Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB06g29139 Brassica carinata HOM05D004762 ORTHO05D005972 8.4e-61 236.9 124 100.0
Sp4g22540 Schrenkiella parvula HOM05D004762 ORTHO05D005972 3.9e-50 201.4 116 92.2
BraA04t18511Z Brassica rapa HOM05D004762 ORTHO05D001193 5.7e-49 197.6 116 89.7
BraA05t19588Z Brassica rapa HOM05D004762 ORTHO05D005972 6.3e-48 194.1 112 89.3
A05p06240 Brassica napus HOM05D004762 ORTHO05D005972 1.1e-47 193.4 112 88.4
Carub.0004s2241 Capsella rubella HOM05D004762 ORTHO05D005972 1.1e-47 193.4 120 84.2
BcaC02g12138 Brassica carinata HOM05D004762 ORTHO05D005972 1.4e-47 193.0 112 89.3
C04p07190 Brassica napus HOM05D004762 ORTHO05D005972 1.4e-47 193.0 112 89.3
BolC4t22343H Brassica oleracea HOM05D004762 ORTHO05D005972 1.4e-47 193.0 112 89.3
Thhalv10016619m.g Eutrema salsugineum HOM05D004762 ORTHO05D005972 2.4e-47 192.2 108 92.6
AT2G40190 Arabidopsis thaliana HOM05D004762 ORTHO05D005972 1.5e-46 189.5 112 86.6
BcaB02g09041 Brassica carinata HOM05D004762 ORTHO05D005972 2.0e-46 189.1 112 86.6
AL108U10020 Arabidopsis lyrata HOM05D004762 ORTHO05D005972 7.7e-46 187.2 112 85.7
AL4G37920 Arabidopsis lyrata HOM05D004762 ORTHO05D005972 7.7e-46 187.2 112 85.7
Aa31LG5G19380 Aethionema arabicum HOM05D004762 ORTHO05D005972 1.4e-44 183.0 112 82.1
Sc10g0002460 Simmondsia chinensis HOM05D004762 ORTHO05D005972 1.1e-39 166.8 114 74.6
A04p29970 Brassica napus HOM05D004762 ORTHO05D001193 1.8e-39 166.0 97 91.8
CSS0039953 Camellia sinensis var. sinensis HOM05D004762 ORTHO05D005972 5.9e-38 161.0 118 70.3
CSS0044129 Camellia sinensis var. sinensis HOM05D004762 ORTHO05D005972 5.9e-38 161.0 118 70.3
vmacro06958 Vaccinium macrocarpon HOM05D004762 ORTHO05D005972 1.0e-37 160.2 110 72.7
GSVIVG01032791001 Vitis vinifera HOM05D004762 ORTHO05D005972 1.0e-37 160.2 110 73.6
Sabra15G0114600 Salix brachista HOM05D004762 ORTHO05D005972 1.3e-37 159.8 110 73.6
Manes.07G131500 Manihot esculenta HOM05D004762 ORTHO05D005972 1.7e-37 159.5 106 76.4
Solyc10g076800.2 Solanum lycopersicum HOM05D004762 ORTHO05D005972 1.7e-37 159.5 111 71.2
PGSC0003DMG400019183 Solanum tuberosum HOM05D004762 ORTHO05D005972 1.7e-37 159.5 111 71.2
CAN.G1087.1 Capsicum annuum HOM05D004762 ORTHO05D005972 2.9e-37 158.7 116 68.1
Ciclev10031450m.g Citrus clementina HOM05D004762 ORTHO05D005972 5.0e-37 157.9 116 69.0
Potri.012G095500 Populus trichocarpa HOM05D004762 ORTHO05D005972 5.0e-37 157.9 110 70.9
Prupe.2G252400 Prunus persica HOM05D004762 ORTHO05D005972 5.0e-37 157.9 110 72.7
CAN.G1305.22 Capsicum annuum HOM05D004762 ORTHO05D005972 6.5e-37 157.5 116 67.2
Sed0015827 Sechium edule HOM05D004762 ORTHO05D005972 6.5e-37 157.5 109 75.2
TPR.G15355 Trifolium pratense HOM05D004762 ORTHO05D005972 6.5e-37 157.5 106 73.6
Rhsim03G0145100 Rhododendron simsii HOM05D004762 ORTHO05D005972 8.5e-37 157.1 110 71.8
Cfa001301 Carpinus fangiana HOM05D004762 ORTHO05D005972 1.1e-36 156.8 116 70.7
RcHm_v2.0_Chr1g0370541 Rosa chinensis HOM05D004762 ORTHO05D005972 1.1e-36 156.8 109 72.5
