Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB06g28460 Brassica carinata HOM05D011688 ORTHO05D021812 6.5e-51 203.8 102 100.0
BolC4t22708H Brassica oleracea HOM05D011688 ORTHO05D021812 3.9e-48 194.5 102 96.1
BolC4t22733H Brassica oleracea HOM05D011688 ORTHO05D021812 5.3e-45 184.1 105 92.4
C03p17260 Brassica napus HOM05D011688 ORTHO05D021812 1.0e-43 179.9 93 96.8
BolC4t27506H Brassica oleracea HOM05D011688 ORTHO05D016088 1.3e-27 126.3 65 96.9
C04p60030 Brassica napus HOM05D011688 ORTHO05D016088 1.7e-27 125.9 64 98.4
C09p10010 Brassica napus HOM05D011688 ORTHO05D016088 1.7e-27 125.9 64 98.4
BolC8t50660H Brassica oleracea HOM05D011688 ORTHO05D016088 6.5e-27 124.0 65 95.4
C04p42180 Brassica napus HOM05D011688 ORTHO05D016088 8.6e-27 123.6 63 96.8
BolC1t03266H Brassica oleracea HOM05D011688 ORTHO05D016088 8.6e-27 123.6 65 95.4
C09p16910 Brassica napus HOM05D000274 ORTHO05D021812 1.5e-26 122.9 63 95.2
BcaC04g22665 Brassica carinata HOM05D000274 ORTHO05D006767 4.7e-25 117.9 63 95.2
C02p49280 Brassica napus HOM05D011688 ORTHO05D016088 4.0e-24 114.8 79 78.5
BolC9t54588H Brassica oleracea HOM05D000274 ORTHO05D006767 8.9e-24 113.6 76 78.9
Aa31LG1G2210 Aethionema arabicum HOM05D000274 ORTHO05D006767 1.9e-18 95.9 97 57.7
BcaC05g25194 Brassica carinata HOM05D000274 ORTHO05D006767 1.9e-18 95.9 97 58.8
Thhalv10008424m.g Eutrema salsugineum HOM05D000274 ORTHO05D006767 1.9e-18 95.9 97 58.8
Sp1g11010 Schrenkiella parvula HOM05D000274 ORTHO05D006767 2.5e-18 95.5 97 58.8
C05p10790 Brassica napus HOM05D000274 ORTHO05D006767 5.6e-18 94.4 97 57.7
BolC5t29821H Brassica oleracea HOM05D000274 ORTHO05D006767 5.6e-18 94.4 97 57.7
AL1G23740 Arabidopsis lyrata HOM05D000274 ORTHO05D006767 3.6e-17 91.7 97 55.7
AT1G12410 Arabidopsis thaliana HOM05D000274 ORTHO05D006767 3.6e-17 91.7 97 55.7
BcaC07g41702 Brassica carinata HOM05D000274 ORTHO05D006767 8.0e-17 90.5 97 56.7
A06p09220 Brassica napus HOM05D000274 ORTHO05D006767 8.0e-17 90.5 97 56.7
C08p47410 Brassica napus HOM05D000274 ORTHO05D006767 8.0e-17 90.5 97 56.7
BolC8t52281H Brassica oleracea HOM05D000274 ORTHO05D006767 8.0e-17 90.5 97 56.7
BraA06t24108Z Brassica rapa HOM05D000274 ORTHO05D006767 8.0e-17 90.5 97 56.7
BraA09t41734Z Brassica rapa HOM05D000274 ORTHO05D006767 8.0e-17 90.5 97 56.7
Carub.0001s1206 Capsella rubella HOM05D000274 ORTHO05D006767 1.0e-16 90.1 97 55.7
CARHR012700 Cardamine hirsuta HOM05D000274 ORTHO05D006767 1.0e-16 90.1 97 54.6
BraA07t27925Z Brassica rapa HOM05D000274 ORTHO05D006767 5.2e-16 87.8 71 69.0
Oeu025551.1 Olea europaea HOM05D000274 ORTHO05D006767 5.8e-15 84.3 97 52.6
PGR004G1395 Punica granatum HOM05D000274 ORTHO05D006767 7.5e-15 84.0 95 51.6
