Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB06g28933 Brassica carinata HOM05D006439 ORTHO05D008152 0.0e+00 1919.8 976 100.0
BcaC02g07604 Brassica carinata HOM05D006439 ORTHO05D008152 0.0e+00 1660.6 973 87.9
BolC4t28018H Brassica oleracea HOM05D006439 ORTHO05D008152 0.0e+00 1638.2 976 87.0
A04p27880 Brassica napus HOM05D006439 ORTHO05D008152 0.0e+00 1584.3 915 88.7
BraA04t18280Z Brassica rapa HOM05D006439 ORTHO05D008152 0.0e+00 1583.5 915 88.3
AL4G32530 Arabidopsis lyrata HOM05D006439 ORTHO05D008152 0.0e+00 1384.0 997 73.7
Thhalv10017885m.g Eutrema salsugineum HOM05D006439 ORTHO05D008152 0.0e+00 1375.5 935 76.3
AT2G36370 Arabidopsis thaliana HOM05D006439 ORTHO05D008152 0.0e+00 1361.3 997 72.3
CARHR130670 Cardamine hirsuta HOM05D006439 ORTHO05D008152 0.0e+00 1297.0 975 71.0
Sp4g18660 Schrenkiella parvula HOM05D006439 ORTHO05D008152 0.0e+00 1211.8 815 78.9
Aa31LG5G21550 Aethionema arabicum HOM05D006439 ORTHO05D008152 0.0e+00 1170.6 989 64.9
THA.LOC104823488 Tarenaya hassleriana HOM05D006439 ORTHO05D008152 0.0e+00 1132.9 1000 59.9
Gorai.007G371000 Gossypium raimondii HOM05D006439 ORTHO05D008152 2.5e-264 916.0 1011 49.2
QL07p039851 Quercus lobata HOM05D006439 ORTHO05D008152 1.3e-260 903.7 1007 49.5
Prupe.7G115000 Prunus persica HOM05D006439 ORTHO05D008152 2.0e-258 896.3 1007 48.7
MD12G1021400 Malus domestica HOM05D006439 ORTHO05D008152 1.0e-257 894.0 1004 49.4
CiPaw.09G010200 Carya illinoinensis HOM05D006439 ORTHO05D008152 2.5e-256 889.4 1006 48.4
TWI74G0883 Tripterygium wilfordii HOM05D006439 ORTHO05D008152 6.7e-254 881.3 1007 48.9
Cfa016567 Carpinus fangiana HOM05D006439 ORTHO05D008152 1.1e-251 874.0 1000 48.1
GSVIVG01033817001 Vitis vinifera HOM05D006439 ORTHO05D008152 7.7e-250 867.8 1047 46.5
Gohir.A11G321900 Gossypium hirsutum HOM05D006439 ORTHO05D008152 3.8e-249 865.5 951 49.2
Hma1.2p1_0232F.1_g097640 Hydrangea macrophylla HOM05D006439 ORTHO05D008152 1.5e-245 853.6 1006 46.7
Manes.08G022900 Manihot esculenta HOM05D006439 ORTHO05D008152 7.7e-242 841.3 1006 46.3
FAN02G3052 Fragaria x ananassa HOM05D006439 ORTHO05D008152 6.1e-239 831.6 1078 44.5
Duzib093G0471 Durio zibethinus HOM05D006439 ORTHO05D008152 1.7e-236 823.5 1022 45.1
Lalb_Chr01g0018261 Lupinus albus HOM05D006439 ORTHO05D008152 1.7e-236 823.5 1012 45.3
Medtr7g104170 Medicago truncatula HOM05D006439 ORTHO05D008152 1.6e-234 817.0 1003 44.8
arahy.Tifrunner.gnm1.ann1.YQ8CLY Arachis hypogaea HOM05D006439 ORTHO05D008152 2.0e-234 816.6 1032 44.5
Lj1g0012097 Lotus japonicus HOM05D006439 ORTHO05D008152 3.5e-234 815.8 1007 44.2
Phvul.001G188000 Phaseolus vulgaris HOM05D006439 ORTHO05D008152 2.2e-233 813.1 1009 44.2
TPR.G19544 Trifolium pratense HOM05D006439 ORTHO05D008152 6.5e-233 811.6 1004 45.1
Psat3g034720 Pisum sativum HOM05D006439 ORTHO05D008152 8.5e-233 811.2 1011 44.9