BcaB01g03555 Brassica carinata HOM05D004762 ORTHO05D005972 1.4e-36 156.4 100 84.0
CiPaw.01G300200 Carya illinoinensis HOM05D004762 ORTHO05D005972 1.4e-36 156.4 116 69.8
Gohir.D06G056233 Gossypium hirsutum HOM05D004762 ORTHO05D005972 1.4e-36 156.4 110 71.8
Nitab4.5_0013304g0010 Nicotiana tabacum HOM05D004762 ORTHO05D005972 1.4e-36 156.4 116 67.2
Peaxi162Scf00284g00722 Petunia axillaris HOM05D004762 ORTHO05D005972 1.4e-36 156.4 116 68.1
Thecc.10G014000 Theobroma cacao HOM05D004762 ORTHO05D005972 1.4e-36 156.4 110 73.6
TWI09G1175 Tripterygium wilfordii HOM05D004762 ORTHO05D005972 1.4e-36 156.4 110 73.6
TAR636G3670 Trochodendron aralioides HOM05D004762 ORTHO05D005972 1.4e-36 156.4 116 69.8
Haze_17244 Corylus avellana HOM05D004762 ORTHO05D005972 1.9e-36 156.0 117 69.2
FvH4_7g24680 Fragaria vesca HOM05D004762 ORTHO05D005972 1.9e-36 156.0 109 71.6
FAN06G2944 Fragaria x ananassa HOM05D004762 ORTHO05D005972 1.9e-36 156.0 109 71.6
FAN10G2322 Fragaria x ananassa HOM05D004762 ORTHO05D005972 1.9e-36 156.0 109 71.6
Psat4g160680 Pisum sativum HOM05D004762 ORTHO05D005972 1.9e-36 156.0 108 71.3
COL.COLO4_23625 Corchorus olitorius HOM05D004762 ORTHO05D005972 2.5e-36 155.6 110 73.6
ECA238G4598 Erigeron canadensis HOM05D001399 ORTHO05D001670 2.5e-36 155.6 112 69.6
Hma1.2p1_0523F.1_g172170 Hydrangea macrophylla HOM05D004762 ORTHO05D005972 2.5e-36 155.6 110 70.0
CsaV3_5G010300 Cucumis sativus L. HOM05D004762 ORTHO05D005972 3.2e-36 155.2 105 77.1
Hma1.2p1_0145F.1_g065350 Hydrangea macrophylla HOM05D004762 ORTHO05D005972 3.2e-36 155.2 110 70.9
TWI53G2041 Tripterygium wilfordii HOM05D004762 ORTHO05D005972 3.2e-36 155.2 110 71.8
Hma1.2p1_2705F.1_g327160 Hydrangea macrophylla HOM05D004762 ORTHO05D005972 4.2e-36 154.8 110 70.9
Lj8A64T49 Lonicera japonica HOM05D004762 ORTHO05D005972 4.2e-36 154.8 110 71.8
arahy.Tifrunner.gnm1.ann1.YY9F0M Arachis hypogaea HOM05D004762 ORTHO05D005972 5.5e-36 154.5 106 74.5
MD01G1154800 Malus domestica HOM05D004762 ORTHO05D005972 5.5e-36 154.5 108 72.2
COL.COLO4_25767 Corchorus olitorius HOM05D004762 ORTHO05D005972 7.2e-36 154.1 110 72.7
FAN01G2296 Fragaria x ananassa HOM05D004762 ORTHO05D005972 7.2e-36 154.1 109 70.6
Lj3g0010190 Lotus japonicus HOM05D004762 ORTHO05D005972 7.2e-36 154.1 108 72.2
Nitab4.5_0006049g0030 Nicotiana tabacum HOM05D004762 ORTHO05D005972 7.2e-36 154.1 112 67.9
Gorai.013G017200 Gossypium raimondii HOM05D004762 ORTHO05D005972 9.4e-36 153.7 106 73.6
arahy.Tifrunner.gnm1.ann1.BGVI4S Arachis hypogaea HOM05D004762 ORTHO05D005972 1.2e-35 153.3 108 72.2
arahy.Tifrunner.gnm1.ann1.NBD53L Arachis hypogaea HOM05D004762 ORTHO05D005972 1.2e-35 153.3 108 72.2
ClCG07G004360 Citrullus lanatus HOM05D004762 ORTHO05D005972 1.2e-35 153.3 109 73.4
Lsat_1_v5_gn_2_124101 Lactuca sativa HOM05D004762 ORTHO05D005972 1.2e-35 153.3 110 71.8
MD07G1223900 Malus domestica HOM05D004762 ORTHO05D005972 1.2e-35 153.3 108 72.2
PSO478G3676 Papaver somniferum HOM05D004762 ORTHO05D005972 1.2e-35 153.3 112 66.1