BcaC04g23296 Brassica carinata HOM05D011688 ORTHO05D016088 9.8e-15 83.6 43 93.0
Nitab4.5_0000439g0150 Nicotiana tabacum HOM05D000274 ORTHO05D006767 9.8e-15 83.6 97 51.5
Nitab4.5_0005241g0020 Nicotiana tabacum HOM05D000274 ORTHO05D006767 9.8e-15 83.6 97 51.5
Peaxi162Scf00271g00031 Petunia axillaris HOM05D000274 ORTHO05D006767 9.8e-15 83.6 97 52.6
EL10Ac5g12635 Beta vulgaris HOM05D000274 ORTHO05D006767 2.2e-14 82.4 94 52.1
THA.LOC104818350 Tarenaya hassleriana HOM05D000274 ORTHO05D006767 2.9e-14 82.0 97 50.5
Ah.12g058120 Amaranthus hybridus HOM05D000274 ORTHO05D006767 3.7e-14 81.6 97 50.5
Cpa.g.sc29.73 Carica papaya HOM05D000274 ORTHO05D006767 3.7e-14 81.6 97 50.5
CiPaw.12G103600 Carya illinoinensis HOM05D000274 ORTHO05D006767 3.7e-14 81.6 96 52.1
Lsat_1_v5_gn_3_3401 Lactuca sativa HOM05D000274 ORTHO05D006767 3.7e-14 81.6 95 50.5
SalBow6G2249 Salvia bowleyana HOM05D000274 ORTHO05D006767 3.7e-14 81.6 97 49.5
MSTRG.1931 Avicennia marina HOM05D000274 ORTHO05D006767 4.9e-14 81.3 97 50.5
CANSAT21G0895 Cannabis sativa HOM05D000274 ORTHO05D006767 4.9e-14 81.3 95 51.6
AUR62010522 Chenopodium quinoa HOM05D000274 ORTHO05D006767 4.9e-14 81.3 97 49.5
AUR62017375 Chenopodium quinoa HOM05D000274 ORTHO05D006767 4.9e-14 81.3 97 49.5
Migut.A00848 Erythranthe guttata HOM05D000274 ORTHO05D006767 4.9e-14 81.3 114 48.2
Lj4g0011320 Lotus japonicus HOM05D000274 ORTHO05D006767 4.9e-14 81.3 96 51.0
Thecc.03G263300 Theobroma cacao HOM05D000274 ORTHO05D006767 4.9e-14 81.3 95 51.6
Gohir.A12G222000 Gossypium hirsutum HOM05D000274 ORTHO05D006767 6.4e-14 80.9 95 50.5
Gohir.D12G224500 Gossypium hirsutum HOM05D000274 ORTHO05D006767 6.4e-14 80.9 95 50.5
Gorai.008G240600 Gossypium raimondii HOM05D000274 ORTHO05D006767 6.4e-14 80.9 95 50.5
MD04G1077600 Malus domestica HOM05D000274 ORTHO05D006767 6.4e-14 80.9 95 51.6
MD06G1063900 Malus domestica HOM05D000274 ORTHO05D006767 6.4e-14 80.9 95 51.6
PSO063G2753 Papaver somniferum HOM05D000274 ORTHO05D006767 6.4e-14 80.9 92 52.2
PSO782G2278 Papaver somniferum HOM05D000274 ORTHO05D006767 6.4e-14 80.9 92 52.2
CSS0003342 Camellia sinensis var. sinensis HOM05D000274 ORTHO05D006767 8.3e-14 80.5 95 50.5
CAN.G630.55 Capsicum annuum HOM05D000274 ORTHO05D006767 8.3e-14 80.5 97 49.5
Cc08_g13400 Coffea canephora HOM05D000274 ORTHO05D006767 8.3e-14 80.5 92 53.3
Lalb_Chr05g0225301 Lupinus albus HOM05D000274 ORTHO05D006767 8.3e-14 80.5 95 51.6
RcHm_v2.0_Chr7g0201061 Rosa chinensis HOM05D000274 ORTHO05D006767 8.3e-14 80.5 95 50.5
Cfa012030 Carpinus fangiana HOM05D000274 ORTHO05D006767 1.4e-13 79.7 95 51.6
ECA246G0641 Erigeron canadensis HOM05D000274 ORTHO05D006767 1.4e-13 79.7 92 51.1
