Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB06g28175 Brassica carinata HOM05D004020 ORTHO05D004735 0.0e+00 2056.2 1068 100.0
A04p21190 Brassica napus HOM05D004020 ORTHO05D004735 0.0e+00 1877.8 1081 91.8
BraA04t17688Z Brassica rapa HOM05D004020 ORTHO05D004735 0.0e+00 1862.4 1083 91.2
C04p57020 Brassica napus HOM05D004020 ORTHO05D004735 0.0e+00 1854.0 1083 90.9
BolC4t27237H Brassica oleracea HOM05D004020 ORTHO05D004735 0.0e+00 1832.4 1084 90.0
BcaC02g08224 Brassica carinata HOM05D004020 ORTHO05D004735 0.0e+00 1827.0 1086 89.8
Sp4g10720 Schrenkiella parvula HOM05D004020 ORTHO05D004735 0.0e+00 1764.2 1077 86.7
BcaB01g03084 Brassica carinata HOM05D004020 ORTHO05D004735 0.0e+00 1760.0 1077 86.8
AT2G27900 Arabidopsis thaliana HOM05D004020 ORTHO05D004735 0.0e+00 1756.9 1072 86.2
Carub.0004s0864 Capsella rubella HOM05D004020 ORTHO05D004735 0.0e+00 1751.9 1077 86.3
A03p26460 Brassica napus HOM05D004020 ORTHO05D004735 0.0e+00 1749.6 1079 86.9
AL4G22350 Arabidopsis lyrata HOM05D004020 ORTHO05D004735 0.0e+00 1741.1 1072 86.0
BcaC01g04955 Brassica carinata HOM05D004020 ORTHO05D004735 0.0e+00 1736.5 1078 86.1
Thhalv10016162m.g Eutrema salsugineum HOM05D004020 ORTHO05D004735 0.0e+00 1736.1 1080 85.5
C03p31750 Brassica napus HOM05D004020 ORTHO05D004735 0.0e+00 1727.6 1080 86.1
BolC3t15517H Brassica oleracea HOM05D004020 ORTHO05D004735 0.0e+00 1725.7 1084 85.6
Aa31LG5G8160 Aethionema arabicum HOM05D004020 ORTHO05D004735 0.0e+00 1699.1 1074 83.6
THA.LOC104826398 Tarenaya hassleriana HOM05D004020 ORTHO05D004735 0.0e+00 1544.3 1074 77.4
CARHR120590 Cardamine hirsuta HOM05D004020 ORTHO05D004735 0.0e+00 1529.2 937 85.1
THA.LOC104800567 Tarenaya hassleriana HOM05D004020 ORTHO05D004735 0.0e+00 1505.3 1078 75.0
Thecc.09G295800 Theobroma cacao HOM05D004020 ORTHO05D004735 0.0e+00 1316.2 1070 66.5
Manes.11G154000 Manihot esculenta HOM05D004020 ORTHO05D004735 0.0e+00 1315.8 1086 65.2
Sabra04G0148500 Salix brachista HOM05D004020 ORTHO05D004735 0.0e+00 1310.8 1078 65.8
Cfa010130 Carpinus fangiana HOM05D004020 ORTHO05D004735 0.0e+00 1306.2 1089 64.9
Glyma.11G191100 Glycine max HOM05D004020 ORTHO05D004735 0.0e+00 1303.9 1077 66.0
Atru.chr3.3492 Acer truncatum HOM05D004020 ORTHO05D004735 0.0e+00 1303.5 1112 64.8
CiPaw.14G105600 Carya illinoinensis HOM05D004020 ORTHO05D004735 0.0e+00 1300.0 1085 64.6
Glyma.12G083200 Glycine max HOM05D004020 ORTHO05D004735 0.0e+00 1298.5 1087 65.1
CSS0033419 Camellia sinensis var. sinensis HOM05D004020 ORTHO05D004735 0.0e+00 1297.3 1096 63.9
Lj3g0000902 Lotus japonicus HOM05D004020 ORTHO05D004735 0.0e+00 1296.6 1086 64.6
TAR633G0695 Trochodendron aralioides HOM05D004020 ORTHO05D004735 0.0e+00 1295.4 1094 63.6
