Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB06g28621 Brassica carinata HOM05D002665 ORTHO05D002991 1.9e-157 559.3 317 100.0
BraA03t15106Z Brassica rapa HOM05D002665 ORTHO05D002991 1.3e-36 157.9 161 64.0
C07p58550 Brassica napus HOM05D002665 ORTHO05D002991 2.8e-36 156.8 154 73.4
BolC7t46310H Brassica oleracea HOM05D002665 ORTHO05D002991 2.8e-36 156.8 154 73.4
Thhalv10025225m.g Eutrema salsugineum HOM05D002665 ORTHO05D002991 2.0e-34 150.6 164 63.4
BcaNung01529 Brassica carinata HOM05D002665 ORTHO05D002684 2.9e-33 146.7 159 69.8
C01p07700 Brassica napus HOM05D002665 ORTHO05D002991 1.1e-32 144.8 162 69.1
BolC1t00751H Brassica oleracea HOM05D002665 ORTHO05D002991 2.5e-32 143.7 162 63.0
A01p06970 Brassica napus HOM05D002665 ORTHO05D002991 5.5e-32 142.5 161 69.6
A03p60640 Brassica napus HOM05D002665 ORTHO05D002991 5.5e-32 142.5 170 58.8
BcaC09g51913 Brassica carinata HOM05D002665 ORTHO05D002991 1.2e-31 141.4 162 63.6
BraA01t00645Z Brassica rapa HOM05D002665 ORTHO05D002991 2.1e-31 140.6 161 64.6
Carub.0007s0922 Capsella rubella HOM05D002665 ORTHO05D002991 6.8e-30 135.6 164 64.0
BcaNung05320 Brassica carinata HOM05D002665 ORTHO05D002991 8.8e-30 135.2 174 59.8
Sp7g29200 Schrenkiella parvula HOM05D002665 ORTHO05D002991 3.2e-24 116.7 137 65.7
C07p05410 Brassica napus HOM05D000032 ORTHO05D004353 6.3e-20 102.4 113 59.3
BolC7t40941H Brassica oleracea HOM05D000032 ORTHO05D004353 6.3e-20 102.4 113 59.3
CARHR239220 Cardamine hirsuta HOM05D002665 ORTHO05D002991 6.3e-20 102.4 181 51.4
AL7G20740 Arabidopsis lyrata HOM05D002665 ORTHO05D002991 1.4e-19 101.3 132 62.9
Aa31LG2G19020 Aethionema arabicum HOM05D002665 ORTHO05D002991 4.1e-19 99.8 137 61.3
CARHR117640 Cardamine hirsuta HOM05D002665 ORTHO05D002991 2.0e-18 97.4 173 55.5
BcaC06g36321 Brassica carinata HOM05D000032 ORTHO05D004353 3.5e-18 96.7 114 57.0
Thhalv10000173m.g Eutrema salsugineum HOM05D002665 ORTHO05D002991 4.5e-18 96.3 138 50.7
BcaB06g27966 Brassica carinata HOM05D002665 ORTHO05D002991 5.9e-18 95.9 134 50.0
Sp4g03440 Schrenkiella parvula HOM05D002665 ORTHO05D002991 1.7e-17 94.4 138 63.8
AT4G31340 Arabidopsis thaliana HOM05D002665 ORTHO05D002991 2.3e-17 94.0 130 60.8
BcaB08g35344 Brassica carinata HOM05D000457 ORTHO05D000560 6.6e-17 92.4 53 96.2
BraA04t17483Z Brassica rapa HOM05D002665 ORTHO05D002991 2.5e-16 90.5 151 58.9
BcaC02g08462 Brassica carinata HOM05D002665 ORTHO05D002991 2.8e-15 87.0 126 67.5
BcaC02g08457 Brassica carinata HOM05D002665 ORTHO05D002991 3.6e-15 86.7 127 48.0
BolC4t26954H Brassica oleracea HOM05D002665 ORTHO05D002991 3.6e-15 86.7 127 48.0
