Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB06g28796 Brassica carinata HOM05D003539 ORTHO05D004111 0.0e+00 1139.4 597 100.0
A04p26550 Brassica napus HOM05D003539 ORTHO05D004111 3.2e-307 1057.7 606 92.1
BraA04t18159Z Brassica rapa HOM05D003539 ORTHO05D004111 1.5e-304 1048.9 634 88.2
BraA03t11183Z Brassica rapa HOM05D003539 ORTHO05D004111 2.8e-271 938.3 616 81.5
BolC3t14644H Brassica oleracea HOM05D003539 ORTHO05D004111 4.8e-271 937.6 611 82.0
A03p19290 Brassica napus HOM05D003539 ORTHO05D004111 8.2e-271 936.8 616 81.3
C03p22480 Brassica napus HOM05D003539 ORTHO05D004111 1.2e-269 932.9 611 81.8
Sp4g17040 Schrenkiella parvula HOM05D003539 ORTHO05D004111 5.9e-261 904.0 612 79.2
Thhalv10016395m.g Eutrema salsugineum HOM05D003539 ORTHO05D004111 8.5e-260 900.2 618 79.3
AL4G30740 Arabidopsis lyrata HOM05D003539 ORTHO05D004111 1.0e-241 840.1 615 71.9
AT2G34750 Arabidopsis thaliana HOM05D003539 ORTHO05D004111 2.3e-241 839.0 615 73.5
CARHR128910 Cardamine hirsuta HOM05D003539 ORTHO05D004111 8.3e-239 830.5 613 73.4
Carub.0004s1644 Capsella rubella HOM05D003539 ORTHO05D004111 3.6e-234 815.1 615 69.4
Aa31LG10G6570 Aethionema arabicum HOM05D003539 ORTHO05D004111 1.3e-231 806.6 626 68.7
C04p14010 Brassica napus HOM05D003539 ORTHO05D004111 1.5e-227 793.1 616 72.7
BolC4t22991H Brassica oleracea HOM05D003539 ORTHO05D004111 7.3e-227 790.8 621 72.1
BraA05t20035Z Brassica rapa HOM05D003539 ORTHO05D004111 9.2e-222 773.9 611 70.2
Thhalv10007103m.g Eutrema salsugineum HOM05D003539 ORTHO05D004111 9.2e-222 773.9 610 67.0
Aa31LG6G11830 Aethionema arabicum HOM05D003539 ORTHO05D004111 9.2e-214 747.3 612 68.3
AL1G44630 Arabidopsis lyrata HOM05D003539 ORTHO05D004111 1.1e-209 733.8 616 64.1
C04p63970 Brassica napus HOM05D003539 ORTHO05D004111 2.6e-208 729.2 442 86.4
THA.LOC104814350 Tarenaya hassleriana HOM05D003539 ORTHO05D004111 5.4e-206 721.5 613 64.6
Carub.0001s2885 Capsella rubella HOM05D003539 ORTHO05D004111 2.4e-201 706.1 592 65.0
BcaC02g11551 Brassica carinata HOM05D003539 ORTHO05D004111 6.9e-201 704.5 632 66.1
BcaC01g05764 Brassica carinata HOM05D003539 ORTHO05D004111 5.8e-200 701.4 606 66.8
AT1G30590 Arabidopsis thaliana HOM05D003539 ORTHO05D004111 9.0e-193 677.6 610 61.5
AL4G35010 Arabidopsis lyrata HOM05D003539 ORTHO05D004111 9.7e-179 630.9 593 60.5
Carub.0004s2129 Capsella rubella HOM05D003539 ORTHO05D004111 5.0e-175 618.6 613 59.4
GSVIVG01026448001 Vitis vinifera HOM05D003539 ORTHO05D004111 1.6e-173 613.6 610 53.4
Eucgr.J02557 Eucalyptus grandis HOM05D003539 ORTHO05D004111 4.8e-170 602.1 632 52.5
Atru.chr3.55 Acer truncatum HOM05D003539 ORTHO05D004111 1.2e-168 597.4 623 51.5
