Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB06g29234 Brassica carinata HOM05D010908 ORTHO05D002967 4.4e-195 684.5 358 100.0
BcaB06g29233 Brassica carinata HOM05D010908 ORTHO05D013188 5.8e-62 242.3 156 83.3
AL8G13390 Arabidopsis lyrata HOM05D000229 ORTHO05D013188 6.5e-13 79.3 185 30.3
BraA06t24944Z Brassica rapa HOM05D006237 ORTHO05D002967 6.5e-13 79.3 75 62.7
TWI56G0599 Tripterygium wilfordii HOM05D006237 ORTHO05D002967 1.0e-10 72.0 76 53.9
CARHR157920 Cardamine hirsuta HOM05D006237 ORTHO05D002967 1.8e-10 71.2 70 58.6
Aa31LG4G17550 Aethionema arabicum HOM05D006237 ORTHO05D002967 2.3e-10 70.9 70 58.6
FAN09G4095 Fragaria x ananassa HOM05D006237 ORTHO05D002967 2.3e-10 70.9 70 55.7
Lj4A176T35 Lonicera japonica HOM05D006237 ORTHO05D002967 3.0e-10 70.5 70 58.6
THA.LOC104821384 Tarenaya hassleriana HOM05D006237 ORTHO05D002967 3.9e-10 70.1 70 58.6
AL5G28600 Arabidopsis lyrata HOM05D006237 ORTHO05D002967 5.1e-10 69.7 70 57.1
AT3G49080 Arabidopsis thaliana HOM05D006237 ORTHO05D002967 5.1e-10 69.7 70 57.1
Carub.0005s1528 Capsella rubella HOM05D006237 ORTHO05D002967 5.1e-10 69.7 70 57.1
ClCG01G001020 Citrullus lanatus HOM05D006237 ORTHO05D002967 5.1e-10 69.7 70 57.1
MELO3C005830.2 Cucumis melo HOM05D006237 ORTHO05D002967 5.1e-10 69.7 70 58.6
Dinv35235 Davidia involucrata HOM05D006237 ORTHO05D002967 5.1e-10 69.7 117 42.7
Thhalv10010396m.g Eutrema salsugineum HOM05D006237 ORTHO05D002967 5.1e-10 69.7 70 55.7
Cpa.g.sc1.394 Carica papaya HOM05D006237 ORTHO05D002967 6.7e-10 69.3 70 57.1
DCAR_027497 Daucus carota HOM05D006237 ORTHO05D002967 6.7e-10 69.3 70 57.1
TWI12G0168 Tripterygium wilfordii HOM05D006237 ORTHO05D002967 6.7e-10 69.3 76 52.6
vmacro12929 Vaccinium macrocarpon HOM05D006237 ORTHO05D002967 6.7e-10 69.3 70 57.1
Atru.chr1.396 Acer truncatum HOM05D006237 ORTHO05D002967 8.8e-10 68.9 70 55.7
BcaB01g00750 Brassica carinata HOM05D006237 ORTHO05D002967 1.1e-09 68.6 70 55.7
BcaC07g39385 Brassica carinata HOM05D006237 ORTHO05D002967 1.1e-09 68.6 70 55.7
A06p18660 Brassica napus HOM05D006237 ORTHO05D002967 1.1e-09 68.6 70 55.7
C08p24080 Brassica napus HOM05D006237 ORTHO05D002967 1.1e-09 68.6 70 55.7
BolC8t50029H Brassica oleracea HOM05D006237 ORTHO05D002967 1.1e-09 68.6 70 55.7
Lj3g0001662 Lotus japonicus HOM05D006237 ORTHO05D002967 1.1e-09 68.6 70 57.1
Sp5g12990 Schrenkiella parvula HOM05D006237 ORTHO05D002967 1.1e-09 68.6 70 55.7
Actinidia34142 Actinidia chinensis HOM05D006237 ORTHO05D002967 1.5e-09 68.2 70 55.7
CSS0013329 Camellia sinensis var. sinensis HOM05D006237 ORTHO05D002967 1.5e-09 68.2 70 55.7
FvH4_6g32580 Fragaria vesca HOM05D006237 ORTHO05D002967 1.5e-09 68.2 70 58.6
FAN02G0617 Fragaria x ananassa HOM05D006237 ORTHO05D002967 1.5e-09 68.2 70 58.6
FAN05G1350 Fragaria x ananassa HOM05D006237 ORTHO05D002967 1.5e-09 68.2 70 58.6
FAN05G1909 Fragaria x ananassa HOM05D006237 ORTHO05D002967 1.5e-09 68.2 70 58.6
FAN14G2466 Fragaria x ananassa HOM05D006237 ORTHO05D002967 1.5e-09 68.2 70 58.6
