Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB06g29166 Brassica carinata HOM05D005421 ORTHO05D007601 1.5e-112 410.2 332 100.0
BcaC02g07328 Brassica carinata HOM05D005421 ORTHO05D007601 2.0e-101 373.2 339 88.2
A04p31080 Brassica napus HOM05D005421 ORTHO05D007601 1.4e-99 367.1 344 89.2
BcaC01g05387 Brassica carinata HOM05D005421 ORTHO05D007601 2.5e-99 366.3 349 87.7
C04p68470 Brassica napus HOM05D005421 ORTHO05D007601 7.2e-99 364.8 350 85.4
C03p27110 Brassica napus HOM05D005421 ORTHO05D007601 9.4e-99 364.4 351 87.5
BolC3t15092H Brassica oleracea HOM05D005421 ORTHO05D007601 9.4e-99 364.4 351 87.5
BraA03t11510Z Brassica rapa HOM05D005421 ORTHO05D007601 1.6e-98 363.6 353 88.7
BcaB01g03524 Brassica carinata HOM05D005421 ORTHO05D007601 4.7e-98 362.1 353 87.3
Sp4g22980 Schrenkiella parvula HOM05D005421 ORTHO05D007601 7.9e-98 361.3 353 87.5
CARHR135760 Cardamine hirsuta HOM05D005421 ORTHO05D007601 3.3e-96 355.9 190 91.1
AL4G38520 Arabidopsis lyrata HOM05D005421 ORTHO05D007601 7.4e-96 354.8 354 87.0
Aa31LG3G1470 Aethionema arabicum HOM05D005421 ORTHO05D007601 9.7e-96 354.4 190 88.9
AT2G40650 Arabidopsis thaliana HOM05D005421 ORTHO05D007601 2.8e-95 352.8 190 90.0
Carub.0004s2294 Capsella rubella HOM05D005421 ORTHO05D007601 4.8e-95 352.1 190 90.0
A03p22860 Brassica napus HOM05D005421 ORTHO05D007601 8.2e-95 351.3 374 83.4
BolC4t28347H Brassica oleracea HOM05D005421 ORTHO05D007601 1.8e-94 350.1 218 81.7
BraA04t18563Z Brassica rapa HOM05D005421 ORTHO05D007601 3.1e-94 349.4 211 83.4
THA.LOC104820733 Tarenaya hassleriana HOM05D005421 ORTHO05D007601 2.5e-91 339.7 190 84.7
THA.LOC104805907 Tarenaya hassleriana HOM05D005421 ORTHO05D007601 4.2e-91 339.0 190 85.3
Sabra13G0010600 Salix brachista HOM05D005421 ORTHO05D007601 6.1e-90 335.1 190 83.7
RcHm_v2.0_Chr3g0456541 Rosa chinensis HOM05D005421 ORTHO05D007601 1.0e-89 334.3 190 83.2
Cfa006671 Carpinus fangiana HOM05D005421 ORTHO05D007601 2.3e-89 333.2 190 83.2
FvH4_6g07010 Fragaria vesca HOM05D005421 ORTHO05D007601 2.3e-89 333.2 190 82.6
FAN05G0688 Fragaria x ananassa HOM05D005421 ORTHO05D007601 2.3e-89 333.2 190 82.6
Potri.013G012000 Populus trichocarpa HOM05D005421 ORTHO05D007601 2.3e-89 333.2 190 83.2
Eucgr.H03270 Eucalyptus grandis HOM05D005421 ORTHO05D007601 3.0e-89 332.8 189 84.1
MD12G1209800 Malus domestica HOM05D005421 ORTHO05D007601 3.0e-89 332.8 190 82.6
Manes.13G000084 Manihot esculenta HOM05D005421 ORTHO05D007601 3.9e-89 332.4 190 83.2
Haze_04100 Corylus avellana HOM05D005421 ORTHO05D007601 5.2e-89 332.0 190 82.6
FAN14G1909 Fragaria x ananassa HOM05D005421 ORTHO05D007601 5.2e-89 332.0 190 82.1
PSO170G1114 Papaver somniferum HOM05D005421 ORTHO05D007601 1.1e-88 330.9 190 81.6
PSO407G0035 Papaver somniferum HOM05D005421 ORTHO05D007601 1.1e-88 330.9 190 81.6
QL03p018920 Quercus lobata HOM05D005421 ORTHO05D007601 1.1e-88 330.9 190 82.1
CANSAT54G2596 Cannabis sativa HOM05D005421 ORTHO05D007601 1.5e-88 330.5 190 82.6