Dinv40214 Davidia involucrata HOM05D003539 ORTHO05D004111 5.9e-168 595.1 626 51.8
PGR044G1248 Punica granatum HOM05D003539 ORTHO05D004111 7.7e-168 594.7 614 51.6
Gohir.D03G066500 Gossypium hirsutum HOM05D003539 ORTHO05D004111 1.4e-164 583.9 613 53.2
TWI79G1391 Tripterygium wilfordii HOM05D003539 ORTHO05D004111 1.4e-164 583.9 615 51.7
Gorai.003G064600 Gossypium raimondii HOM05D003539 ORTHO05D004111 3.9e-164 582.4 613 53.0
Dinv28297 Davidia involucrata HOM05D003539 ORTHO05D004111 7.4e-163 578.2 628 51.0
Hma1.2p1_0085F.1_g044410 Hydrangea macrophylla HOM05D003539 ORTHO05D004111 4.8e-162 575.5 631 51.3
TAR381G1444 Trochodendron aralioides HOM05D003539 ORTHO05D004111 4.8e-162 575.5 623 49.9
CSS0035723 Camellia sinensis var. sinensis HOM05D003539 ORTHO05D004111 8.2e-162 574.7 626 51.9
Nn5g28137 Nelumbo nucifera HOM05D003539 ORTHO05D004111 2.4e-161 573.2 629 50.2
AT2G39240 Arabidopsis thaliana HOM05D003539 ORTHO05D004111 3.1e-161 572.8 603 57.2
THA.LOC104798595 Tarenaya hassleriana HOM05D003539 ORTHO05D004111 1.3e-159 567.4 538 56.1
vmacro18474 Vaccinium macrocarpon HOM05D003539 ORTHO05D004111 1.1e-158 564.3 640 50.3
Thecc.01G002200 Theobroma cacao HOM05D003539 ORTHO05D004111 2.5e-158 563.1 613 49.9
Glyma.16G112800 Glycine max HOM05D003539 ORTHO05D004111 6.1e-157 558.5 613 49.9
QL06p053198 Quercus lobata HOM05D003539 ORTHO05D004111 8.0e-157 558.1 593 51.8
Manes.01G157300 Manihot esculenta HOM05D003539 ORTHO05D004111 1.8e-156 557.0 621 51.7
Oeu063413.2 Olea europaea HOM05D003539 ORTHO05D004111 3.9e-156 555.8 625 51.0
Glyma.09G196200 Glycine max HOM05D003539 ORTHO05D004111 8.8e-156 554.7 625 48.6
Phvul.010G020100 Phaseolus vulgaris HOM05D003539 ORTHO05D004111 4.4e-155 552.4 613 49.3
CiPaw.15G173100 Carya illinoinensis HOM05D003539 ORTHO05D004111 1.7e-154 550.4 616 49.7
Oeu010807.1 Olea europaea HOM05D003539 ORTHO05D004111 3.7e-154 549.3 624 50.2
CANSAT35G0647 Cannabis sativa HOM05D003539 ORTHO05D004111 6.3e-154 548.5 613 49.8
Lsat_1_v5_gn_5_30740 Lactuca sativa HOM05D003539 ORTHO05D004111 3.1e-153 546.2 599 51.9
Sc06g0005250 Simmondsia chinensis HOM05D003539 ORTHO05D004111 3.1e-153 546.2 629 49.3
BcaC06g35972 Brassica carinata HOM05D003539 ORTHO05D004111 7.7e-152 541.6 580 55.5
Sed0003470 Sechium edule HOM05D003539 ORTHO05D004111 2.2e-151 540.0 620 47.6
Cfa007110 Carpinus fangiana HOM05D003539 ORTHO05D004111 2.9e-151 539.7 616 49.8
Haze_03640 Corylus avellana HOM05D003539 ORTHO05D004111 2.9e-151 539.7 616 49.5
Cc07_g12170 Coffea canephora HOM05D003539 ORTHO05D004111 1.1e-150 537.7 621 49.0
VMungo1309G1473 Vigna mungo HOM05D003539 ORTHO05D004111 4.2e-150 535.8 614 48.5
C07p01640 Brassica napus HOM05D003539 ORTHO05D004111 7.2e-150 535.0 566 56.0
