Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB06g29334 Brassica carinata HOM05D005056 ORTHO05D006487 2.5e-145 518.8 283 100.0
C04p70610 Brassica napus HOM05D005056 ORTHO05D006487 5.8e-73 278.5 309 60.2
BraA04t18751Z Brassica rapa HOM05D005056 ORTHO05D006487 4.0e-66 255.8 309 58.3
A04p32930 Brassica napus HOM05D005056 ORTHO05D006487 4.4e-65 252.3 307 57.7
BolC4t28563H Brassica oleracea HOM05D005056 ORTHO05D006487 4.6e-62 242.3 309 53.7
BcaB01g03369 Brassica carinata HOM05D005056 ORTHO05D006487 1.2e-51 207.6 291 51.5
C03p29070 Brassica napus HOM05D005056 ORTHO05D006487 1.6e-51 207.2 354 46.0
BcaC01g05222 Brassica carinata HOM05D005056 ORTHO05D006487 9.9e-49 198.0 354 45.2
A03p24390 Brassica napus HOM05D005056 ORTHO05D006487 9.9e-49 198.0 353 45.0
Carub.0004s2618 Capsella rubella HOM05D005056 ORTHO05D006487 1.9e-47 193.7 290 49.0
Aa31LG1G25370 Aethionema arabicum HOM05D005056 ORTHO05D006487 5.1e-45 185.7 364 43.1
BolC3t15261H Brassica oleracea HOM05D000026 ORTHO05D000094 8.7e-45 184.9 339 44.2
BcaC02g07158 Brassica carinata HOM05D000156 ORTHO05D004238 2.1e-43 180.3 256 51.6
AL4G42470 Arabidopsis lyrata HOM05D005056 ORTHO05D006487 1.1e-42 177.9 335 43.6
BraA03t11648Z Brassica rapa HOM05D005056 ORTHO05D006487 5.3e-42 175.6 339 43.7
Sp4g25750 Schrenkiella parvula HOM05D005056 ORTHO05D006487 6.4e-40 168.7 287 47.7
AT2G43650 Arabidopsis thaliana HOM05D005056 ORTHO05D006487 8.4e-40 168.3 349 41.3
CARHR138830 Cardamine hirsuta HOM05D005056 ORTHO05D006487 1.9e-39 167.2 281 46.3
Thhalv10001371m.g Eutrema salsugineum HOM05D005056 ORTHO05D006487 8.7e-29 131.7 193 52.3
Hma1.2p1_0150F.1_g066790 Hydrangea macrophylla HOM05D005056 ORTHO05D006487 3.8e-24 116.3 177 48.0
TWI38G0332 Tripterygium wilfordii HOM05D005056 ORTHO05D006487 3.8e-24 116.3 369 32.8
Hma1.2p1_0150F.1_g066780 Hydrangea macrophylla HOM05D005056 ORTHO05D006487 6.5e-24 115.5 367 33.5
Atru.chr3.3232 Acer truncatum HOM05D005056 ORTHO05D006487 8.4e-24 115.2 364 34.1
Eucgr.H00317 Eucalyptus grandis HOM05D005056 ORTHO05D006487 1.4e-23 114.4 193 44.0
Prupe.1G206800 Prunus persica HOM05D005056 ORTHO05D006487 1.4e-23 114.4 360 34.2
THA.LOC104803998 Tarenaya hassleriana HOM05D005056 ORTHO05D006487 1.4e-23 114.4 366 33.1
Cpa.g.sc114.8 Carica papaya HOM05D005056 ORTHO05D006487 2.5e-23 113.6 377 32.9
Manes.16G069500 Manihot esculenta HOM05D005056 ORTHO05D006487 9.3e-23 111.7 365 31.8
MD17G1177700 Malus domestica HOM05D005056 ORTHO05D006487 1.6e-22 110.9 362 34.8
CANSAT56G3616 Cannabis sativa HOM05D005056 ORTHO05D006487 2.1e-22 110.5 371 31.3
FAN04G0894 Fragaria x ananassa HOM05D005056 ORTHO05D006487 1.3e-21 107.8 282 36.5
