Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB06g29268 Brassica carinata HOM05D006973 ORTHO05D008636 2.6e-56 221.9 117 100.0
BcaB06g29270 Brassica carinata HOM05D006973 ORTHO05D008636 2.6e-56 221.9 117 100.0
BcaC02g07217 Brassica carinata HOM05D006973 ORTHO05D008636 7.2e-54 213.8 117 96.6
C04p69950 Brassica napus HOM05D006973 ORTHO05D008636 7.2e-54 213.8 117 96.6
BolC4t28495H Brassica oleracea HOM05D006973 ORTHO05D008636 7.2e-54 213.8 117 96.6
A04p32440 Brassica napus HOM05D006973 ORTHO05D008636 1.2e-53 213.0 117 95.7
BraA04t18696Z Brassica rapa HOM05D006973 ORTHO05D008636 1.2e-53 213.0 117 95.7
A03p23820 Brassica napus HOM05D006973 ORTHO05D008636 8.2e-50 200.3 117 90.6
BraA03t11597Z Brassica rapa HOM05D006973 ORTHO05D008636 8.2e-50 200.3 117 90.6
BraA05t19306Z Brassica rapa HOM05D006973 ORTHO05D008636 1.1e-49 199.9 117 89.7
A05p03160 Brassica napus HOM05D006973 ORTHO05D008636 1.2e-48 196.4 117 88.9
BcaC02g12446 Brassica carinata HOM05D006973 ORTHO05D008636 1.6e-48 196.1 117 88.0
BolC4t22017H Brassica oleracea HOM05D006973 ORTHO05D008636 1.6e-48 196.1 117 88.0
C04p03810 Brassica napus HOM05D006973 ORTHO05D008636 2.7e-48 195.3 117 88.0
Sp4g25000 Schrenkiella parvula HOM05D006973 ORTHO05D008636 9.4e-46 186.8 117 86.3
C03p28410 Brassica napus HOM05D006973 ORTHO05D008636 6.1e-45 184.1 118 85.6
BolC3t15210H Brassica oleracea HOM05D006973 ORTHO05D008636 6.1e-45 184.1 118 85.6
Thhalv10017430m.g Eutrema salsugineum HOM05D006973 ORTHO05D008636 2.2e-42 175.6 123 81.3
CARHR137940 Cardamine hirsuta HOM05D006973 ORTHO05D008636 6.3e-42 174.1 118 82.2
BcaB01g03419 Brassica carinata HOM05D006973 ORTHO05D008636 1.1e-41 173.3 119 79.8
Carub.0004s2531 Capsella rubella HOM05D006973 ORTHO05D008636 2.0e-40 169.1 119 79.0
AL4G41480 Arabidopsis lyrata HOM05D006973 ORTHO05D008636 2.3e-39 165.6 118 78.8
AL713U10010 Arabidopsis lyrata HOM05D006973 ORTHO05D008636 2.3e-39 165.6 118 78.8
AT2G42870 Arabidopsis thaliana HOM05D006973 ORTHO05D008636 9.5e-38 160.2 119 77.3
Sp5g04010 Schrenkiella parvula HOM05D006973 ORTHO05D008636 9.2e-33 143.7 119 68.1
BraA09t40577Z Brassica rapa HOM05D006973 ORTHO05D008636 1.1e-30 136.7 118 66.1
BcaC02g10032 Brassica carinata HOM05D006973 ORTHO05D008636 1.5e-30 136.3 118 66.9
C04p33710 Brassica napus HOM05D006973 ORTHO05D008636 1.5e-30 136.3 118 66.9
BolC4t24939H Brassica oleracea HOM05D006973 ORTHO05D008636 1.5e-30 136.3 118 66.9
BraA04t15963Z Brassica rapa HOM05D006973 ORTHO05D008636 1.5e-30 136.3 118 67.8
A04p02340 Brassica napus HOM05D006973 ORTHO05D008636 1.9e-30 136.0 118 66.9
A09p51360 Brassica napus HOM05D006973 ORTHO05D008636 3.3e-30 135.2 118 65.3
Thhalv10006323m.g Eutrema salsugineum HOM05D006973 ORTHO05D008636 3.3e-30 135.2 119 65.5
Aa31LG1G24640 Aethionema arabicum HOM05D006973 ORTHO05D008636 2.8e-29 132.1 125 64.0
BcaB02g08235 Brassica carinata HOM05D006973 ORTHO05D008636 4.7e-29 131.3 118 63.6
AL5G40650 Arabidopsis lyrata HOM05D006973 ORTHO05D008636 1.0e-28 130.2 119 63.9
CARHR169260 Cardamine hirsuta HOM05D006973 ORTHO05D008636 1.4e-28 129.8 119 62.2
BcaC07g40229 Brassica carinata HOM05D006973 ORTHO05D008636 2.0e-27 125.9 119 63.0
