Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB06g28844 Brassica carinata HOM05D005694 ORTHO05D007402 4.3e-234 814.3 417 100.0
BcaC05g29844 Brassica carinata HOM05D005694 ORTHO05D007402 2.5e-205 718.8 417 89.4
BolC5t34672H Brassica oleracea HOM05D005694 ORTHO05D007402 2.5e-205 718.8 417 89.4
C05p60220 Brassica napus HOM05D005694 ORTHO05D007402 3.7e-201 704.9 442 84.2
BraA05t22832Z Brassica rapa HOM05D005694 ORTHO05D007402 3.7e-201 704.9 417 87.8
A05p41050 Brassica napus HOM05D005694 ORTHO05D007402 2.3e-195 685.6 383 90.6
Carub.0008s2721 Capsella rubella HOM05D005694 ORTHO05D007402 3.8e-190 668.3 417 83.0
Thhalv10004317m.g Eutrema salsugineum HOM05D005694 ORTHO05D007402 8.5e-190 667.2 417 83.2
CARHR280330 Cardamine hirsuta HOM05D005694 ORTHO05D007402 3.2e-189 665.2 418 83.0
AT5G67290 Arabidopsis thaliana HOM05D005694 ORTHO05D007402 6.1e-188 661.0 417 83.0
Sp2g29370 Schrenkiella parvula HOM05D005694 ORTHO05D007402 2.3e-187 659.1 382 88.2
AL8G44040 Arabidopsis lyrata HOM05D005694 ORTHO05D007402 2.0e-186 656.0 375 87.5
Aa31LG1G15820 Aethionema arabicum HOM05D005694 ORTHO05D007402 4.0e-171 605.1 380 79.5
Prupe.6G229100 Prunus persica HOM05D005694 ORTHO05D007402 1.0e-163 580.5 407 72.2
THA.LOC104819246 Tarenaya hassleriana HOM05D005694 ORTHO05D007402 6.8e-163 577.8 372 75.8
Gorai.007G218000 Gossypium raimondii HOM05D005694 ORTHO05D007402 3.4e-162 575.5 402 72.4
Thecc.01G063300 Theobroma cacao HOM05D005694 ORTHO05D007402 4.4e-162 575.1 425 70.1
Duzib264G0643 Durio zibethinus HOM05D005694 ORTHO05D007402 1.3e-161 573.5 383 74.2
Gohir.D11G203300 Gossypium hirsutum HOM05D005694 ORTHO05D007402 4.9e-161 571.6 383 73.6
COL.COLO4_11482 Corchorus olitorius HOM05D005694 ORTHO05D007402 8.3e-161 570.9 425 68.5
RcHm_v2.0_Chr2g0106661 Rosa chinensis HOM05D005694 ORTHO05D007402 3.3e-157 558.9 409 71.1
Cpa.g.sc6.99 Carica papaya HOM05D005694 ORTHO05D007402 4.3e-157 558.5 413 70.0
Lj4g0009127 Lotus japonicus HOM05D005694 ORTHO05D007402 7.3e-157 557.8 366 73.8
FvH4_1g16760 Fragaria vesca HOM05D005694 ORTHO05D007402 1.6e-156 556.6 407 70.8
Ciclev10025664m.g Citrus clementina HOM05D005694 ORTHO05D007402 6.1e-156 554.7 429 66.4
MELO3C007585.2 Cucumis melo HOM05D005694 ORTHO05D007402 2.3e-155 552.7 417 67.1
Haze_15351 Corylus avellana HOM05D005694 ORTHO05D007402 1.2e-154 550.4 420 67.6
FAN23G2399 Fragaria x ananassa HOM05D005694 ORTHO05D007402 1.2e-154 550.4 407 69.8
Hund16366 Selenicereus undatus HOM05D005694 ORTHO05D007402 3.4e-154 548.9 408 68.6
Cfa004061 Carpinus fangiana HOM05D005694 ORTHO05D007402 1.7e-153 546.6 424 66.7
Solyc03g044190.3 Solanum lycopersicum HOM05D005694 ORTHO05D007402 2.9e-153 545.8 387 68.7
Sopen03g008170 Solanum pennellii HOM05D005694 ORTHO05D007402 2.9e-153 545.8 387 68.7
ClCG01G017080 Citrullus lanatus HOM05D005694 ORTHO05D007402 1.1e-152 543.9 421 67.2
Glyma.17G167200 Glycine max HOM05D005694 ORTHO05D007402 1.1e-152 543.9 418 66.0
CsaV3_6G043550 Cucumis sativus L. HOM05D005694 ORTHO05D007402 1.4e-152 543.5 416 66.3