Ciclev10001489m.g Citrus clementina HOM05D005421 ORTHO05D007601 1.5e-88 330.5 190 83.2
MD04G1196900 Malus domestica HOM05D005421 ORTHO05D007601 1.5e-88 330.5 190 82.1
Prupe.1G236900 Prunus persica HOM05D005421 ORTHO05D007601 1.5e-88 330.5 190 81.6
Thecc.06G040900 Theobroma cacao HOM05D005421 ORTHO05D007601 2.0e-88 330.1 190 82.1
HanXRQChr01g0011821 Helianthus annuus HOM05D005421 ORTHO05D007601 3.3e-88 329.3 190 82.1
Lalb_Chr02g0148011 Lupinus albus HOM05D005421 ORTHO05D007601 3.3e-88 329.3 190 81.6
CiPaw.07G025400 Carya illinoinensis HOM05D005421 ORTHO05D007601 7.4e-88 328.2 190 81.6
ClCG02G015170 Citrullus lanatus HOM05D005421 ORTHO05D007601 7.4e-88 328.2 190 81.6
MELO3C004206.2 Cucumis melo HOM05D005421 ORTHO05D007601 7.4e-88 328.2 190 82.1
SGA_v2.0_scaffold4G01947 Striga asiatica HOM05D005421 ORTHO05D007601 9.7e-88 327.8 343 72.0
PGR031G1007 Punica granatum HOM05D005421 ORTHO05D007601 1.3e-87 327.4 189 82.5
ECA236G4663 Erigeron canadensis HOM05D005421 ORTHO05D007601 1.7e-87 327.0 190 81.6
Medtr1g083720 Medicago truncatula HOM05D005421 ORTHO05D007601 1.7e-87 327.0 190 81.6
TWI12G1149 Tripterygium wilfordii HOM05D005421 ORTHO05D007601 1.7e-87 327.0 190 80.5
Glyma.10G149900 Glycine max HOM05D005421 ORTHO05D007601 2.2e-87 326.6 190 80.0
CSS0007056 Camellia sinensis var. sinensis HOM05D005421 ORTHO05D007601 2.8e-87 326.2 190 81.6
CSS0046729 Camellia sinensis var. sinensis HOM05D005421 ORTHO05D007601 2.8e-87 326.2 190 81.6
Glyma.20G238500 Glycine max HOM05D005421 ORTHO05D007601 3.7e-87 325.9 190 80.0
Sed0018701 Sechium edule HOM05D005421 ORTHO05D007601 3.7e-87 325.9 190 81.1
CsaV3_2G006840 Cucumis sativus L. HOM05D005421 ORTHO05D007601 4.8e-87 325.5 190 81.1
Lsat_1_v5_gn_7_73220 Lactuca sativa HOM05D005421 ORTHO05D007601 4.8e-87 325.5 190 80.0
Migut.B01005 Erythranthe guttata HOM05D005421 ORTHO05D007601 6.3e-87 325.1 190 81.1
Gohir.A10G155100 Gossypium hirsutum HOM05D005421 ORTHO05D007601 6.3e-87 325.1 190 81.6
Gohir.D10G110800 Gossypium hirsutum HOM05D005421 ORTHO05D007601 6.3e-87 325.1 190 81.6
Gorai.011G122100 Gossypium raimondii HOM05D005421 ORTHO05D007601 6.3e-87 325.1 190 81.6
Lj5g0011296 Lotus japonicus HOM05D005421 ORTHO05D007601 8.2e-87 324.7 189 80.4
Psat6g151720 Pisum sativum HOM05D005421 ORTHO05D007601 1.1e-86 324.3 190 80.5
TAR636G1951 Trochodendron aralioides HOM05D005421 ORTHO05D007601 1.1e-86 324.3 189 80.4
HPP92_020212 Vanilla planifolia HOM05D005421 ORTHO05D007601 1.1e-86 324.3 190 82.1
HPP92_020232 Vanilla planifolia HOM05D005421 ORTHO05D007601 1.1e-86 324.3 190 82.1
Atru.chr2.115 Acer truncatum HOM05D005421 ORTHO05D007601 1.4e-86 323.9 190 80.5
Peaxi162Scf00037g01816 Petunia axillaris HOM05D005421 ORTHO05D007601 1.8e-86 323.6 190 79.5
Phvul.007G199400 Phaseolus vulgaris HOM05D005421 ORTHO05D007601 1.8e-86 323.6 190 80.0
Cpa.g.sc48.125 Carica papaya HOM05D005421 ORTHO05D007601 2.4e-86 323.2 190 81.1
DCAR_004503 Daucus carota HOM05D005421 ORTHO05D007601 2.4e-86 323.2 190 79.5