AT3G58850 Arabidopsis thaliana HOM05D006973 ORTHO05D008636 4.4e-27 124.8 119 59.7
Carub.0005s2563 Capsella rubella HOM05D006973 ORTHO05D008636 8.3e-26 120.6 121 58.7
BcaC07g40299 Brassica carinata HOM05D006973 ORTHO05D008636 3.2e-25 118.6 109 64.2
C08p34140 Brassica napus HOM05D006973 ORTHO05D008636 3.2e-25 118.6 109 64.2
BolC8t51013H Brassica oleracea HOM05D006973 ORTHO05D008636 3.2e-25 118.6 109 64.2
Cfa021245 Carpinus fangiana HOM05D006973 ORTHO05D008636 9.8e-19 97.1 76 61.8
Nitab4.5_0001675g0100 Nicotiana tabacum HOM05D006973 ORTHO05D008636 2.9e-18 95.5 69 66.7
Potri.005G201500 Populus trichocarpa HOM05D006973 ORTHO05D008636 1.4e-17 93.2 104 50.0
Aa31LG10G13410 Aethionema arabicum HOM05D006973 ORTHO05D008636 1.9e-17 92.8 124 52.4
RcHm_v2.0_Chr2g0151491 Rosa chinensis HOM05D006973 ORTHO05D008636 4.1e-17 91.7 105 52.4
Manes.02G084300 Manihot esculenta HOM05D006973 ORTHO05D008636 5.4e-17 91.3 91 53.8
Prupe.3G172700 Prunus persica HOM05D006973 ORTHO05D008636 5.4e-17 91.3 122 46.7
Nitab4.5_0003934g0010 Nicotiana tabacum HOM05D006973 ORTHO05D008636 7.0e-17 90.9 62 69.4
Sabra02G0048600 Salix brachista HOM05D006973 ORTHO05D008636 7.0e-17 90.9 99 49.5
VMungo0647G1950 Vigna mungo HOM05D006973 ORTHO05D008636 7.0e-17 90.9 70 58.6
QL08p044096 Quercus lobata HOM05D006973 ORTHO05D008636 9.2e-17 90.5 67 62.7
Haze_13497 Corylus avellana HOM05D006973 ORTHO05D008636 1.6e-16 89.7 65 61.5
Glyma.02G286900 Glycine max HOM05D006973 ORTHO05D008636 1.6e-16 89.7 91 51.6
Peaxi162Scf00111g00009 Petunia axillaris HOM05D006973 ORTHO05D008636 1.6e-16 89.7 114 45.6
Duzib147G0021 Durio zibethinus HOM05D006973 ORTHO05D008636 2.1e-16 89.4 102 51.0
FvH4_6g38230 Fragaria vesca HOM05D006973 ORTHO05D008636 2.7e-16 89.0 112 46.4
FAN02G1229 Fragaria x ananassa HOM05D006973 ORTHO05D008636 2.7e-16 89.0 112 46.4
FAN14G5571 Fragaria x ananassa HOM05D006973 ORTHO05D008636 2.7e-16 89.0 112 46.4
FAN05G1052 Fragaria x ananassa HOM05D006973 ORTHO05D008636 6.0e-16 87.8 106 48.1
FAN09G4519 Fragaria x ananassa HOM05D006973 ORTHO05D008636 6.0e-16 87.8 106 48.1
Phvul.008G191400 Phaseolus vulgaris HOM05D006973 ORTHO05D008636 6.0e-16 87.8 65 60.0
PGSC0003DMG400017344 Solanum tuberosum HOM05D006973 ORTHO05D008636 6.0e-16 87.8 61 68.9
Thecc.01G161800 Theobroma cacao HOM05D006973 ORTHO05D008636 6.0e-16 87.8 97 48.5
CAN.G585.39 Capsicum annuum HOM05D006973 ORTHO05D008636 7.8e-16 87.4 62 66.1
Duzib187G1733 Durio zibethinus HOM05D006973 ORTHO05D008636 7.8e-16 87.4 93 53.8
Potri.002G060100 Populus trichocarpa HOM05D006973 ORTHO05D008636 1.0e-15 87.0 99 51.5
Gohir.A11G060500 Gossypium hirsutum HOM05D006973 ORTHO05D008636 1.3e-15 86.7 62 67.7
Solyc07g056360.1 Solanum lycopersicum HOM05D006973 ORTHO05D008636 1.7e-15 86.3 61 67.2
Sopen07g029740 Solanum pennellii HOM05D006973 ORTHO05D008636 1.7e-15 86.3 61 67.2
Dinv21566 Davidia involucrata HOM05D006973 ORTHO05D008636 2.3e-15 85.9 95 47.4
Glyma.14G028000 Glycine max HOM05D006973 ORTHO05D008636 2.3e-15 85.9 63 60.3
Gohir.D11G064600 Gossypium hirsutum HOM05D006973 ORTHO05D008636 5.1e-15 84.7 62 66.1