Aa31LG7G11370 Aethionema arabicum HOM05D002665 ORTHO05D002991 1.8e-14 84.3 172 51.7
C04p43310 Brassica napus HOM05D002665 ORTHO05D040401 4.4e-13 79.7 88 60.2
BolC4t25911H Brassica oleracea HOM05D002665 ORTHO05D040401 4.4e-13 79.7 90 57.8
BcaB05g21734 Brassica carinata HOM05D000209 ORTHO05D032056 9.8e-13 78.6 35 94.3
BcaC01g04182 Brassica carinata HOM05D000209 ORTHO05D000129 6.4e-12 75.9 72 52.8
Thecc.09G004300 Theobroma cacao HOM05D002665 ORTHO05D002991 7.0e-11 72.4 144 45.1
Carub.0004s0377 Capsella rubella HOM05D002665 ORTHO05D002991 2.7e-10 70.5 161 46.0
Actinidia01290 Actinidia chinensis HOM05D002665 ORTHO05D002991 3.5e-10 70.1 172 34.3
AL4G14850 Arabidopsis lyrata HOM05D002665 ORTHO05D002991 4.6e-10 69.7 145 49.0
CsaV3_2G031150 Cucumis sativus L. HOM05D002665 ORTHO05D002991 5.9e-10 69.3 164 32.9
BcaC02g08459 Brassica carinata HOM05D002665 ORTHO05D002991 1.0e-09 68.6 170 48.8
Solyc07g008970.4 Solanum lycopersicum HOM05D002665 ORTHO05D002991 1.7e-09 67.8 154 32.5
BcaB04g18599 Brassica carinata HOM05D000209 ORTHO05D000129 3.0e-09 67.0 112 41.1
BcaB04g18600 Brassica carinata HOM05D000209 ORTHO05D000129 3.0e-09 67.0 112 41.1
A04p18730 Brassica napus HOM05D002665 ORTHO05D002991 3.0e-09 67.0 130 57.7
Gorai.009G069200 Gossypium raimondii HOM05D002665 ORTHO05D002991 1.9e-08 64.3 170 31.8
Duzib168G2001 Durio zibethinus HOM05D002665 ORTHO05D002991 2.5e-08 63.9 163 31.3
BcaB04g18597 Brassica carinata HOM05D000209 ORTHO05D000129 7.3e-08 62.4 113 40.7
BcaB04g18598 Brassica carinata HOM05D000209 ORTHO05D000129 7.3e-08 62.4 113 40.7
AT2G24420 Arabidopsis thaliana HOM05D002665 ORTHO05D002991 9.5e-08 62.0 140 50.7
BcaC01g04180 Brassica carinata HOM05D000209 ORTHO05D000129 9.5e-08 62.0 108 39.8
C03p44180 Brassica napus HOM05D000209 ORTHO05D000129 9.5e-08 62.0 108 39.8
BolC3t16691H Brassica oleracea HOM05D000209 ORTHO05D000129 9.5e-08 62.0 108 39.8
BcaB04g18601 Brassica carinata HOM05D000209 ORTHO05D000129 1.2e-07 61.6 113 39.8
Aa31LG5G14890 Aethionema arabicum HOM05D004899 ORTHO05D006580 1.6e-07 61.2 33 81.8
A03p36550 Brassica napus HOM05D000209 ORTHO05D000129 1.6e-07 61.2 105 38.1
BraA03t12823Z Brassica rapa HOM05D000209 ORTHO05D000129 1.6e-07 61.2 107 40.2
PGSC0003DMG400028754 Solanum tuberosum HOM05D002665 ORTHO05D002991 1.6e-07 61.2 150 34.7
PSO170G0184 Papaver somniferum HOM05D002665 ORTHO05D002991 2.1e-07 60.8 174 28.2
A03p36560 Brassica napus HOM05D000209 ORTHO05D000129 4.7e-07 59.7 107 39.3
PSO144G0166 Papaver somniferum HOM05D002665 ORTHO05D002991 8.0e-07 58.9 174 27.6
BcaB04g19333 Brassica carinata HOM05D004899 ORTHO05D006580 1.1e-06 58.5 30 86.7