Aqoxy2G02863 Aquilegia oxysepala HOM05D005421 ORTHO05D007601 3.1e-86 322.8 190 80.5
FAN02G3486 Fragaria x ananassa HOM05D005421 ORTHO05D007601 3.1e-86 322.8 204 77.5
Lalb_Chr21g0310441 Lupinus albus HOM05D005421 ORTHO05D007601 4.1e-86 322.4 188 79.8
CAN.G1273.26 Capsicum annuum HOM05D005421 ORTHO05D007601 7.0e-86 321.6 190 80.0
Ah.04g161240 Amaranthus hybridus HOM05D005421 ORTHO05D007601 9.1e-86 321.2 190 81.1
AUR62005243 Chenopodium quinoa HOM05D005421 ORTHO05D007601 9.1e-86 321.2 190 80.5
Ca_10154_v3 Cicer arietinum L. HOM05D005421 ORTHO05D007601 9.1e-86 321.2 189 79.9
Ca_29832_v3 Cicer arietinum L. HOM05D005421 ORTHO05D007601 9.1e-86 321.2 189 79.9
Duzib150G0691 Durio zibethinus HOM05D005421 ORTHO05D007601 9.1e-86 321.2 190 81.6
Nitab4.5_0001971g0070 Nicotiana tabacum HOM05D005421 ORTHO05D007601 9.1e-86 321.2 190 78.4
Nitab4.5_0002612g0040 Nicotiana tabacum HOM05D005421 ORTHO05D007601 9.1e-86 321.2 190 78.4
Actinidia35540 Actinidia chinensis HOM05D005421 ORTHO05D007601 1.2e-85 320.9 190 78.4
VMungo0720G1843 Vigna mungo HOM05D005421 ORTHO05D007601 2.0e-85 320.1 188 79.8
EL10Ac4g09870 Beta vulgaris HOM05D005421 ORTHO05D007601 2.6e-85 319.7 190 80.5
Hund07118 Selenicereus undatus HOM05D005421 ORTHO05D007601 3.5e-85 319.3 190 80.0
PGSC0003DMG400024728 Solanum tuberosum HOM05D005421 ORTHO05D007601 3.5e-85 319.3 190 78.4
GSVIVG01031188001 Vitis vinifera HOM05D005421 ORTHO05D007601 5.9e-85 318.5 189 78.8
Cc02_g34540 Coffea canephora HOM05D005421 ORTHO05D007601 1.0e-84 317.8 189 79.9
SalBow1G5723 Salvia bowleyana HOM05D005421 ORTHO05D007601 1.0e-84 317.8 189 80.4
Dinv30846 Davidia involucrata HOM05D005421 ORTHO05D007601 1.7e-84 317.0 190 79.5
Solyc01g100060.4 Solanum lycopersicum HOM05D005421 ORTHO05D007601 1.7e-84 317.0 190 77.9
Sopen01g043590 Solanum pennellii HOM05D005421 ORTHO05D007601 1.7e-84 317.0 190 77.9
Zm00001eb095730 Zea mays HOM05D005421 ORTHO05D007601 3.8e-84 315.8 190 79.5
Sc16g0008670 Simmondsia chinensis HOM05D005421 ORTHO05D007601 5.0e-84 315.5 190 78.9
COL.COLO4_26689 Corchorus olitorius HOM05D005421 ORTHO05D007601 3.2e-83 312.8 190 79.5
MBI18_g04564_MAGBIO Magnolia biondii HOM05D005421 ORTHO05D007601 3.2e-83 312.8 189 77.2
TWI56G0052 Tripterygium wilfordii HOM05D005421 ORTHO05D007601 5.5e-83 312.0 208 72.1
Os09g0103600 Oryza sativa ssp. japonica HOM05D005421 ORTHO05D007601 7.2e-83 311.6 190 77.9
CDE02G0330 Ceratophyllum demersum HOM05D005421 ORTHO05D007601 3.6e-82 309.3 189 76.7
Mapoly0138s0022 Marchantia polymorpha HOM05D005421 ORTHO05D007601 2.0e-80 303.5 190 75.3
Nitab4.5_0003248g0020 Nicotiana tabacum HOM05D005421 ORTHO05D007601 2.8e-79 299.7 190 73.7
Rhsim11G0092200 Rhododendron simsii HOM05D005421 ORTHO05D007601 3.7e-79 299.3 239 64.0
AagrBONN_evm.TU.Sc2ySwM_117.208 Anthoceros agrestis HOM05D005421 ORTHO05D007601 1.8e-78 297.0 190 73.2
Oeu045895.1 Olea europaea HOM05D005421 ORTHO05D007601 1.8e-78 297.0 208 71.2