Medtr4g056510 Medicago truncatula HOM05D004020 ORTHO05D004735 0.0e+00 1294.3 1082 65.2
Potri.009G002900 Populus trichocarpa HOM05D004020 ORTHO05D004735 0.0e+00 1290.4 1069 64.9
TWI75G0197 Tripterygium wilfordii HOM05D004020 ORTHO05D004735 0.0e+00 1290.0 1090 64.5
Gorai.009G089000 Gossypium raimondii HOM05D004020 ORTHO05D004735 0.0e+00 1286.9 1071 65.5
Ciclev10027713m.g Citrus clementina HOM05D004020 ORTHO05D004735 0.0e+00 1286.6 1086 65.0
Potri.001G212600 Populus trichocarpa HOM05D004020 ORTHO05D004735 0.0e+00 1286.6 1071 64.9
Lalb_Chr19g0136831 Lupinus albus HOM05D004020 ORTHO05D004735 0.0e+00 1282.3 1084 64.6
Ca_19329_v3 Cicer arietinum L. HOM05D004020 ORTHO05D004735 0.0e+00 1281.9 1079 64.5
Psat7g191400 Pisum sativum HOM05D004020 ORTHO05D004735 0.0e+00 1279.6 1078 64.5
FvH4_3g30380 Fragaria vesca HOM05D004020 ORTHO05D004735 0.0e+00 1279.2 1082 64.8
RcHm_v2.0_Chr5g0056331 Rosa chinensis HOM05D004020 ORTHO05D004735 0.0e+00 1278.5 1083 64.4
TPR.G35043 Trifolium pratense HOM05D004020 ORTHO05D004735 0.0e+00 1274.2 1079 64.1
MD11G1151500 Malus domestica HOM05D004020 ORTHO05D004735 0.0e+00 1273.8 1083 64.0
FAN21G0469 Fragaria x ananassa HOM05D004020 ORTHO05D004735 0.0e+00 1272.7 1085 64.3
Actinidia07194 Actinidia chinensis HOM05D004020 ORTHO05D004735 0.0e+00 1268.4 1086 63.1
Duzib168G0446 Durio zibethinus HOM05D004020 ORTHO05D004735 0.0e+00 1266.1 1069 64.5
Lalb_Chr01g0004661 Lupinus albus HOM05D004020 ORTHO05D004735 0.0e+00 1264.6 1086 63.4
Rhsim13G0102300 Rhododendron simsii HOM05D004020 ORTHO05D004735 0.0e+00 1264.2 1112 61.9
MD03G1129700 Malus domestica HOM05D004020 ORTHO05D004735 0.0e+00 1263.1 1085 64.3
COL.COLO4_19229 Corchorus olitorius HOM05D004020 ORTHO05D004735 0.0e+00 1258.4 1071 63.8
Actinidia24157 Actinidia chinensis HOM05D004020 ORTHO05D004735 0.0e+00 1256.9 1083 62.6
Gohir.D05G087200 Gossypium hirsutum HOM05D004020 ORTHO05D004735 0.0e+00 1255.7 1071 64.1
FAN11G1674 Fragaria x ananassa HOM05D004020 ORTHO05D004735 0.0e+00 1255.0 1105 63.3
Gohir.D07G110000 Gossypium hirsutum HOM05D004020 ORTHO05D004735 0.0e+00 1253.4 1079 63.9
Prupe.6G114700 Prunus persica HOM05D004020 ORTHO05D004735 0.0e+00 1250.0 1087 63.1
CsaV3_1G014440 Cucumis sativus L. HOM05D004020 ORTHO05D004735 0.0e+00 1249.2 1068 63.0
MELO3C004814.2 Cucumis melo HOM05D004020 ORTHO05D004735 0.0e+00 1246.9 1068 62.5
Sed0021294 Sechium edule HOM05D004020 ORTHO05D004735 0.0e+00 1245.0 1068 62.7
Gohir.A05G084400 Gossypium hirsutum HOM05D004020 ORTHO05D004735 0.0e+00 1244.6 1083 63.2
Nn2g13902 Nelumbo nucifera HOM05D004020 ORTHO05D004735 0.0e+00 1243.0 1089 62.3