PSO675G7276 Papaver somniferum HOM05D004762 ORTHO05D005972 1.2e-35 153.3 112 65.2
Lalb_Chr04g0254441 Lupinus albus HOM05D004762 ORTHO05D005972 1.6e-35 152.9 116 69.0
Medtr8g027750 Medicago truncatula HOM05D004762 ORTHO05D005972 1.6e-35 152.9 112 68.8
Atru.BG.273.p Acer truncatum HOM05D004762 ORTHO05D005972 2.1e-35 152.5 110 72.7
Nitab4.5_0000797g0010 Nicotiana tabacum HOM05D004762 ORTHO05D005972 2.1e-35 152.5 112 67.0
PSO017G1441 Papaver somniferum HOM05D004762 ORTHO05D005972 2.1e-35 152.5 110 65.5
QL06p052059 Quercus lobata HOM05D004762 ORTHO05D005972 2.7e-35 152.1 110 70.9
Glyma.16G025200 Glycine max HOM05D004762 ORTHO05D005972 4.7e-35 151.4 108 71.3
Gohir.D13G015700 Gossypium hirsutum HOM05D004762 ORTHO05D005972 4.7e-35 151.4 106 72.6
HanXRQChr14g0459541 Helianthus annuus HOM05D004762 ORTHO05D005972 6.1e-35 151.0 114 67.5
PSO017G5956 Papaver somniferum HOM05D004762 ORTHO05D005972 6.1e-35 151.0 112 63.4
Duzib106G1587 Durio zibethinus HOM05D004762 ORTHO05D005972 7.9e-35 150.6 110 69.1
Nn1g09364 Nelumbo nucifera HOM05D004762 ORTHO05D005972 7.9e-35 150.6 114 67.5
Oeu011273.2 Olea europaea HOM05D004762 ORTHO05D005972 7.9e-35 150.6 114 65.8
Phvul.010G113600 Phaseolus vulgaris HOM05D004762 ORTHO05D005972 7.9e-35 150.6 106 72.6
SalBow6G6782 Salvia bowleyana HOM05D004762 ORTHO05D005972 7.9e-35 150.6 109 66.1
Oeu043882.1 Olea europaea HOM05D004762 ORTHO05D005972 1.0e-34 150.2 110 69.1
VMungo0331G1989 Vigna mungo HOM05D004762 ORTHO05D005972 1.0e-34 150.2 106 72.6
EL10Ac2g04854 Beta vulgaris HOM05D004762 ORTHO05D005972 1.4e-34 149.8 110 67.3
CDE02G4330 Ceratophyllum demersum HOM05D004762 ORTHO05D005972 1.4e-34 149.8 108 67.6
Ca_23540_v3 Cicer arietinum L. HOM05D004762 ORTHO05D005972 1.4e-34 149.8 108 71.3
Eucgr.G03076 Eucalyptus grandis HOM05D004762 ORTHO05D005972 1.4e-34 149.8 110 69.1
Glyma.07G056300 Glycine max HOM05D004762 ORTHO05D005972 1.8e-34 149.4 106 72.6
AUR62022908 Chenopodium quinoa HOM05D004762 ORTHO05D005972 3.0e-34 148.7 110 66.4
AUR62012271 Chenopodium quinoa HOM05D004762 ORTHO05D005972 3.9e-34 148.3 110 67.3
HPP92_020134 Vanilla planifolia HOM05D004762 ORTHO05D005972 3.9e-34 148.3 108 67.6
CANSAT56G2662 Cannabis sativa HOM05D004762 ORTHO05D005972 1.5e-33 146.4 110 65.5
PGR142G3177 Punica granatum HOM05D004762 ORTHO05D005972 1.5e-33 146.4 106 69.8
Cc08_g07190 Coffea canephora HOM05D004762 ORTHO05D005972 2.6e-33 145.6 110 65.5
Migut.F00664 Erythranthe guttata HOM05D004762 ORTHO05D005972 2.6e-33 145.6 106 69.8
Aqoxy7G00585 Aquilegia oxysepala HOM05D004762 ORTHO05D005972 7.4e-33 144.1 112 64.3
ATR0580G181 Amborella trichopoda HOM05D004762 ORTHO05D005972 1.3e-32 143.3 110 64.5
Hund15913 Selenicereus undatus HOM05D004762 ORTHO05D005972 2.8e-32 142.1 108 66.7
Aqoxy4G02489 Aquilegia oxysepala HOM05D004762 ORTHO05D005972 4.8e-32 141.4 120 62.5
Os12g0583000 Oryza sativa ssp. japonica HOM05D004762 ORTHO05D005972 4.8e-32 141.4 109 65.1
FAN03G0495 Fragaria x ananassa HOM05D004762 ORTHO05D005972 3.1e-31 138.7 95 72.6
SEGI_20752 Sequoiadendron giganteum HOM05D004762 ORTHO05D005972 3.1e-31 138.7 108 62.0