Atru.chr4.1428 Acer truncatum HOM05D005056 ORTHO05D006487 2.3e-21 107.1 196 41.8
QL93p1902_0036 Quercus lobata HOM05D005056 ORTHO05D006487 3.0e-21 106.7 362 31.8
QL10p054991 Quercus lobata HOM05D005056 ORTHO05D006487 5.1e-21 105.9 369 29.8
CSS0024905 Camellia sinensis var. sinensis HOM05D005056 ORTHO05D006487 8.7e-21 105.1 359 33.4
Ciclev10019145m.g Citrus clementina HOM05D005056 ORTHO05D006487 1.5e-20 104.4 366 31.4
GSVIVG01038137001 Vitis vinifera HOM05D005056 ORTHO05D006487 3.3e-20 103.2 364 33.0
PGR142G4138 Punica granatum HOM05D005056 ORTHO05D006487 5.7e-20 102.4 347 32.9
RcHm_v2.0_Chr7g0219421 Rosa chinensis HOM05D005056 ORTHO05D006487 5.7e-20 102.4 299 33.8
Sc08g0000580 Simmondsia chinensis HOM05D005056 ORTHO05D006487 7.4e-20 102.1 190 40.0
FvH4_5g27692 Fragaria vesca HOM05D005056 ORTHO05D006487 9.7e-20 101.7 292 35.3
Peaxi162Scf00568g00417 Petunia axillaris HOM05D005056 ORTHO05D006487 9.7e-20 101.7 350 31.4
DCAR_019081 Daucus carota HOM05D005056 ORTHO05D006487 2.8e-19 100.1 366 32.0
FAN13G0846 Fragaria x ananassa HOM05D005056 ORTHO05D006487 2.8e-19 100.1 292 36.3
Solyc11g072390.2 Solanum lycopersicum HOM05D005056 ORTHO05D006487 2.8e-19 100.1 358 30.7
Thecc.05G215400 Theobroma cacao HOM05D005056 ORTHO05D006487 3.7e-19 99.8 370 31.9
TAR636G2681 Trochodendron aralioides HOM05D005056 ORTHO05D006487 3.7e-19 99.8 305 34.4
MBI18_g06087_MAGBIO Magnolia biondii HOM05D005056 ORTHO05D006487 4.8e-19 99.4 208 39.4
C04p70630 Brassica napus HOM05D005056 ORTHO05D006487 6.3e-19 99.0 100 61.0
BolC4t28565H Brassica oleracea HOM05D005056 ORTHO05D006487 6.3e-19 99.0 100 61.0
Haze_01366 Corylus avellana HOM05D005056 ORTHO05D006487 6.3e-19 99.0 354 31.1
Sopen11g029990 Solanum pennellii HOM05D005056 ORTHO05D006487 8.2e-19 98.6 363 31.4
FAN18G4484 Fragaria x ananassa HOM05D005056 ORTHO05D006487 1.1e-18 98.2 292 34.6
Lj4g0012801 Lotus japonicus HOM05D005056 ORTHO05D006487 1.1e-18 98.2 180 41.1
Solyc11g072320.3 Solanum lycopersicum HOM05D005056 ORTHO05D006487 1.8e-18 97.4 366 30.6
Sopen11g030040 Solanum pennellii HOM05D005056 ORTHO05D006487 1.8e-18 97.4 357 29.7
SalBow1G2014 Salvia bowleyana HOM05D005056 ORTHO05D006487 2.4e-18 97.1 183 42.1
Glyma.07G208300 Glycine max HOM05D005056 ORTHO05D006487 5.3e-18 95.9 175 42.9
Gohir.A04G120600 Gossypium hirsutum HOM05D005056 ORTHO05D006487 5.3e-18 95.9 369 32.0
arahy.Tifrunner.gnm1.ann1.X1H480 Arachis hypogaea HOM05D005056 ORTHO05D006487 6.9e-18 95.5 363 29.2
Migut.N03070 Erythranthe guttata HOM05D005056 ORTHO05D006487 6.9e-18 95.5 272 33.5
CSS0004898 Camellia sinensis var. sinensis HOM05D005056 ORTHO05D006487 9.0e-18 95.1 332 33.1