ClCG02G000270 Citrullus lanatus HOM05D003539 ORTHO05D004111 8.0e-149 531.6 650 47.5
ECA233G1070 Erigeron canadensis HOM05D000002 ORTHO05D000001 8.0e-149 531.6 596 50.0
HanXRQChr16g0510861 Helianthus annuus HOM05D003539 ORTHO05D004111 1.0e-148 531.2 602 52.5
Lalb_Chr09g0334501 Lupinus albus HOM05D003539 ORTHO05D004111 3.0e-148 529.6 607 49.1
COL.COLO4_16224 Corchorus olitorius HOM05D003539 ORTHO05D004111 4.0e-148 529.3 583 49.9
TAR376G1176 Trochodendron aralioides HOM05D003539 ORTHO05D004111 6.7e-148 528.5 577 51.8
MSTRG.20424 Avicennia marina HOM05D003539 ORTHO05D004111 7.5e-147 525.0 623 47.7
Lalb_Chr05g0229501 Lupinus albus HOM05D003539 ORTHO05D004111 7.5e-147 525.0 604 48.3
EL10Ac4g09711 Beta vulgaris HOM05D003539 ORTHO05D004111 3.1e-145 519.6 616 46.4
Ca_21575_v3 Cicer arietinum L. HOM05D003539 ORTHO05D004111 3.5e-144 516.2 623 47.2
Lj4g0013403 Lotus japonicus HOM05D003539 ORTHO05D004111 7.7e-144 515.0 613 48.6
MD02G1108900 Malus domestica HOM05D003539 ORTHO05D004111 1.0e-143 514.6 614 48.4
arahy.Tifrunner.gnm1.ann1.VZS2MK Arachis hypogaea HOM05D003539 ORTHO05D004111 1.2e-141 507.7 716 41.5
Prupe.7G186400 Prunus persica HOM05D003539 ORTHO05D004111 2.1e-141 506.9 617 48.6
MELO3C006107.2 Cucumis melo HOM05D003539 ORTHO05D004111 3.6e-141 506.1 536 52.4
Rhsim08G0026200 Rhododendron simsii HOM05D003539 ORTHO05D004111 3.6e-141 506.1 647 46.8
Lj2C504G7 Lonicera japonica HOM05D003539 ORTHO05D004111 4.7e-141 505.8 524 51.9
AL4G36550 Arabidopsis lyrata HOM05D003539 ORTHO05D004111 1.0e-140 504.6 565 56.1
arahy.Tifrunner.gnm1.ann1.UQ0JCX Arachis hypogaea HOM05D003539 ORTHO05D004111 1.8e-140 503.8 710 41.5
arahy.Tifrunner.gnm1.ann1.PPI4NM Arachis hypogaea HOM05D003539 ORTHO05D004111 3.0e-140 503.1 688 42.4
CAN.G1428.5 Capsicum annuum HOM05D003539 ORTHO05D004111 1.2e-139 501.1 617 47.8
Manes.11G091200 Manihot esculenta HOM05D003539 ORTHO05D004111 1.2e-139 501.1 627 47.0
SGA_v2.0_scaffold36G14401 Striga asiatica HOM05D003539 ORTHO05D004111 1.5e-139 500.7 620 46.9
Potri.005G098500 Populus trichocarpa HOM05D003539 ORTHO05D004111 2.6e-139 500.0 618 48.2
SGA_v2.0_scaffold172G38971 Striga asiatica HOM05D003539 ORTHO05D004111 3.4e-139 499.6 678 45.3
Solyc02g082340.3 Solanum lycopersicum HOM05D003539 ORTHO05D004111 7.5e-139 498.4 601 47.1
Sopen02g027000 Solanum pennellii HOM05D003539 ORTHO05D004111 1.3e-138 497.7 602 46.8
arahy.Tifrunner.gnm1.ann1.4LH58N Arachis hypogaea HOM05D003539 ORTHO05D004111 2.2e-138 496.9 710 41.0
Sed0013779 Sechium edule HOM05D003539 ORTHO05D004111 4.8e-138 495.7 510 50.4
Hund21770 Selenicereus undatus HOM05D003539 ORTHO05D004111 1.4e-137 494.2 630 46.7
CsaV3_3G008890 Cucumis sativus L. HOM05D003539 ORTHO05D004111 1.8e-137 493.8 546 49.3