FAN19G0282 Fragaria x ananassa HOM05D005694 ORTHO05D007402 2.4e-152 542.7 407 69.5
Oeu037163.1 Olea europaea HOM05D005694 ORTHO05D007402 4.1e-152 542.0 375 69.1
FAN26G1197 Fragaria x ananassa HOM05D005694 ORTHO05D007402 5.4e-152 541.6 407 69.3
Sabra05G0051000 Salix brachista HOM05D005694 ORTHO05D007402 5.4e-152 541.6 416 67.3
arahy.Tifrunner.gnm1.ann1.ZT89Y7 Arachis hypogaea HOM05D005694 ORTHO05D007402 7.0e-152 541.2 410 67.1
MD02G1178800 Malus domestica HOM05D005694 ORTHO05D007402 9.2e-152 540.8 356 74.4
Lsat_1_v5_gn_3_88661 Lactuca sativa HOM05D005694 ORTHO05D007402 5.9e-151 538.1 382 69.6
QL06p040237 Quercus lobata HOM05D005694 ORTHO05D007402 5.9e-151 538.1 420 66.4
Ca_22124_v3 Cicer arietinum L. HOM05D005694 ORTHO05D007402 1.0e-150 537.3 375 70.7
SGA_v2.0_scaffold143G35788 Striga asiatica HOM05D005694 ORTHO05D007402 1.0e-150 537.3 377 68.7
HanXRQChr12g0377261 Helianthus annuus HOM05D005694 ORTHO05D007402 2.3e-150 536.2 368 70.7
Potri.005G060500 Populus trichocarpa HOM05D005694 ORTHO05D007402 3.0e-150 535.8 370 71.1
MSTRG.2849 Avicennia marina HOM05D005694 ORTHO05D007402 1.1e-149 533.9 386 67.9
PGR004G1079 Punica granatum HOM05D005694 ORTHO05D007402 1.1e-149 533.9 424 65.3
CiPaw.01G012900 Carya illinoinensis HOM05D005694 ORTHO05D007402 1.5e-149 533.5 420 66.4
Duzib147G1433 Durio zibethinus HOM05D005694 ORTHO05D007402 1.9e-149 533.1 381 69.8
Atru.chr3.251 Acer truncatum HOM05D005694 ORTHO05D007402 4.3e-149 531.9 379 68.3
EL10Ac6g15690 Beta vulgaris HOM05D005694 ORTHO05D007402 5.6e-149 531.6 411 67.2
Psat4g084360 Pisum sativum HOM05D005694 ORTHO05D007402 7.3e-149 531.2 398 66.6
Sed0004561 Sechium edule HOM05D005694 ORTHO05D007402 7.3e-149 531.2 412 66.7
PGSC0003DMG400014873 Solanum tuberosum HOM05D005694 ORTHO05D007402 1.2e-148 530.4 375 69.1
Nitab4.5_0002657g0010 Nicotiana tabacum HOM05D005694 ORTHO05D007402 2.8e-148 529.3 391 67.3
CANSAT25G2140 Cannabis sativa HOM05D005694 ORTHO05D007402 3.6e-148 528.9 420 65.7
AUR62003938 Chenopodium quinoa HOM05D005694 ORTHO05D007402 3.6e-148 528.9 418 65.8
Manes.12G108400 Manihot esculenta HOM05D005694 ORTHO05D007402 8.0e-148 527.7 418 66.3
AUR62038254 Chenopodium quinoa HOM05D005694 ORTHO05D007402 1.0e-147 527.3 390 66.4
CANSAT25G0291 Cannabis sativa HOM05D005694 ORTHO05D007402 1.8e-147 526.6 418 65.8
Medtr4g094962 Medicago truncatula HOM05D005694 ORTHO05D007402 2.3e-147 526.2 400 67.0
Peaxi162Scf00365g00618 Petunia axillaris HOM05D005694 ORTHO05D007402 3.1e-147 525.8 374 69.0
Gohir.A11G220300 Gossypium hirsutum HOM05D005694 ORTHO05D007402 4.0e-147 525.4 428 65.2
Lalb_Chr16g0388811 Lupinus albus HOM05D005694 ORTHO05D007402 6.8e-147 524.6 376 67.6
Migut.H00394 Erythranthe guttata HOM05D005694 ORTHO05D007402 1.2e-146 523.9 372 68.8
Phvul.003G240300 Phaseolus vulgaris HOM05D005694 ORTHO05D007402 1.2e-146 523.9 413 65.6
VMungo0251G0564 Vigna mungo HOM05D005694 ORTHO05D007402 3.4e-146 522.3 412 64.3