AL5G17740 Arabidopsis lyrata HOM05D005056 ORTHO05D006487 1.2e-17 94.7 208 39.9
Sabra13G0104700 Salix brachista HOM05D005056 ORTHO05D006487 1.2e-17 94.7 355 31.5
Sabra13G0105000 Salix brachista HOM05D005056 ORTHO05D006487 1.2e-17 94.7 355 31.5
Duzib128G0002 Durio zibethinus HOM05D005056 ORTHO05D006487 1.5e-17 94.4 378 29.6
Phvul.003G296300 Phaseolus vulgaris HOM05D005056 ORTHO05D006487 2.6e-17 93.6 282 33.0
Cc03_g13950 Coffea canephora HOM05D005056 ORTHO05D006487 5.9e-17 92.4 193 40.4
Gorai.012G150100 Gossypium raimondii HOM05D005056 ORTHO05D006487 7.7e-17 92.0 375 30.1
Sabra13G0105200 Salix brachista HOM05D005056 ORTHO05D006487 7.7e-17 92.0 357 31.9
Sabra13G0105300 Salix brachista HOM05D005056 ORTHO05D006487 7.7e-17 92.0 357 31.9
Potri.013G125800 Populus trichocarpa HOM05D005056 ORTHO05D006487 1.7e-16 90.9 373 31.1
arahy.Tifrunner.gnm1.ann1.K7ZH1T Arachis hypogaea HOM05D005056 ORTHO05D006487 2.2e-16 90.5 366 28.7
Glyma.02G137100 Glycine max HOM05D005056 ORTHO05D006487 2.9e-16 90.1 362 28.5
AT3G28230 Arabidopsis thaliana HOM05D005056 ORTHO05D006487 5.0e-16 89.4 213 38.5
vmacro03868 Vaccinium macrocarpon HOM05D005056 ORTHO05D006487 5.0e-16 89.4 352 30.7
COL.COLO4_09146 Corchorus olitorius HOM05D005056 ORTHO05D006487 1.4e-15 87.8 346 32.4
Lj1g0023120 Lotus japonicus HOM05D005056 ORTHO05D006487 1.9e-15 87.4 285 31.6
PSO170G2549 Papaver somniferum HOM05D005056 ORTHO05D006487 1.9e-15 87.4 346 30.9
Dinv04468 Davidia involucrata HOM05D005056 ORTHO05D006487 2.5e-15 87.0 341 28.7
SGA_v2.0_scaffold289G47281 Striga asiatica HOM05D005056 ORTHO05D006487 2.5e-15 87.0 272 32.4
VMungo0251G2998 Vigna mungo HOM05D005056 ORTHO05D006487 2.5e-15 87.0 328 30.5
Lalb_Chr16g0384481 Lupinus albus HOM05D005056 ORTHO05D006487 4.2e-15 86.3 355 31.3
ClCG06G001090 Citrullus lanatus HOM05D005056 ORTHO05D006487 5.5e-15 85.9 340 30.0
CAN.G308.62 Capsicum annuum HOM05D005056 ORTHO05D006487 9.4e-15 85.1 332 28.9
A04p32940 Brassica napus HOM05D005056 ORTHO05D001240 1.6e-14 84.3 117 52.1
Gohir.D04G162100 Gossypium hirsutum HOM05D005056 ORTHO05D006487 1.6e-14 84.3 373 29.8
TPR.G1297 Trifolium pratense HOM05D005056 ORTHO05D006487 1.6e-14 84.3 147 39.5
CDE04G2996 Ceratophyllum demersum HOM05D005056 ORTHO05D006487 2.1e-14 84.0 177 37.3
Sed0010490 Sechium edule HOM05D005056 ORTHO05D006487 2.1e-14 84.0 349 28.9
SEGI_33254 Sequoiadendron giganteum HOM05D005056 ORTHO05D006487 2.7e-14 83.6 194 35.1
Hund06242 Selenicereus undatus HOM05D005056 ORTHO05D006487 3.6e-14 83.2 228 34.6
FAN08G2023 Fragaria x ananassa HOM05D005056 ORTHO05D006487 7.9e-14 82.0 291 31.6
PSO302G0034 Papaver somniferum HOM05D005056 ORTHO05D006487 1.4e-13 81.3 344 29.9