Nitab4.5_0000588g0180 Nicotiana tabacum HOM05D003539 ORTHO05D004111 2.4e-137 493.4 611 47.3
PSO017G0405 Papaver somniferum HOM05D003539 ORTHO05D004111 4.1e-137 492.7 610 46.1
Sabra05G0080900 Salix brachista HOM05D003539 ORTHO05D004111 1.6e-136 490.7 599 48.9
Nitab4.5_0000855g0080 Nicotiana tabacum HOM05D003539 ORTHO05D004111 2.7e-136 490.0 604 47.0
Migut.A00468 Erythranthe guttata HOM05D003539 ORTHO05D004111 5.9e-136 488.8 619 44.3
ClCG05G001500 Citrullus lanatus HOM05D003539 ORTHO05D004111 1.3e-135 487.6 649 43.8
Nitab4.5_0003096g0020 Nicotiana tabacum HOM05D003539 ORTHO05D004111 2.9e-135 486.5 584 47.6
Sc09g0001980 Simmondsia chinensis HOM05D003539 ORTHO05D004111 3.3e-134 483.0 513 52.0
Medtr4g117680 Medicago truncatula HOM05D003539 ORTHO05D004111 1.6e-133 480.7 619 46.0
MBI04_g31205_MAGBIO Magnolia biondii HOM05D003539 ORTHO05D004111 3.6e-133 479.6 609 44.8
PSO170G6051 Papaver somniferum HOM05D003539 ORTHO05D004111 8.0e-133 478.4 617 44.7
Psat3g044960 Pisum sativum HOM05D003539 ORTHO05D004111 8.0e-133 478.4 602 46.3
Aqoxy6G01535 Aquilegia oxysepala HOM05D003539 ORTHO05D004111 2.3e-132 476.9 632 44.8
TPR.G29658 Trifolium pratense HOM05D003539 ORTHO05D004111 3.0e-132 476.5 624 44.9
Actinidia28753 Actinidia chinensis HOM05D003539 ORTHO05D004111 1.5e-131 474.2 611 46.8
Psat7g042440 Pisum sativum HOM05D003539 ORTHO05D004111 1.5e-131 474.2 637 45.1
Duzib147G0916 Durio zibethinus HOM05D003539 ORTHO05D004111 4.9e-130 469.2 614 45.9
HanXRQChr09g0270331 Helianthus annuus HOM05D003539 ORTHO05D004111 4.9e-130 469.2 597 47.9
arahy.Tifrunner.gnm1.ann1.JIK3X3 Arachis hypogaea HOM05D003539 ORTHO05D004111 4.1e-129 466.1 698 39.5
AUR62006940 Chenopodium quinoa HOM05D003539 ORTHO05D004111 3.5e-128 463.0 598 44.6
Aqoxy3G00418 Aquilegia oxysepala HOM05D003539 ORTHO05D004111 1.3e-127 461.1 633 45.2
Aqoxy3G00897 Aquilegia oxysepala HOM05D003539 ORTHO05D004111 1.9e-126 457.2 578 46.4
Ah.06g188300 Amaranthus hybridus HOM05D003539 ORTHO05D004111 2.5e-126 456.8 612 43.8
Cfa016374 Carpinus fangiana HOM05D003539 ORTHO05D004111 3.3e-126 456.4 557 46.5
Haze_00123 Corylus avellana HOM05D003539 ORTHO05D004111 9.5e-126 454.9 594 45.6
Peaxi162Scf00677g00114 Petunia axillaris HOM05D003539 ORTHO05D004111 6.1e-125 452.2 615 44.2
Hund28202 Selenicereus undatus HOM05D003539 ORTHO05D004111 8.0e-125 451.8 602 43.9
Hund28214 Selenicereus undatus HOM05D003539 ORTHO05D004111 8.0e-125 451.8 602 43.9
Os06g0688100 Oryza sativa ssp. japonica HOM05D003539 ORTHO05D004111 3.0e-124 449.9 612 43.0
Gohir.A02G120000 Gossypium hirsutum HOM05D003539 ORTHO05D004111 1.2e-123 448.0 448 55.4