CARHR078590 Cardamine hirsuta HOM05D004899 ORTHO05D006580 1.1e-06 58.5 30 86.7
Dinv26437 Davidia involucrata HOM05D002665 ORTHO05D002991 1.1e-06 58.5 145 34.5
C03p44200 Brassica napus HOM05D000209 ORTHO05D032056 1.4e-06 58.2 37 73.0
BolC3t16692H Brassica oleracea HOM05D000209 ORTHO05D032056 1.4e-06 58.2 37 73.0
Thecc.09G183600 Theobroma cacao HOM05D002665 ORTHO05D002991 1.4e-06 58.2 146 28.1
CSS0011343 Camellia sinensis var. sinensis HOM05D002665 ORTHO05D002991 1.8e-06 57.8 139 44.6
CSS0018914 Camellia sinensis var. sinensis HOM05D002665 ORTHO05D002991 1.8e-06 57.8 139 45.3
Thhalv10020878m.g Eutrema salsugineum HOM05D004899 ORTHO05D006580 2.3e-06 57.4 30 83.3
Carub.0003s0362 Capsella rubella HOM05D004899 ORTHO05D006580 3.1e-06 57.0 30 83.3
Nitab4.5_0004459g0010 Nicotiana tabacum HOM05D002665 ORTHO05D002991 3.1e-06 57.0 146 32.2
AL3G14410 Arabidopsis lyrata HOM05D004899 ORTHO05D006580 4.0e-06 56.6 30 83.3
AT3G04460 Arabidopsis thaliana HOM05D004899 ORTHO05D006580 4.0e-06 56.6 30 83.3
A05p43040 Brassica napus HOM05D004899 ORTHO05D006580 4.0e-06 56.6 30 83.3
A09p56320 Brassica napus HOM05D002665 ORTHO05D002991 4.0e-06 56.6 130 53.8
C04p54020 Brassica napus HOM05D002665 ORTHO05D002991 4.0e-06 56.6 131 53.4
BraA09t41027Z Brassica rapa HOM05D002665 ORTHO05D002991 4.0e-06 56.6 130 53.8
Nitab4.5_0001392g0090 Nicotiana tabacum HOM05D002665 ORTHO05D002991 4.0e-06 56.6 151 31.1
A03p33610 Brassica napus HOM05D004899 ORTHO05D006580 5.2e-06 56.2 30 83.3
BraA03t12536Z Brassica rapa HOM05D004899 ORTHO05D006580 5.2e-06 56.2 30 83.3
Gohir.A05G065951 Gossypium hirsutum HOM05D002665 ORTHO05D002991 5.2e-06 56.2 170 36.5
Oeu002014.1 Olea europaea HOM05D002665 ORTHO05D002991 5.2e-06 56.2 154 38.3
SalBow8G3867 Salvia bowleyana HOM05D002665 ORTHO05D002991 5.2e-06 56.2 119 34.5
Sp3g03310 Schrenkiella parvula HOM05D004899 ORTHO05D006580 5.2e-06 56.2 30 83.3
ATR0626G381 Amborella trichopoda HOM05D002665 ORTHO05D002991 6.8e-06 55.8 151 29.8
A03p36540 Brassica napus HOM05D000209 ORTHO05D000129 6.8e-06 55.8 108 38.9
A05p00430 Brassica napus HOM05D000209 ORTHO05D000129 6.8e-06 55.8 104 37.5
C03p44150 Brassica napus HOM05D000209 ORTHO05D000129 6.8e-06 55.8 107 34.6
BolC3t16690H Brassica oleracea HOM05D000209 ORTHO05D000129 6.8e-06 55.8 107 34.6
BraA05t19041Z Brassica rapa HOM05D000209 ORTHO05D000129 6.8e-06 55.8 104 37.5
CDE02G3722 Ceratophyllum demersum HOM05D003490 ORTHO05D004835 8.9e-06 55.5 155 29.0
unitig_747.g21906 Utricularia gibba HOM05D002665 ORTHO05D002991 8.9e-06 55.5 167 31.7


User provided reference genes

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