CBR_g12682 Chara braunii HOM05D004762 ORTHO05D005972 7.0e-31 137.5 112 61.6
unitig_748.g8448 Utricularia gibba HOM05D004762 ORTHO05D005972 1.6e-30 136.3 106 62.3
QL11p009420 Quercus lobata HOM05D004762 ORTHO05D005972 2.0e-30 136.0 99 72.7
AagrBONN_evm.TU.Sc2ySwM_228.3247 Anthoceros agrestis HOM05D004762 ORTHO05D005972 2.6e-30 135.6 106 62.3
Potri.015G093000 Populus trichocarpa HOM05D004762 ORTHO05D005972 2.6e-30 135.6 110 64.5
Mapoly0096s0017 Marchantia polymorpha HOM05D004762 ORTHO05D005972 3.5e-30 135.2 108 65.7
Zm00001eb030250 Zea mays HOM05D004762 ORTHO05D005972 1.0e-29 133.7 113 57.5
DCAR_007786 Daucus carota HOM05D004762 ORTHO05D005972 1.9e-28 129.4 96 66.7
DCAR_024818 Daucus carota HOM05D004762 ORTHO05D005972 1.9e-28 129.4 113 56.6
TAR633G0702 Trochodendron aralioides HOM05D003030 ORTHO05D003610 3.2e-28 128.6 93 69.9
EL10Ac2g03328 Beta vulgaris HOM05D004762 ORTHO05D005972 7.2e-28 127.5 103 66.0
SMO358G0322 Selaginella moellendorffii HOM05D004762 ORTHO05D005972 9.4e-28 127.1 104 62.5
Pp3c14_26870 Physcomitrium patens HOM05D004762 ORTHO05D005972 2.7e-27 125.6 116 54.3
Gohir.A13G014500 Gossypium hirsutum HOM05D004762 ORTHO05D005972 8.8e-26 120.6 106 61.3
EL10Ac6g13956 Beta vulgaris HOM05D004762 ORTHO05D005972 6.3e-24 114.4 87 65.5
BcaC01g05421 Brassica carinata HOM05D002909 ORTHO05D000493 5.3e-23 111.3 71 85.9
C03p26800 Brassica napus HOM05D000223 ORTHO05D001193 5.3e-23 111.3 71 85.9
BolC3t15065H Brassica oleracea HOM05D000223 ORTHO05D001193 5.3e-23 111.3 71 85.9
Gorai.004G138800 Gossypium raimondii HOM05D004762 ORTHO05D005972 1.6e-22 109.8 110 56.4
Gohir.D08G135600 Gossypium hirsutum HOM05D004762 ORTHO05D005972 7.7e-22 107.5 110 54.5
SGA_v2.0_scaffold60G20982 Striga asiatica HOM05D004762 ORTHO05D005972 7.2e-20 100.9 74 64.9
MCO10G125 Micromonas commoda HOM05D004762 ORTHO05D005972 6.8e-18 94.4 136 44.1
Cre01.g058521 Chlamydomonas reinhardtii HOM05D004762 ORTHO05D005972 1.2e-17 93.6 184 35.3
PRCOL_00001728 Prasinoderma coloniale HOM05D004762 ORTHO05D005972 3.4e-17 92.0 96 54.2
EL10Ac6g14685 Beta vulgaris HOM05D004762 ORTHO05D005972 2.8e-16 89.0 119 46.2
Nitab4.5_0001180g0090 Nicotiana tabacum HOM05D004762 ORTHO05D005972 5.9e-14 81.3 62 61.3
EL10Ac3g06411 Beta vulgaris HOM05D004762 ORTHO05D005972 7.2e-12 74.3 102 50.0
Actinidia33916 Actinidia chinensis HOM05D004762 ORTHO05D005972 2.1e-11 72.8 44 79.5
Haze_26859 Corylus avellana HOM05D004762 ORTHO05D005972 3.6e-11 72.0 110 39.1
Nitab4.5_0004804g0050 Nicotiana tabacum HOM05D004762 ORTHO05D005972 1.3e-08 63.5 55 54.5
BcaC02g12136 Brassica carinata HOM05D004762 ORTHO05D005972 1.8e-07 59.7 36 80.6
Gohir.D05G318650 Gossypium hirsutum HOM05D004762 ORTHO05D005972 3.1e-07 58.9 37 78.4
Gorai.012G079400 Gossypium raimondii HOM05D004762 ORTHO05D046822 3.1e-07 58.9 37 78.4
Gohir.D07G108366 Gossypium hirsutum HOM05D004762 ORTHO05D046822 9.2e-07 57.4 37 75.7


User provided reference genes

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