Phvul.011G088000 Phaseolus vulgaris HOM05D004020 ORTHO05D004735 0.0e+00 1239.2 1082 63.3
Duzib150G0506 Durio zibethinus HOM05D004020 ORTHO05D004735 0.0e+00 1220.7 1072 63.4
GSVIVG01031444001 Vitis vinifera HOM05D004020 ORTHO05D004735 0.0e+00 1218.4 1069 62.7
Aqoxy2G01562 Aquilegia oxysepala HOM05D004020 ORTHO05D004735 0.0e+00 1207.2 1095 60.5
Sopen11g026290 Solanum pennellii HOM05D004020 ORTHO05D004735 0.0e+00 1204.1 1070 60.7
CAN.G644.49 Capsicum annuum HOM05D004020 ORTHO05D004735 0.0e+00 1203.0 1071 61.2
PGR102G0426 Punica granatum HOM05D004020 ORTHO05D004735 0.0e+00 1200.3 1067 61.9
Nitab4.5_0000173g0340 Nicotiana tabacum HOM05D004020 ORTHO05D004735 0.0e+00 1192.6 1110 59.2
vmacro03245 Vaccinium macrocarpon HOM05D004020 ORTHO05D004735 0.0e+00 1192.2 1122 58.9
PSO801G0568 Papaver somniferum HOM05D004020 ORTHO05D004735 0.0e+00 1191.0 1093 60.2
PSO339G0247 Papaver somniferum HOM05D004020 ORTHO05D004735 0.0e+00 1189.1 1093 60.4
Cc01_g10110 Coffea canephora HOM05D004020 ORTHO05D004735 0.0e+00 1186.8 1097 59.5
Sc06g0008980 Simmondsia chinensis HOM05D004020 ORTHO05D004735 0.0e+00 1179.1 1053 61.7
HanXRQChr14g0451831 Helianthus annuus HOM05D004020 ORTHO05D004735 0.0e+00 1174.5 1075 59.7
arahy.Tifrunner.gnm1.ann1.MMVL4X Arachis hypogaea HOM05D004020 ORTHO05D004735 0.0e+00 1171.0 1090 59.6
MSTRG.18711 Avicennia marina HOM05D004020 ORTHO05D004735 0.0e+00 1164.4 1084 59.6
arahy.Tifrunner.gnm1.ann1.533Y7U Arachis hypogaea HOM05D004020 ORTHO05D004735 0.0e+00 1164.1 1099 58.9
Migut.D02305 Erythranthe guttata HOM05D004020 ORTHO05D004735 0.0e+00 1158.3 1088 60.2
EL10Ac9g20998 Beta vulgaris HOM05D004020 ORTHO05D004735 0.0e+00 1156.4 1128 57.7
ECA238G2607 Erigeron canadensis HOM05D004020 ORTHO05D004735 0.0e+00 1153.3 1076 58.6
Lsat_1_v5_gn_6_42101 Lactuca sativa HOM05D004020 ORTHO05D004735 0.0e+00 1138.6 1081 57.1
CDE08G1223 Ceratophyllum demersum HOM05D004020 ORTHO05D004735 0.0e+00 1133.2 1082 58.8
BraA03t11860Z Brassica rapa HOM05D004020 ORTHO05D004735 0.0e+00 1118.6 728 84.6
HanXRQChr02g0055251 Helianthus annuus HOM05D004020 ORTHO05D004735 0.0e+00 1113.6 1092 56.5
arahy.Tifrunner.gnm1.ann1.B084HG Arachis hypogaea HOM05D004020 ORTHO05D004735 0.0e+00 1112.8 932 64.2
arahy.Tifrunner.gnm1.ann1.PN7A9Z Arachis hypogaea HOM05D004020 ORTHO05D004735 0.0e+00 1110.5 931 64.0
AL4G12830 Arabidopsis lyrata HOM05D004020 ORTHO05D004735 0.0e+00 1109.4 884 72.5
ATR1158G033 Amborella trichopoda HOM05D004020 ORTHO05D004735 0.0e+00 1084.3 1076 55.9
Oeu007301.5 Olea europaea HOM05D004020 ORTHO05D004735 6.8e-308 1060.8 1249 50.4
Eucgr.B03912 Eucalyptus grandis HOM05D004020 ORTHO05D004735 7.0e-305 1050.8 966 61.5