arahy.Tifrunner.gnm1.ann1.JQB9X3 Arachis hypogaea HOM05D006439 ORTHO05D008152 9.4e-232 807.7 1041 43.7
Glyma.03G192900 Glycine max HOM05D006439 ORTHO05D008152 6.1e-231 805.1 1012 43.8
Gohir.D11G340900 Gossypium hirsutum HOM05D006439 ORTHO05D008152 2.2e-225 786.6 883 48.7
Sopen10g035010 Solanum pennellii HOM05D006439 ORTHO05D008152 2.2e-225 786.6 990 43.6
Solyc10g085600.2 Solanum lycopersicum HOM05D006439 ORTHO05D008152 2.5e-224 783.1 993 43.3
FAN14G3294 Fragaria x ananassa HOM05D006439 ORTHO05D008152 1.4e-222 777.3 1030 44.6
HanXRQChr09g0247281 Helianthus annuus HOM05D006439 ORTHO05D008152 7.7e-218 761.5 997 44.8
Migut.L01768 Erythranthe guttata HOM05D006439 ORTHO05D008152 4.4e-213 745.7 973 43.6
Haze_19565 Corylus avellana HOM05D006439 ORTHO05D008152 2.4e-211 740.0 1023 42.9
Cc06_g05440 Coffea canephora HOM05D006439 ORTHO05D008152 6.6e-209 731.9 949 43.6
ECA233G3232 Erigeron canadensis HOM05D006439 ORTHO05D008152 7.3e-208 728.4 979 42.7
Peaxi162Scf00146g00718 Petunia axillaris HOM05D006439 ORTHO05D008152 4.0e-206 722.6 953 42.7
Lsat_1_v5_gn_6_69500 Lactuca sativa HOM05D006439 ORTHO05D008152 1.3e-204 717.6 991 42.6
Nn2g14057 Nelumbo nucifera HOM05D006439 ORTHO05D008152 9.2e-203 711.4 987 42.0
PSO384G3820 Papaver somniferum HOM05D006439 ORTHO05D008152 5.0e-201 705.7 974 41.7
Carub.0004s1817 Capsella rubella HOM05D006439 ORTHO05D008152 3.1e-198 696.4 500 74.2
SGA_v2.0_scaffold184G39949 Striga asiatica HOM05D006439 ORTHO05D008152 2.9e-196 689.9 1075 39.0
Oeu034357.1 Olea europaea HOM05D006439 ORTHO05D008152 1.8e-190 670.6 1043 39.6
RcHm_v2.0_Chr3g0472491 Rosa chinensis HOM05D006439 ORTHO05D008152 6.4e-188 662.1 793 47.5
Sc07g0005420 Simmondsia chinensis HOM05D006439 ORTHO05D008152 7.8e-186 655.2 895 42.5
Actinidia31281 Actinidia chinensis HOM05D006439 ORTHO05D008152 1.3e-185 654.4 851 43.8
Cpa.g.sc5.59 Carica papaya HOM05D006439 ORTHO05D008152 3.1e-182 643.3 960 42.8
FvH4_6g18170 Fragaria vesca HOM05D006439 ORTHO05D008152 7.6e-181 638.6 1005 38.6
EL10Ac7g16960 Beta vulgaris HOM05D006439 ORTHO05D008152 1.9e-179 634.0 906 41.3
Ciclev10011131m.g Citrus clementina HOM05D006439 ORTHO05D008152 1.4e-174 617.8 755 45.6
AUR62028585 Chenopodium quinoa HOM05D006439 ORTHO05D008152 1.3e-172 611.3 895 40.1
Ca_08981_v3 Cicer arietinum L. HOM05D006439 ORTHO05D008152 2.2e-172 610.5 822 43.2
CAN.G1099.9 Capsicum annuum HOM05D006439 ORTHO05D008152 2.9e-172 610.1 757 45.0
Thecc.05G084500 Theobroma cacao HOM05D006439 ORTHO05D008152 6.4e-172 609.0 688 49.9
SalBow5G0766 Salvia bowleyana HOM05D006439 ORTHO05D008152 4.3e-168 596.3 835 41.7
PGR142G3529 Punica granatum HOM05D006439 ORTHO05D008152 4.0e-166 589.7 865 41.5
Carub.0004s1816 Capsella rubella HOM05D006439 ORTHO05D008152 1.1e-160 571.6 418 70.6
Os01g0968600 Oryza sativa ssp. japonica HOM05D006439 ORTHO05D008152 1.4e-158 564.7 997 36.1