HanXRQChr06g0164721 Helianthus annuus HOM05D000274 ORTHO05D006767 1.4e-13 79.7 92 51.1
QL12p015358 Quercus lobata HOM05D000274 ORTHO05D006767 1.4e-13 79.7 95 51.6
Sc01g0009140 Simmondsia chinensis HOM05D000274 ORTHO05D006767 1.4e-13 79.7 97 50.5
CDE08G0290 Ceratophyllum demersum HOM05D000274 ORTHO05D006767 1.8e-13 79.3 92 50.0
HanXRQChr17g0550501 Helianthus annuus HOM05D000274 ORTHO05D006767 1.8e-13 79.3 92 50.0
Prupe.5G081300 Prunus persica HOM05D000274 ORTHO05D006767 1.8e-13 79.3 95 50.5
FvH4_5g00850 Fragaria vesca HOM05D000274 ORTHO05D006767 2.4e-13 79.0 95 49.5
FAN04G3158 Fragaria x ananassa HOM05D000274 ORTHO05D006767 2.4e-13 79.0 95 49.5
FAN08G2422 Fragaria x ananassa HOM05D000274 ORTHO05D006767 2.4e-13 79.0 95 49.5
FAN18G2275 Fragaria x ananassa HOM05D000274 ORTHO05D006767 2.4e-13 79.0 95 49.5
CSS0013233 Camellia sinensis var. sinensis HOM05D000274 ORTHO05D006767 5.4e-13 77.8 95 50.5
TWI81G0936 Tripterygium wilfordii HOM05D000274 ORTHO05D006767 5.4e-13 77.8 95 49.5
arahy.Tifrunner.gnm1.ann1.6KUP6V Arachis hypogaea HOM05D000274 ORTHO05D006767 9.2e-13 77.0 101 45.5
C06p36460 Brassica napus HOM05D011688 ORTHO05D103822 9.2e-13 77.0 69 62.3
A07p01340 Brassica napus HOM05D000274 ORTHO05D021812 1.2e-12 76.6 96 51.0
HanXRQChr10g0284571 Helianthus annuus HOM05D000555 ORTHO05D000646 1.2e-12 76.6 92 48.9
Phvul.003G215800 Phaseolus vulgaris HOM05D000274 ORTHO05D006767 1.2e-12 76.6 95 49.5
VMungo0251G1701 Vigna mungo HOM05D000274 ORTHO05D006767 1.2e-12 76.6 95 49.5
Atru.chr9.1459 Acer truncatum HOM05D000274 ORTHO05D006767 1.6e-12 76.3 92 51.1
MELO3C005589.2 Cucumis melo HOM05D000274 ORTHO05D006767 1.6e-12 76.3 95 49.5
MBI04_g35280_MAGBIO Magnolia biondii HOM05D000274 ORTHO05D006767 1.6e-12 76.3 97 47.4
arahy.Tifrunner.gnm1.ann1.U20N0A Arachis hypogaea HOM05D000274 ORTHO05D006767 2.7e-12 75.5 92 48.9
Gohir.A08G174700 Gossypium hirsutum HOM05D000274 ORTHO05D006767 2.7e-12 75.5 95 48.4
TAR375G0199 Trochodendron aralioides HOM05D000274 ORTHO05D006767 2.7e-12 75.5 92 50.0
unitig_52.g17499 Utricularia gibba HOM05D000274 ORTHO05D006767 2.7e-12 75.5 92 51.1
Ciclev10021577m.g Citrus clementina HOM05D000274 ORTHO05D006767 3.5e-12 75.1 95 48.4
ATR0810G160 Amborella trichopoda HOM05D000274 ORTHO05D006767 4.6e-12 74.7 96 46.9
DCAR_008450 Daucus carota HOM05D000274 ORTHO05D006767 1.0e-11 73.6 91 49.5
CSS0046106 Camellia sinensis var. sinensis HOM05D000274 ORTHO05D006767 1.3e-11 73.2 95 48.4
TAR626G1468 Trochodendron aralioides HOM05D000274 ORTHO05D006767 1.7e-11 72.8 92 48.9
Glyma.17G136100 Glycine max HOM05D000274 ORTHO05D006767 3.0e-11 72.0 92 48.9