MD09G1200300 Malus domestica HOM05D006237 ORTHO05D002967 1.5e-09 68.2 70 54.3
MD15G1412900 Malus domestica HOM05D006237 ORTHO05D002967 1.5e-09 68.2 70 54.3
QL09p013331 Quercus lobata HOM05D006237 ORTHO05D002967 1.5e-09 68.2 70 58.6
CiPaw.15G152100 Carya illinoinensis HOM05D006237 ORTHO05D002967 2.0e-09 67.8 70 55.7
Ca_08896_v3 Cicer arietinum L. HOM05D006237 ORTHO05D002967 2.0e-09 67.8 70 54.3
CsaV3_5G001160 Cucumis sativus L. HOM05D006237 ORTHO05D002967 2.0e-09 67.8 70 55.7
Prupe.3G056900 Prunus persica HOM05D006237 ORTHO05D002967 2.6e-09 67.4 70 57.1
SGA_v2.0_scaffold44G16742 Striga asiatica HOM05D006237 ORTHO05D002967 2.6e-09 67.4 79 50.6
MSTRG.27097 Avicennia marina HOM05D006237 ORTHO05D002967 3.3e-09 67.0 79 50.6
A04p31840 Brassica napus HOM05D010908 ORTHO05D013188 3.3e-09 67.0 84 45.2
BraA04t18642Z Brassica rapa HOM05D010908 ORTHO05D013188 3.3e-09 67.0 84 45.2
Cc02_g29180 Coffea canephora HOM05D006237 ORTHO05D002967 3.3e-09 67.0 70 57.1
Glyma.11G094400 Glycine max HOM05D006237 ORTHO05D002967 3.3e-09 67.0 70 54.3
Glyma.12G020800 Glycine max HOM05D006237 ORTHO05D002967 3.3e-09 67.0 70 54.3
MBI16_g19591_MAGBIO Magnolia biondii HOM05D006237 ORTHO05D002967 3.3e-09 67.0 70 55.7
Manes.14G023800 Manihot esculenta HOM05D006237 ORTHO05D002967 4.4e-09 66.6 70 55.7
Medtr3g078370 Medicago truncatula HOM05D006237 ORTHO05D002967 4.4e-09 66.6 70 52.9
Phvul.011G049550 Phaseolus vulgaris HOM05D006237 ORTHO05D002967 4.4e-09 66.6 70 54.3
Phvul.011G076300 Phaseolus vulgaris HOM05D006237 ORTHO05D002967 4.4e-09 66.6 70 54.3
Rhsim03G0189600 Rhododendron simsii HOM05D006237 ORTHO05D002967 4.4e-09 66.6 70 55.7
RcHm_v2.0_Chr2g0141031 Rosa chinensis HOM05D006237 ORTHO05D002967 4.4e-09 66.6 70 57.1
Cc04_g01300 Coffea canephora HOM05D006237 ORTHO05D002967 5.7e-09 66.2 81 49.4
TPR.G21017 Trifolium pratense HOM05D006237 ORTHO05D002967 5.7e-09 66.2 70 54.3
unitig_0.g1076 Utricularia gibba HOM05D006237 ORTHO05D002967 5.7e-09 66.2 82 50.0
Cfa016275 Carpinus fangiana HOM05D006237 ORTHO05D002967 7.4e-09 65.9 70 52.9
Lsat_1_v5_gn_4_66521 Lactuca sativa HOM05D006237 ORTHO05D002967 7.4e-09 65.9 70 52.9
CANSAT54G1461 Cannabis sativa HOM05D006237 ORTHO05D002967 9.7e-09 65.5 70 54.3
CAN.G65.182 Capsicum annuum HOM05D006237 ORTHO05D002967 9.7e-09 65.5 80 47.5
Peaxi162Scf00078g00351 Petunia axillaris HOM05D006237 ORTHO05D002967 9.7e-09 65.5 70 54.3
ECA248G0219 Erigeron canadensis HOM05D006237 ORTHO05D002967 1.3e-08 65.1 70 52.9
Migut.F00315 Erythranthe guttata HOM05D006237 ORTHO05D002967 1.3e-08 65.1 79 49.4
Gohir.A09G129100 Gossypium hirsutum HOM05D006237 ORTHO05D002967 1.3e-08 65.1 70 55.7
Gohir.D09G125100 Gossypium hirsutum HOM05D006237 ORTHO05D002967 1.3e-08 65.1 70 55.7
Oeu022599.1 Olea europaea HOM05D006237 ORTHO05D002967 1.3e-08 65.1 70 55.7
Os07g0658200 Oryza sativa ssp. japonica HOM05D006237 ORTHO05D002967 1.3e-08 65.1 70 52.9
Ah.16g108280 Amaranthus hybridus HOM05D006237 ORTHO05D002967 1.7e-08 64.7 76 51.3