VMungo1383G0775 Vigna mungo HOM05D006439 ORTHO05D008152 1.7e-156 557.8 714 45.8
Ah.15g091040 Amaranthus hybridus HOM05D006439 ORTHO05D008152 1.6e-154 551.2 860 39.3
Nitab4.5_0000381g0240 Nicotiana tabacum HOM05D006439 ORTHO05D008152 2.5e-147 527.3 800 39.0
vmacro08831 Vaccinium macrocarpon HOM05D006439 ORTHO05D008152 1.2e-138 498.4 656 43.3
Aqoxy2G01352 Aquilegia oxysepala HOM05D006439 ORTHO05D008152 4.2e-131 473.4 694 40.8
DCAR_009146 Daucus carota HOM05D006439 ORTHO05D008152 9.4e-131 472.2 888 35.9
HPP92_005462 Vanilla planifolia HOM05D006439 ORTHO05D008152 2.4e-126 457.6 1008 32.8
Atru.chr8.1601 Acer truncatum HOM05D006439 ORTHO05D008152 7.0e-126 456.1 515 48.9
Atru.chr8.1600 Acer truncatum HOM05D006439 ORTHO05D008152 6.7e-121 439.5 499 46.7
PSO801G0048 Papaver somniferum HOM05D006439 ORTHO05D008152 1.1e-120 438.7 792 37.4
TAR623G1631 Trochodendron aralioides HOM05D006439 ORTHO05D008152 6.8e-113 412.9 545 45.0
Dinv21235 Davidia involucrata HOM05D000103 ORTHO05D008152 7.0e-102 376.3 441 48.5
Rhsim04G0133900 Rhododendron simsii HOM05D006439 ORTHO05D008152 1.0e-97 362.5 371 50.1
Zm00001eb139990 Zea mays HOM05D006439 ORTHO05D008152 2.2e-95 354.8 606 37.5
Dinv21234 Davidia involucrata HOM05D006439 ORTHO05D008152 2.0e-93 348.2 421 45.4
Pp3c16_1040 Physcomitrium patens HOM05D006439 ORTHO05D008152 2.6e-88 331.3 1009 27.5
CSS0038647 Camellia sinensis var. sinensis HOM05D006439 ORTHO05D008152 1.6e-85 322.0 315 52.1
QL11p044009 Quercus lobata HOM05D006439 ORTHO05D009270 5.0e-84 317.0 522 38.5
MBI17_g23163_MAGBIO Magnolia biondii HOM05D006439 ORTHO05D008152 2.1e-77 295.0 857 29.4
Nitab4.5_0005447g0020 Nicotiana tabacum HOM05D006439 ORTHO05D008152 2.7e-69 268.1 475 34.9
Mapoly0116s0006 Marchantia polymorpha HOM05D006439 ORTHO05D008152 5.2e-65 253.8 1003 24.0
Lj3A1001T30 Lonicera japonica HOM05D006439 ORTHO05D008152 3.5e-61 241.1 246 51.6
VMungo1383G1144 Vigna mungo HOM05D006439 ORTHO05D008152 3.1e-57 228.0 243 43.2
RcHm_v2.0_Chr3g0472501 Rosa chinensis HOM05D006439 ORTHO05D008152 7.6e-56 223.4 180 57.8
AagrBONN_evm.TU.Sc2ySwM_117.1948 Anthoceros agrestis HOM05D006439 ORTHO05D008152 1.2e-53 216.1 952 25.5
SMO238G0046 Selaginella moellendorffii HOM05D006439 ORTHO05D008152 7.4e-51 206.8 684 27.3
AL4G34520 Arabidopsis lyrata HOM05D006439 ORTHO05D008152 2.6e-48 198.4 235 51.1
QL07p039868 Quercus lobata HOM05D006439 ORTHO05D008152 1.9e-46 192.2 229 47.2
Ciclev10013912m.g Citrus clementina HOM05D006439 ORTHO05D008152 6.0e-45 187.2 205 48.8
Lj3A1001T29 Lonicera japonica HOM05D006439 ORTHO05D008152 7.4e-43 180.3 323 39.0
PGSC0003DMG402008399 Solanum tuberosum HOM05D006439 ORTHO05D008152 9.6e-43 179.9 204 45.1
Lj3A1001G26 Lonicera japonica HOM05D006439 ORTHO05D008152 1.6e-42 179.1 202 44.6