arahy.Tifrunner.gnm1.ann1.6QW8CL Arachis hypogaea HOM05D000274 ORTHO05D006767 5.0e-11 71.2 92 46.7
Sopen08g027970 Solanum pennellii HOM05D000274 ORTHO05D006767 8.6e-11 70.5 97 46.4
PGSC0003DMG400003952 Solanum tuberosum HOM05D000274 ORTHO05D006767 1.1e-10 70.1 97 46.4
Potri.001G115900 Populus trichocarpa HOM05D000274 ORTHO05D006767 1.9e-10 69.3 90 47.8
Sabra01G0089000 Salix brachista HOM05D000274 ORTHO05D006767 1.9e-10 69.3 90 47.8
Solyc08g079620.3 Solanum lycopersicum HOM05D000274 ORTHO05D006767 1.9e-10 69.3 97 45.4
Ca_12287_v3 Cicer arietinum L. HOM05D000274 ORTHO05D006767 3.3e-10 68.6 95 45.3
CsaV3_5G003660 Cucumis sativus L. HOM05D000274 ORTHO05D006767 5.6e-10 67.8 96 44.8
Manes.01G071900 Manihot esculenta HOM05D000274 ORTHO05D006767 5.6e-10 67.8 93 47.3
Mapoly0213s0011 Marchantia polymorpha HOM05D000274 ORTHO05D006767 9.5e-10 67.0 91 46.2
Pp3c12_2930 Physcomitrium patens HOM05D000274 ORTHO05D006767 1.2e-09 66.6 95 42.1
A09p63870 Brassica napus HOM05D000274 ORTHO05D006767 1.6e-09 66.2 78 51.3
CBR_g23029 Chara braunii HOM05D000274 ORTHO05D006767 1.6e-09 66.2 92 45.7
Pp3c3_12310 Physcomitrium patens HOM05D000274 ORTHO05D006767 1.6e-09 66.2 95 42.1
AagrBONN_evm.TU.Sc2ySwM_117.489 Anthoceros agrestis HOM05D000274 ORTHO05D006767 2.1e-09 65.9 91 45.1
Duzib084G0200 Durio zibethinus HOM05D000274 ORTHO05D006767 2.1e-09 65.9 89 46.1
arahy.Tifrunner.gnm1.ann1.LKJZ2T Arachis hypogaea HOM05D000274 ORTHO05D006767 2.8e-09 65.5 91 45.1
COL.COLO4_23852 Corchorus olitorius HOM05D000274 ORTHO05D006767 2.8e-09 65.5 95 45.3
Medtr4g102000 Medicago truncatula HOM05D000274 ORTHO05D006767 2.8e-09 65.5 95 43.2
CBR_g8944 Chara braunii HOM05D000274 ORTHO05D006767 8.0e-09 63.9 92 43.5
SMO134G0269 Selaginella moellendorffii HOM05D000274 ORTHO05D006767 8.9e-08 60.5 96 38.5
Lj2A206T34 Lonicera japonica HOM05D000274 ORTHO05D006767 1.5e-07 59.7 92 39.1
Os06g0136800 Oryza sativa ssp. japonica HOM05D000274 ORTHO05D006767 1.5e-07 59.7 90 42.2
Eucgr.E00484 Eucalyptus grandis HOM05D000274 ORTHO05D006767 3.4e-07 58.5 37 75.7
HanXRQChr15g0489441 Helianthus annuus HOM05D000274 ORTHO05D006767 5.8e-07 57.8 84 44.0
Glyma.05G053600 Glycine max HOM05D000274 ORTHO05D006767 7.5e-07 57.4 36 77.8
ClCG01G003570 Citrullus lanatus HOM05D000274 ORTHO05D006767 9.8e-07 57.0 39 71.8
Sed0011540 Sechium edule HOM05D000274 ORTHO05D006767 9.8e-07 57.0 39 66.7
Duzib068G0042 Durio zibethinus HOM05D000274 ORTHO05D006767 1.3e-06 56.6 89 40.4
GSVIVG01019939001 Vitis vinifera HOM05D000274 ORTHO05D006767 2.9e-06 55.5 39 66.7
SMO118G0264 Selaginella moellendorffii HOM05D000274 ORTHO05D006767 4.9e-06 54.7 86 40.7


User provided reference genes

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