Psat6g075200 Pisum sativum HOM05D006237 ORTHO05D002967 1.7e-08 64.7 70 50.0
Sabra12G0108700 Salix brachista HOM05D006237 ORTHO05D002967 1.7e-08 64.7 73 54.8
HPP92_005582 Vanilla planifolia HOM05D006237 ORTHO05D002967 1.7e-08 64.7 70 52.9
AUR62020779 Chenopodium quinoa HOM05D006237 ORTHO05D002967 2.2e-08 64.3 79 49.4
AUR62027921 Chenopodium quinoa HOM05D006237 ORTHO05D002967 2.2e-08 64.3 79 49.4
Eucgr.K00287 Eucalyptus grandis HOM05D006237 ORTHO05D002967 2.2e-08 64.3 70 52.9
Potri.012G144700 Populus trichocarpa HOM05D006237 ORTHO05D002967 2.2e-08 64.3 70 55.7
PGR142G0430 Punica granatum HOM05D006237 ORTHO05D002967 2.2e-08 64.3 70 54.3
Solyc10g080160.2 Solanum lycopersicum HOM05D006237 ORTHO05D002967 2.2e-08 64.3 70 52.9
Sopen10g030770 Solanum pennellii HOM05D006237 ORTHO05D002967 2.2e-08 64.3 70 52.9
PGSC0003DMG400023687 Solanum tuberosum HOM05D006237 ORTHO05D002967 2.2e-08 64.3 70 52.9
ATR0680G220 Amborella trichopoda HOM05D006237 ORTHO05D002967 2.8e-08 63.9 70 52.9
arahy.Tifrunner.gnm1.ann1.B3F3VS Arachis hypogaea HOM05D006237 ORTHO05D002967 2.8e-08 63.9 70 51.4
arahy.Tifrunner.gnm1.ann1.C9TN30 Arachis hypogaea HOM05D006237 ORTHO05D002967 2.8e-08 63.9 70 51.4
HanXRQChr02g0055961 Helianthus annuus HOM05D006237 ORTHO05D002967 2.8e-08 63.9 70 51.4
PSO566G0038 Papaver somniferum HOM05D006237 ORTHO05D002967 2.8e-08 63.9 70 55.7
TAR629G2491 Trochodendron aralioides HOM05D006237 ORTHO05D002967 2.8e-08 63.9 70 52.9
EL10Ac2g03563 Beta vulgaris HOM05D006237 ORTHO05D002967 3.7e-08 63.5 76 50.0
C04p69260 Brassica napus HOM05D010908 ORTHO05D013188 3.7e-08 63.5 86 43.0
Nitab4.5_0005550g0040 Nicotiana tabacum HOM05D006237 ORTHO05D002967 3.7e-08 63.5 70 52.9
Sed0010472 Sechium edule HOM05D006237 ORTHO05D002967 3.7e-08 63.5 70 54.3
BcaC02g07288 Brassica carinata HOM05D010908 ORTHO05D013188 4.8e-08 63.2 84 44.0
BolC4t28426H Brassica oleracea HOM05D010908 ORTHO05D013188 4.8e-08 63.2 84 44.0
Duzib128G1632 Durio zibethinus HOM05D006237 ORTHO05D002967 4.8e-08 63.2 70 54.3
Thecc.05G176100 Theobroma cacao HOM05D006237 ORTHO05D002967 4.8e-08 63.2 70 54.3
GSVIVG01036122001 Vitis vinifera HOM05D006237 ORTHO05D002967 4.8e-08 63.2 70 51.4
Aqoxy7G01479 Aquilegia oxysepala HOM05D006237 ORTHO05D002967 6.3e-08 62.8 70 54.3
Lalb_Chr01g0001091 Lupinus albus HOM05D006237 ORTHO05D002967 6.3e-08 62.8 70 50.0
Zm00001eb329680 Zea mays HOM05D006237 ORTHO05D002967 6.3e-08 62.8 70 52.9
Lalb_Chr19g0139751 Lupinus albus HOM05D006237 ORTHO05D002967 1.1e-07 62.0 70 48.6
PSO173G0153 Papaver somniferum HOM05D006237 ORTHO05D002967 1.4e-07 61.6 70 54.3
SEGI_03568 Sequoiadendron giganteum HOM05D006237 ORTHO05D002967 1.8e-07 61.2 70 50.0
Nn1g09125 Nelumbo nucifera HOM05D006237 ORTHO05D002967 3.1e-07 60.5 70 50.0
CDE06G2505 Ceratophyllum demersum HOM05D003460 ORTHO05D004277 5.3e-07 59.7 70 51.4
BcaB01g00753 Brassica carinata HOM05D002075 ORTHO05D001225 1.5e-06 58.2 71 49.3


User provided reference genes

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