Gorai.007G069800 Gossypium raimondii HOM05D006973 ORTHO05D008636 5.1e-15 84.7 62 66.1
Medtr5g091690 Medicago truncatula HOM05D006973 ORTHO05D008636 8.6e-15 84.0 66 59.1
Lalb_Chr17g0348291 Lupinus albus HOM05D006973 ORTHO05D008636 1.1e-14 83.6 65 58.5
Nn6g34359 Nelumbo nucifera HOM05D006973 ORTHO05D008636 1.1e-14 83.6 96 42.7
CANSAT64G0305 Cannabis sativa HOM05D006973 ORTHO05D008636 1.5e-14 83.2 61 63.9
Ciclev10033026m.g Citrus clementina HOM05D006973 ORTHO05D008636 1.5e-14 83.2 64 64.1
LjContig00310g0018130 Lotus japonicus HOM05D006973 ORTHO05D008636 3.3e-14 82.0 127 39.4
Atru.chr6.2093 Acer truncatum HOM05D006973 ORTHO05D008636 5.6e-14 81.3 61 62.3
Nn3g20922 Nelumbo nucifera HOM05D006973 ORTHO05D008636 9.5e-14 80.5 85 45.9
ClCG09G022400 Citrullus lanatus HOM05D006973 ORTHO05D008636 1.6e-13 79.7 120 38.3
DCAR_013315 Daucus carota HOM05D006973 ORTHO05D008636 1.6e-13 79.7 113 47.8
TPR.G12665 Trifolium pratense HOM05D006973 ORTHO05D008636 1.6e-13 79.7 63 57.1
Rhsim06G0116300 Rhododendron simsii HOM05D006973 ORTHO05D008636 2.8e-13 79.0 78 46.2
CsaV3_6G038070 Cucumis sativus L. HOM05D006973 ORTHO05D008636 3.6e-13 78.6 94 43.6
MELO3C014471.2 Cucumis melo HOM05D006973 ORTHO05D008636 6.2e-13 77.8 69 53.6
Actinidia32515 Actinidia chinensis HOM05D006973 ORTHO05D008636 8.1e-13 77.4 92 48.9
Aqoxy4G00147 Aquilegia oxysepala HOM05D006973 ORTHO05D008636 8.1e-13 77.4 66 51.5
Oeu040038.1 Olea europaea HOM05D006973 ORTHO05D008636 8.1e-13 77.4 70 52.9
PGR042G1786 Punica granatum HOM05D006973 ORTHO05D008636 1.4e-12 76.6 56 62.5
Cc05_g09430 Coffea canephora HOM05D006973 ORTHO05D008636 1.8e-12 76.3 54 64.8
TAR629G2498 Trochodendron aralioides HOM05D006973 ORTHO05D008636 3.1e-12 75.5 100 41.0
Lalb_Chr04g0248771 Lupinus albus HOM05D006973 ORTHO05D008636 4.0e-12 75.1 61 55.7
Lalb_Chr10g0106711 Lupinus albus HOM05D006973 ORTHO05D008636 2.6e-11 72.4 62 50.0
MBI07_g21782_MAGBIO Magnolia biondii HOM05D006973 ORTHO05D008636 9.9e-11 70.5 66 51.5
MBI07_g41313_MAGBIO Magnolia biondii HOM05D006973 ORTHO05D008636 9.9e-11 70.5 66 51.5
THA.LOC104803237 Tarenaya hassleriana HOM05D006973 ORTHO05D008636 9.9e-11 70.5 59 55.9
Sed0009997 Sechium edule HOM05D006973 ORTHO05D008636 1.3e-10 70.1 87 43.7
Oeu020059.1 Olea europaea HOM05D006973 ORTHO05D008636 6.4e-10 67.8 118 36.4
MSTRG.14293 Avicennia marina HOM05D006973 ORTHO05D008636 1.4e-09 66.6 118 37.3
CSS0041461 Camellia sinensis var. sinensis HOM05D006973 ORTHO05D008636 3.2e-09 65.5 66 47.0
arahy.Tifrunner.gnm1.ann1.D7Q1BT Arachis hypogaea HOM05D006973 ORTHO05D008636 5.4e-09 64.7 53 54.7
arahy.Tifrunner.gnm1.ann1.SG1KTY Arachis hypogaea HOM05D006973 ORTHO05D008636 5.4e-09 64.7 53 54.7
arahy.Tifrunner.gnm1.ann1.9T2B0R Arachis hypogaea HOM05D006973 ORTHO05D008636 7.1e-09 64.3 50 58.0
CDE04G0049 Ceratophyllum demersum HOM05D006973 ORTHO05D008636 6.6e-07 57.8 64 40.6
ATR0693G012 Amborella trichopoda HOM05D006547 ORTHO05D008112 7.3e-06 54.3 77 36.4
MBI10_g03529_MAGBIO Magnolia biondii HOM05D006973 ORTHO05D008636 9.5e-06 53.9 56 42.9


User provided reference genes

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