SMO361G0640 Selaginella moellendorffii HOM05D005421 ORTHO05D007601 3.1e-78 296.2 190 74.2
vmacro01533 Vaccinium macrocarpon HOM05D005421 ORTHO05D007601 3.1e-78 296.2 242 63.2
CBR_g27792 Chara braunii HOM05D005421 ORTHO05D007601 5.3e-78 295.4 190 73.2
AUR62000721 Chenopodium quinoa HOM05D005421 ORTHO05D007601 5.9e-77 292.0 166 81.9
Pp3c1_35390 Physcomitrium patens HOM05D005421 ORTHO05D007601 1.0e-76 291.2 189 72.5
arahy.Tifrunner.gnm1.ann1.1MC3I0 Arachis hypogaea HOM05D005421 ORTHO05D007601 1.9e-75 287.0 203 70.0
COL.COLO4_07356 Corchorus olitorius HOM05D005421 ORTHO05D007601 2.5e-75 286.6 166 79.5
arahy.Tifrunner.gnm1.ann1.MB2RBZ Arachis hypogaea HOM05D005421 ORTHO05D007601 1.2e-74 284.3 199 70.4
TWI38G1969 Tripterygium wilfordii HOM05D005421 ORTHO05D007601 2.3e-73 280.0 190 70.0
Dinv24409 Davidia involucrata HOM05D005421 ORTHO05D007601 1.5e-72 277.3 155 84.5
FAN09G4258 Fragaria x ananassa HOM05D000389 ORTHO05D000287 2.8e-71 273.1 155 82.6
Nn4g25707 Nelumbo nucifera HOM05D005421 ORTHO05D007601 1.9e-67 260.4 190 69.5
Cre12.g503400 Chlamydomonas reinhardtii HOM05D005421 ORTHO05D007601 4.0e-65 252.7 190 61.6
Peaxi162Scf00404g00814 Petunia axillaris HOM05D005421 ORTHO05D007601 1.8e-62 243.8 186 66.1
MCO01G394 Micromonas commoda HOM05D005421 ORTHO05D007601 1.7e-55 220.7 177 58.2
Haze_27467 Corylus avellana HOM05D005421 ORTHO05D007601 1.1e-49 201.4 184 52.2
PRCOL_00004539 Prasinoderma coloniale HOM05D005421 ORTHO05D007601 5.8e-48 195.7 192 51.6
Potri.005G021600 Populus trichocarpa HOM05D005421 ORTHO05D007601 2.3e-44 183.7 139 66.9
Lj9C202T10 Lonicera japonica HOM05D005421 ORTHO05D007601 2.9e-39 166.8 97 78.4
SEGI_13779 Sequoiadendron giganteum HOM05D005421 ORTHO05D007601 1.1e-35 154.8 94 75.5
Prupe.6G317400 Prunus persica HOM05D005421 ORTHO05D007601 1.6e-34 151.0 95 73.7
Lj9A202T65 Lonicera japonica HOM05D005421 ORTHO05D007601 6.2e-34 149.1 93 74.2
SEGI_07889 Sequoiadendron giganteum HOM05D005421 ORTHO05D007601 3.2e-22 110.2 90 61.1
ATR0469G001 Amborella trichopoda HOM05D005421 ORTHO05D007601 6.0e-21 105.9 68 70.6
ATR1164G001 Amborella trichopoda HOM05D005421 ORTHO05D007601 6.0e-21 105.9 68 70.6
TAR362G1077 Trochodendron aralioides HOM05D005421 ORTHO05D026565 3.5e-13 80.1 52 73.1
BcaB06g27834 Brassica carinata HOM05D005421 ORTHO05D031867 1.8e-12 77.8 69 60.9
RcHm_v2.0_Chr7g0209371 Rosa chinensis HOM05D005421 ORTHO05D007601 8.7e-12 75.5 53 58.5
BcaB06g29165 Brassica carinata HOM05D011401 ORTHO05D018605 7.4e-11 72.4 118 43.2
Lj3g0025046 Lotus japonicus HOM05D005421 ORTHO05D026565 9.6e-11 72.0 60 61.7
BcaB06g29163 Brassica carinata HOM05D005421 ORTHO05D031077 1.5e-08 64.7 189 67.2
Dinv05263 Davidia involucrata HOM05D002902 ORTHO05D008934 7.6e-08 62.4 42 66.7
BcaB06g29159 Brassica carinata HOM05D005421 ORTHO05D031077 1.9e-06 57.8 30 90.0
ATR0693G223 Amborella trichopoda HOM05D005421 ORTHO05D031077 2.5e-06 57.4 27 92.6


User provided reference genes

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