Nitab4.5_0003962g0030 Nicotiana tabacum HOM05D005694 ORTHO05D007402 2.2e-145 519.6 408 64.7
TPR.G23863 Trifolium pratense HOM05D005694 ORTHO05D007402 4.9e-145 518.5 412 64.1
arahy.Tifrunner.gnm1.ann1.MA1EVV Arachis hypogaea HOM05D005694 ORTHO05D007402 2.4e-144 516.2 477 58.1
PSO541G0377 Papaver somniferum HOM05D005694 ORTHO05D007402 2.4e-144 516.2 371 66.6
ECA246G1807 Erigeron canadensis HOM05D005694 ORTHO05D007402 4.1e-144 515.4 361 69.0
Aqoxy6G02871 Aquilegia oxysepala HOM05D005694 ORTHO05D007402 3.0e-142 509.2 433 61.4
CSS0006569 Camellia sinensis var. sinensis HOM05D005694 ORTHO05D007402 3.0e-142 509.2 360 70.0
Rhsim10G0112600 Rhododendron simsii HOM05D005694 ORTHO05D007402 3.0e-142 509.2 404 64.6
Glyma.05G097800 Glycine max HOM05D005694 ORTHO05D007402 5.0e-142 508.4 398 66.3
Actinidia12019 Actinidia chinensis HOM05D005694 ORTHO05D007402 3.3e-141 505.8 356 70.2
Nn1g04704 Nelumbo nucifera HOM05D005694 ORTHO05D007402 4.0e-139 498.8 357 68.9
Eucgr.I00787 Eucalyptus grandis HOM05D005694 ORTHO05D007402 2.0e-138 496.5 382 67.8
Eucgr.I00761 Eucalyptus grandis HOM05D005694 ORTHO05D007402 2.6e-138 496.1 382 68.1
TAR625G0317 Trochodendron aralioides HOM05D005694 ORTHO05D007402 3.4e-138 495.7 379 66.0
PSO675G2151 Papaver somniferum HOM05D005694 ORTHO05D007402 7.5e-138 494.6 421 60.8
DCAR_025759 Daucus carota HOM05D005694 ORTHO05D007402 1.3e-137 493.8 347 69.5
Lj4g0018653 Lotus japonicus HOM05D005694 ORTHO05D007402 1.3e-137 493.8 369 68.3
Sc16g0005230 Simmondsia chinensis HOM05D005694 ORTHO05D007402 6.4e-137 491.5 376 63.8
unitig_46.g18707 Utricularia gibba HOM05D005694 ORTHO05D007402 5.4e-136 488.4 377 63.7
TAR381G0027 Trochodendron aralioides HOM05D005694 ORTHO05D007402 1.2e-135 487.3 365 67.1
TAR381G0285 Trochodendron aralioides HOM05D005694 ORTHO05D007402 1.2e-135 487.3 365 67.1
TAR625G0863 Trochodendron aralioides HOM05D005694 ORTHO05D007402 1.9e-133 479.9 367 65.9
Dinv26866 Davidia involucrata HOM05D005694 ORTHO05D007402 6.2e-132 474.9 367 66.5
Cc11_g04760 Coffea canephora HOM05D005694 ORTHO05D007402 8.1e-132 474.6 380 62.6
ATR1098G030 Amborella trichopoda HOM05D005694 ORTHO05D007402 3.4e-130 469.2 366 64.2
Sc16g0005220 Simmondsia chinensis HOM05D005694 ORTHO05D007402 1.5e-125 453.8 376 60.4
CDE06G0326 Ceratophyllum demersum HOM05D005694 ORTHO05D007402 4.0e-123 445.7 363 62.0
vmacro05254 Vaccinium macrocarpon HOM05D005694 ORTHO05D007402 1.7e-121 440.3 426 56.6
Zm00001eb300250 Zea mays HOM05D005694 ORTHO05D007402 1.2e-119 434.1 379 60.9
Os07g0155100 Oryza sativa ssp. japonica HOM05D005694 ORTHO05D007402 1.0e-118 431.0 380 59.2
AagrBONN_evm.TU.Sc2ySwM_117.3787 Anthoceros agrestis HOM05D005694 ORTHO05D007402 4.3e-117 425.6 392 58.2
HPP92_017733 Vanilla planifolia HOM05D005694 ORTHO05D007402 7.3e-117 424.9 369 60.2
Mapoly0178s0017 Marchantia polymorpha HOM05D005694 ORTHO05D007402 4.8e-116 422.2 373 57.9
SEGI_26559 Sequoiadendron giganteum HOM05D005694 ORTHO05D007402 1.4e-115 420.6 368 58.4
