HOM05D002267 ORTHO05D005902 9.5e-95 351.7 311 61.1
AagrBONN_evm.TU.Sc2ySwM_362.1960 Anthoceros agrestis HOM05D002267 ORTHO05D005902 4.7e-86 322.8 377 48.3
Duzib177G0042 Durio zibethinus HOM05D002267 ORTHO05D005902 1.1e-79 301.6 249 65.5
HPP92_013297 Vanilla planifolia HOM05D002267 ORTHO05D005902 1.1e-71 275.0 197 67.5
SHI33593 Sapria himalayana HOM05D002267 ORTHO05D005902 1.6e-70 271.2 185 70.3
FAN02G0256 Fragaria x ananassa HOM05D002267 ORTHO05D005902 2.6e-68 263.8 265 55.5
BcaC06g30839 Brassica carinata HOM05D002267 ORTHO05D005902 6.2e-62 242.7 281 52.3
TAR374G1196 Trochodendron aralioides HOM05D002267 ORTHO05D005902 2.5e-55 220.7 259 48.3
BcaB07g30056 Brassica carinata HOM05D002267 ORTHO05D027489 1.3e-51 208.4 104 96.2
HanXRQChr17g0560661 Helianthus annuus HOM05D002267 ORTHO05D027489 1.8e-45 188.0 96 91.7
HPP92_013296 Vanilla planifolia HOM05D002267 ORTHO05D005902 1.1e-42 178.7 151 64.2
MBI14_g30826_MAGBIO Magnolia biondii HOM05D002267 ORTHO05D027489 2.3e-40 171.0 110 75.5
MD09G1080700 Malus domestica HOM05D002267 ORTHO05D005902 1.3e-35 155.2 129 62.0
CARHR060050 Cardamine hirsuta HOM05D002267 ORTHO05D005902 2.2e-35 154.5 100 72.0
Sed0003994 Sechium edule HOM05D002267 ORTHO05D007330 1.8e-32 144.8 124 59.7
TPR.G11470 Trifolium pratense HOM05D002267 ORTHO05D005902 1.8e-32 144.8 119 58.0
GSVIVG01036480001 Vitis vinifera HOM05D002267 ORTHO05D005902 2.8e-30 137.5 75 85.3
Oeu025125.1 Olea europaea HOM05D002267 ORTHO05D005902 3.7e-30 137.1 87 67.8
Duzib168G0178 Durio zibethinus HOM05D002267 ORTHO05D029252 1.1e-29 135.6 79 79.7
Glyma.20G047400 Glycine max HOM05D002267 ORTHO05D029252 2.5e-26 124.4 85 71.8
Glyma.04G110800 Glycine max HOM05D002267 ORTHO05D029252 1.6e-17 95.1 93 54.8
CAN.G464.25 Capsicum annuum HOM05D002267 ORTHO05D020089 1.1e-13 82.4 61 70.5
BcaB04g17555 Brassica carinata HOM05D002267 ORTHO05D092878 2.5e-10 71.2 51 68.6
Glyma.U031218 Glycine max HOM05D002267 ORTHO05D029252 2.5e-10 71.2 36 86.1
MBI14_g13653_MAGBIO Magnolia biondii HOM05D002267 ORTHO05D035901 2.1e-09 68.2 98 41.8
Nn5g27547 Nelumbo nucifera HOM05D002267 ORTHO05D027489 2.0e-07 61.6 30 83.3


User provided reference genes

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