Peaxi162Scf00344g01722 Petunia axillaris HOM05D003539 ORTHO05D004111 4.9e-122 442.6 587 45.0
CDE07G0217 Ceratophyllum demersum HOM05D003539 ORTHO05D004111 6.4e-122 442.2 529 46.9
RcHm_v2.0_Chr2g0096801 Rosa chinensis HOM05D003539 ORTHO05D004111 1.7e-119 434.1 622 43.4
C07p01430 Brassica napus HOM05D003539 ORTHO05D004111 8.6e-119 431.8 429 58.5
Peaxi162Scf00015g00939 Petunia axillaris HOM05D003539 ORTHO05D004111 1.1e-118 431.4 613 45.0
FAN28G2151 Fragaria x ananassa HOM05D003539 ORTHO05D004111 4.3e-118 429.5 617 42.8
FvH4_1g10010 Fragaria vesca HOM05D003539 ORTHO05D004111 7.3e-118 428.7 617 42.9
AUR62000583 Chenopodium quinoa HOM05D003539 ORTHO05D004111 1.6e-117 427.6 595 42.0
FAN26G1725 Fragaria x ananassa HOM05D003539 ORTHO05D004111 1.6e-117 427.6 617 42.8
unitig_699.g19839 Utricularia gibba HOM05D003539 ORTHO05D004111 1.6e-117 427.6 586 43.0
FAN19G1026 Fragaria x ananassa HOM05D003539 ORTHO05D004111 2.0e-115 420.6 628 42.4
FAN23G2523 Fragaria x ananassa HOM05D003539 ORTHO05D004111 5.8e-115 419.1 636 41.7
BolC4t27866H Brassica oleracea HOM05D003539 ORTHO05D004111 9.8e-115 418.3 243 94.7
ATR0605G358 Amborella trichopoda HOM05D003539 ORTHO05D004111 6.0e-112 409.1 560 43.0
SEGI_33601 Sequoiadendron giganteum HOM05D003539 ORTHO05D004111 9.5e-110 401.7 606 39.9
Zm00001eb226160 Zea mays HOM05D003539 ORTHO05D004111 7.1e-105 385.6 582 41.1
Mapoly0144s0013 Marchantia polymorpha HOM05D003539 ORTHO05D004111 4.2e-89 333.2 567 37.9
Pp3c21_14490 Physcomitrium patens HOM05D003539 ORTHO05D004111 6.2e-85 319.3 527 37.4
Pp3c18_6750 Physcomitrium patens HOM05D003539 ORTHO05D004111 2.4e-84 317.4 576 34.2
Pp3c18_6751 Physcomitrium patens HOM05D003539 ORTHO05D004111 2.4e-84 317.4 576 34.2
SMO356G0429 Selaginella moellendorffii HOM05D003539 ORTHO05D004111 1.2e-80 305.1 547 34.2
BcaC06g35980 Brassica carinata HOM05D003539 ORTHO05D004111 3.1e-76 290.4 274 61.7
Actinidia20762 Actinidia chinensis HOM05D003539 ORTHO05D004111 4.0e-76 290.0 291 54.3
HPP92_018392 Vanilla planifolia HOM05D003539 ORTHO05D004111 1.9e-73 281.2 436 38.3
SalBow7G2073 Salvia bowleyana HOM05D003539 ORTHO05D004111 6.0e-72 276.2 351 44.2
Actinidia02872 Actinidia chinensis HOM05D003539 ORTHO05D004111 6.9e-68 262.7 307 47.2
AagrBONN_evm.TU.Sc2ySwM_368.2744 Anthoceros agrestis HOM05D003539 ORTHO05D004111 2.1e-64 251.1 538 32.5
SalBow7G0297 Salvia bowleyana HOM05D003539 ORTHO05D004111 2.8e-61 240.7 261 51.0
Actinidia20763 Actinidia chinensis HOM05D003539 ORTHO05D004111 6.3e-61 239.6 335 42.1
BcaB05g23816 Brassica carinata HOM05D003539 ORTHO05D004111 1.4e-60 238.4 316 47.2
DCAR_007550 Daucus carota HOM05D003539 ORTHO05D004111 1.1e-57 228.8 261 51.0
FAN23G0637 Fragaria x ananassa HOM05D003539 ORTHO05D004111 2.5e-57 227.6 349 41.5