Pp3c14_12180 Physcomitrium patens HOM05D005694 ORTHO05D007402 6.9e-115 418.3 374 60.2
Dinv30033 Davidia involucrata HOM05D005694 ORTHO05D007402 9.0e-115 417.9 356 60.7
HanXRQChr02g0044351 Helianthus annuus HOM05D005694 ORTHO05D007402 1.6e-111 407.1 376 57.2
SMO351G0208 Selaginella moellendorffii HOM05D005694 ORTHO05D007402 6.7e-110 401.7 369 55.8
ECA238G4251 Erigeron canadensis HOM05D005694 ORTHO05D007402 9.0e-107 391.3 373 56.3
SMO367G0384 Selaginella moellendorffii HOM05D005694 ORTHO05D007402 2.0e-106 390.2 375 54.1
Aa31LG1G15830 Aethionema arabicum HOM05D005694 ORTHO05D007402 2.4e-104 383.3 227 80.6
Lj7C77T1 Lonicera japonica HOM05D005694 ORTHO05D007402 3.5e-95 352.8 289 65.4
SEGI_01647 Sequoiadendron giganteum HOM05D005694 ORTHO05D007402 4.3e-93 345.9 374 50.8
HPP92_017700 Vanilla planifolia HOM05D005694 ORTHO05D007402 5.7e-93 345.5 315 57.8
CAN.G572.58 Capsicum annuum HOM05D005694 ORTHO05D007402 5.0e-89 332.4 268 61.9
Mapoly0178s0018 Marchantia polymorpha HOM05D005694 ORTHO05D007402 2.5e-88 330.1 315 55.2
Cre16.g671450 Chlamydomonas reinhardtii HOM05D005694 ORTHO05D007402 4.2e-80 302.8 389 46.0
FAN28G1711 Fragaria x ananassa HOM05D005694 ORTHO05D007402 2.5e-72 276.9 172 74.4
FAN28G1889 Fragaria x ananassa HOM05D005694 ORTHO05D007402 2.5e-72 276.9 172 74.4
MCO03G407 Micromonas commoda HOM05D005694 ORTHO05D007402 2.6e-66 256.9 390 41.5
Actinidia36463 Actinidia chinensis HOM05D005694 ORTHO05D007402 1.3e-52 211.5 166 60.8
MCO09G374 Micromonas commoda HOM05D005694 ORTHO05D007402 1.4e-51 208.0 431 36.2
Aa31LG1G15840 Aethionema arabicum HOM05D005694 ORTHO05D007402 1.2e-47 194.9 161 72.7
Aa31sc2295G20 Aethionema arabicum HOM05D005694 ORTHO05D007402 2.0e-45 187.6 130 73.8
Lj7A77T5 Lonicera japonica HOM05D005694 ORTHO05D007402 5.9e-42 176.0 147 59.9
Aa31LG1G18440 Aethionema arabicum HOM05D005694 ORTHO05D007402 8.6e-41 172.2 192 55.2
Cfa023451 Carpinus fangiana HOM05D000115 ORTHO05D005317 2.6e-37 160.6 405 33.3
Medtr8g072720 Medicago truncatula HOM05D005694 ORTHO05D007402 5.8e-29 132.9 83 74.7
PRCOL_00002834 Prasinoderma coloniale HOM05D005694 ORTHO05D007402 1.6e-26 124.8 389 30.6
Aa31LG1G18450 Aethionema arabicum HOM05D005694 ORTHO05D007402 1.6e-15 88.2 73 60.3
Aa31sc2295G10 Aethionema arabicum HOM05D005694 ORTHO05D007402 1.6e-15 88.2 73 60.3
BcaC07g37383 Brassica carinata HOM05D005694 ORTHO05D031998 1.1e-14 85.5 110 49.1
BolC8t47687H Brassica oleracea HOM05D005694 ORTHO05D031998 1.1e-14 85.5 110 49.1
BolC8t47689H Brassica oleracea HOM05D005694 ORTHO05D031998 1.1e-14 85.5 110 49.1
BcaNung00805 Brassica carinata HOM05D005694 ORTHO05D007402 6.8e-14 82.8 96 54.2
Os01g0594800 Oryza sativa ssp. japonica HOM05D005694 ORTHO05D007402 2.7e-10 70.9 98 44.9
Cfa026332 Carpinus fangiana HOM05D005694 ORTHO05D123404 2.3e-09 67.8 340 23.8
Pp3s34_420 Physcomitrium patens HOM05D000198 ORTHO05D309562 2.4e-06 57.8 389 23.7


User provided reference genes

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