SEGI_26522 Sequoiadendron giganteum HOM05D006439 ORTHO05D000001 1.2e-40 172.9 206 43.2
VMungo1127G2301 Vigna mungo HOM05D006439 ORTHO05D008152 3.2e-30 138.3 242 36.8
Aqoxy2G01351 Aquilegia oxysepala HOM05D006439 ORTHO05D008152 1.9e-27 129.0 153 37.9
AL4G34560 Arabidopsis lyrata HOM05D006439 ORTHO05D008152 4.8e-26 124.4 133 50.4
CSS0030357 Camellia sinensis var. sinensis HOM05D006439 ORTHO05D008152 3.4e-24 118.2 172 44.2
TAR623G0848 Trochodendron aralioides HOM05D006439 ORTHO05D008152 1.0e-23 116.7 105 46.7
SEGI_31112 Sequoiadendron giganteum HOM05D006439 ORTHO05D008152 2.9e-23 115.2 307 30.3
CAN.G1099.8 Capsicum annuum HOM05D006439 ORTHO05D008152 8.5e-23 113.6 161 37.9
Nitab4.5_0000381g0270 Nicotiana tabacum HOM05D006502 ORTHO05D007704 3.2e-22 111.7 156 39.7
FAN09G3024 Fragaria x ananassa HOM05D006439 ORTHO05D008152 4.2e-22 111.3 159 41.5
Lj3A1001T31 Lonicera japonica HOM05D006439 ORTHO05D008152 4.2e-22 111.3 100 54.0
SEGI_37059 Sequoiadendron giganteum HOM05D006439 ORTHO05D008152 1.2e-21 109.8 187 36.4
AUR62028586 Chenopodium quinoa HOM05D006439 ORTHO05D008152 1.5e-19 102.8 98 51.0
Thecc.10G111400 Theobroma cacao HOM05D006439 ORTHO05D008152 3.1e-17 95.1 75 57.3
SEGI_02684 Sequoiadendron giganteum HOM05D006439 ORTHO05D008152 2.2e-15 89.0 104 44.2
CSS0006664 Camellia sinensis var. sinensis HOM05D006439 ORTHO05D008152 6.7e-12 77.4 94 44.7
SEGI_31670 Sequoiadendron giganteum HOM05D006439 ORTHO05D008152 8.2e-10 70.5 119 31.1
AUR62033535 Chenopodium quinoa HOM05D006439 ORTHO05D008152 5.3e-09 67.8 70 51.4
Glyma.19G193000 Glycine max HOM05D006439 ORTHO05D046803 3.5e-08 65.1 76 43.4
CSS0035414 Camellia sinensis var. sinensis HOM05D006439 ORTHO05D008152 5.9e-08 64.3 70 44.3
AL4G34300 Arabidopsis lyrata HOM05D006439 ORTHO05D008152 1.0e-07 63.5 76 52.6
Pp3c17_7680 Physcomitrium patens HOM05D000530 ORTHO05D003341 2.2e-07 62.4 314 24.8
ClCG03G015120 Citrullus lanatus HOM05D003317 ORTHO05D003696 1.1e-06 60.1 342 27.5
CAN.G955.3 Capsicum annuum HOM05D002125 ORTHO05D002105 2.5e-06 58.9 410 23.9
SGA_v2.0_scaffold70G23559 Striga asiatica HOM05D000051 ORTHO05D000015 3.2e-06 58.5 124 36.3
BcaC09g50005 Brassica carinata HOM05D001905 ORTHO05D001820 4.2e-06 58.2 344 23.0
A01p24280 Brassica napus HOM05D001905 ORTHO05D001820 4.2e-06 58.2 344 23.5
C01p30100 Brassica napus HOM05D001905 ORTHO05D001820 4.2e-06 58.2 344 23.0
BolC1t02954H Brassica oleracea HOM05D001905 ORTHO05D001820 4.2e-06 58.2 344 23.0
BraA01t02341Z Brassica rapa HOM05D001905 ORTHO05D001820 4.2e-06 58.2 344 23.5
Lj1g0014420 Lotus japonicus HOM05D006439 ORTHO05D046803 5.5e-06 57.8 71 40.8
Ah.08g209960 Amaranthus hybridus HOM05D002125 ORTHO05D002105 9.4e-06 57.0 401 21.4
SEGI_01774 Sequoiadendron giganteum HOM05D006439 ORTHO05D008152 9.4e-06 57.0 75 38.7


User provided reference genes

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