SHI13961 Sapria himalayana HOM05D003539 ORTHO05D004111 6.5e-50 203.0 330 40.6
Oeu000297.1 Olea europaea HOM05D003539 ORTHO05D004111 3.2e-49 200.7 261 44.8
Cre03.g207950 Chlamydomonas reinhardtii HOM05D003539 ORTHO05D004111 3.7e-45 187.2 632 26.6
Ciclev10010838m.g Citrus clementina HOM05D003539 ORTHO05D004111 6.5e-42 176.4 188 49.5
C03p59690 Brassica napus HOM05D003539 ORTHO05D004111 1.4e-39 168.7 287 43.6
GSVIVG01026439001 Vitis vinifera HOM05D003539 ORTHO05D004111 1.3e-37 162.2 160 50.6
PSO782G3432 Papaver somniferum HOM05D003539 ORTHO05D004111 1.6e-35 155.2 291 35.1
BcaC06g35981 Brassica carinata HOM05D003539 ORTHO05D004111 3.3e-30 137.5 195 44.6
DCAR_007549 Daucus carota HOM05D003539 ORTHO05D004111 5.7e-30 136.7 180 45.0
Gohir.A02G119802 Gossypium hirsutum HOM05D003539 ORTHO05D004111 7.5e-30 136.3 155 47.7
PRCOL_00004831 Prasinoderma coloniale HOM05D003539 ORTHO05D004111 7.0e-28 129.8 549 24.8
arahy.Tifrunner.gnm1.ann1.PJLZ8M Arachis hypogaea HOM05D003539 ORTHO05D004111 8.5e-26 122.9 119 52.1
BolC3t18231H Brassica oleracea HOM05D003539 ORTHO05D004111 4.2e-25 120.6 74 74.3
MCO15G598 Micromonas commoda HOM05D003539 ORTHO05D004111 4.2e-25 120.6 641 23.7
CBR_g23271 Chara braunii HOM05D003539 ORTHO05D004111 1.4e-23 115.5 358 26.5
Cpa.g.sc7.212 Carica papaya HOM05D003539 ORTHO05D004111 4.0e-23 114.0 178 37.1
Cfa022324 Carpinus fangiana HOM05D003539 ORTHO05D004111 1.2e-22 112.5 580 22.9
CBR_g23267 Chara braunii HOM05D000019 ORTHO05D000048 3.4e-22 110.9 188 36.2
RcHm_v2.0_Chr2g0096841 Rosa chinensis HOM05D003539 ORTHO05D004111 7.5e-22 109.8 200 38.0
EL10Ac6g14558 Beta vulgaris HOM05D003539 ORTHO05D004111 2.4e-20 104.8 103 49.5
Cpa.g.sc7.213 Carica papaya HOM05D003539 ORTHO05D004111 3.1e-20 104.4 78 56.4
Cfa022001 Carpinus fangiana HOM05D003539 ORTHO05D004111 2.3e-18 98.2 132 45.5
C06p38600 Brassica napus HOM05D001833 ORTHO05D001776 2.6e-14 84.7 78 66.7
HanXRQChr05g0145981 Helianthus annuus HOM05D003539 ORTHO05D004111 1.4e-12 79.0 134 38.1
BcaC04g23416 Brassica carinata HOM05D003112 ORTHO05D003660 5.4e-12 77.0 41 92.7
C09p08570 Brassica napus HOM05D003112 ORTHO05D003660 5.4e-12 77.0 41 92.7
BolC9t53766H Brassica oleracea HOM05D003112 ORTHO05D003660 5.4e-12 77.0 41 92.7
BraA05t21411Z Brassica rapa HOM05D003539 ORTHO05D003660 5.0e-10 70.5 39 89.7
Aa31sc1240G10 Aethionema arabicum HOM05D003539 ORTHO05D004111 4.3e-09 67.4 47 70.2
BolC2t11972H Brassica oleracea HOM05D005837 ORTHO05D024186 4.7e-08 63.9 44 65.9
Medtr8g085920 Medicago truncatula HOM05D003539 ORTHO05D004111 5.2e-07 60.5 86 37.2


User provided reference genes

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