Nitab4.5_0001802g0080 Nicotiana tabacum HOM05D005056 ORTHO05D006487 2.3e-13 80.5 354 28.8
CsaV3_6G007040 Cucumis sativus L. HOM05D005056 ORTHO05D006487 3.0e-13 80.1 355 31.0
MELO3C022426.2 Cucumis melo HOM05D005056 ORTHO05D006487 3.9e-13 79.7 356 30.6
Zm00001eb034060 Zea mays HOM05D005056 ORTHO05D006487 3.9e-13 79.7 229 32.3
HPP92_014516 Vanilla planifolia HOM05D005056 ORTHO05D006487 5.1e-13 79.3 171 36.8
EL10Ac9g21710 Beta vulgaris HOM05D005056 ORTHO05D006487 6.7e-13 79.0 175 37.1
Nitab4.5_0002129g0080 Nicotiana tabacum HOM05D005056 ORTHO05D006487 6.7e-13 79.0 360 27.2
Medtr4g087270 Medicago truncatula HOM05D005056 ORTHO05D006487 8.8e-13 78.6 356 29.2
ATR0763G045 Amborella trichopoda HOM05D005056 ORTHO05D006487 1.1e-12 78.2 169 39.6
HanXRQChr14g0439801 Helianthus annuus HOM05D005056 ORTHO05D006487 1.1e-12 78.2 261 32.6
FAN12G0411 Fragaria x ananassa HOM05D005056 ORTHO05D006487 1.5e-12 77.8 116 44.0
FAN12G0483 Fragaria x ananassa HOM05D005056 ORTHO05D006487 1.5e-12 77.8 116 44.0
Rhsim13G0194600 Rhododendron simsii HOM05D005056 ORTHO05D006656 1.5e-12 77.8 341 28.4
Os01g0104800 Oryza sativa ssp. japonica HOM05D005056 ORTHO05D006487 2.0e-12 77.4 346 27.5
SMO358G0450 Selaginella moellendorffii HOM05D005056 ORTHO05D006487 2.5e-12 77.0 307 29.6
ECA238G2929 Erigeron canadensis HOM05D005056 ORTHO05D006487 3.7e-11 73.2 350 28.9
FvH4_4g18081 Fragaria vesca HOM05D005056 ORTHO05D006487 1.8e-10 70.9 132 43.2
Ah.01g019270 Amaranthus hybridus HOM05D005056 ORTHO05D006487 2.4e-10 70.5 326 28.5
Oeu018048.1 Olea europaea HOM05D005056 ORTHO05D006487 4.1e-10 69.7 172 35.5
TPR.G23553 Trifolium pratense HOM05D005056 ORTHO05D006487 5.3e-10 69.3 370 27.3
BcaB06g29336 Brassica carinata HOM05D005056 ORTHO05D006487 1.2e-09 68.2 124 41.1
Lsat_1_v5_gn_2_46281 Lactuca sativa HOM05D005056 ORTHO05D006487 2.6e-09 67.0 227 31.7
Actinidia11444 Actinidia chinensis HOM05D005056 ORTHO05D006487 1.0e-08 65.1 273 32.2
AUR62016951 Chenopodium quinoa HOM05D005056 ORTHO05D006487 1.0e-08 65.1 260 29.2
Aqoxy5G00514 Aquilegia oxysepala HOM05D005056 ORTHO05D006487 1.3e-08 64.7 318 28.0
Psat7g121360 Pisum sativum HOM05D005056 ORTHO05D006487 1.7e-08 64.3 361 27.1
AUR62011304 Chenopodium quinoa HOM05D005056 ORTHO05D006487 2.2e-08 63.9 306 28.1
Pp3c13_22260 Physcomitrium patens HOM05D005056 ORTHO05D006487 2.5e-07 60.5 347 26.5
Mapoly0041s0093 Marchantia polymorpha HOM05D005056 ORTHO05D006403 4.2e-07 59.7 147 34.7
Ca_18642_v3 Cicer arietinum L. HOM05D005056 ORTHO05D006487 6.1e-06 55.8 173 30.1
AL677U10020 Arabidopsis lyrata HOM05D005056 ORTHO05D006487 7.9e-06 55.5 44 63.6


User provided reference genes

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