Lsat_1_v5_gn_2_99000 Lactuca sativa HOM05D004020 ORTHO05D004735 4.7e-301 1038.1 1081 55.8
Os10g0546300 Oryza sativa ssp. japonica HOM05D004020 ORTHO05D004735 2.0e-296 1022.7 1071 53.7
Zm00001eb022740 Zea mays HOM05D004020 ORTHO05D004735 6.6e-295 1017.7 1072 54.1
Hund07762 Selenicereus undatus HOM05D004020 ORTHO05D004735 3.6e-293 1011.9 1071 53.7
SGA_v2.0_scaffold27G11582 Striga asiatica HOM05D004020 ORTHO05D004735 2.9e-290 1002.3 1275 48.2
MBI18_g10967_MAGBIO Magnolia biondii HOM05D004020 ORTHO05D004735 2.8e-285 985.7 1097 52.3
AUR62024038 Chenopodium quinoa HOM05D004020 ORTHO05D004735 1.7e-279 966.5 1079 52.9
ClCG01G012850 Citrullus lanatus HOM05D004020 ORTHO05D004735 5.2e-268 928.3 905 58.8
CANSAT64G0934 Cannabis sativa HOM05D004020 ORTHO05D004735 2.1e-264 916.4 969 55.7
DCAR_031639 Daucus carota HOM05D004020 ORTHO05D004735 3.8e-258 895.6 930 55.2
Hund00854 Selenicereus undatus HOM05D004020 ORTHO05D004735 3.6e-245 852.4 973 52.6
AUR62041305 Chenopodium quinoa HOM05D004020 ORTHO05D004735 7.6e-243 844.7 1046 50.1
Peaxi162Scf00150g00916 Petunia axillaris HOM05D004020 ORTHO05D004735 2.1e-237 826.6 842 57.2
Mapoly0001s0255 Marchantia polymorpha HOM05D004020 ORTHO05D004735 1.4e-220 770.8 1105 41.0
Pp3c16_8720 Physcomitrium patens HOM05D004020 ORTHO05D004735 6.9e-212 741.9 1101 40.8
SMO118G0476 Selaginella moellendorffii HOM05D004020 ORTHO05D004735 1.4e-209 734.2 1099 40.5
Pp3c5_16860 Physcomitrium patens HOM05D004020 ORTHO05D004735 1.9e-209 733.8 1125 40.6
AagrBONN_evm.TU.Sc2ySwM_340.402 Anthoceros agrestis HOM05D004020 ORTHO05D004735 1.6e-208 730.7 1126 39.3
Ah.01g015940 Amaranthus hybridus HOM05D004020 ORTHO05D004735 7.7e-203 711.8 711 56.4
Oeu008367.3 Olea europaea HOM05D004020 ORTHO05D004735 3.0e-199 699.9 876 49.9
Lj2C1000T5 Lonicera japonica HOM05D004020 ORTHO05D004735 1.3e-189 667.9 793 50.9
AagrBONN_evm.TU.Sc2ySwM_117.107 Anthoceros agrestis HOM05D004020 ORTHO05D004735 4.4e-182 642.9 1050 37.3
Gohir.A07G106066 Gossypium hirsutum HOM05D004020 ORTHO05D004735 2.9e-178 630.2 525 62.7
Lj2A1002G14 Lonicera japonica HOM05D004020 ORTHO05D004735 3.8e-178 629.8 646 53.4
Dinv12567 Davidia involucrata HOM05D004020 ORTHO05D004735 1.2e-176 624.8 951 44.2
SalBow6G5048 Salvia bowleyana HOM05D004020 ORTHO05D004735 2.0e-166 590.9 523 60.0
Haze_23514 Corylus avellana HOM05D004020 ORTHO05D004735 3.9e-162 576.6 652 54.3
unitig_746.g26602 Utricularia gibba HOM05D004020 ORTHO05D004735 5.4e-148 529.6 530 54.7
Gorai.001G118200 Gossypium raimondii HOM05D004020 ORTHO05D004735 2.8e-136 490.7 378 71.2
Gohir.A07G106132 Gossypium hirsutum HOM05D004020 ORTHO05D004735 1.2e-134 485.3 377 70.6
Cpa.g.sc47.20 Carica papaya HOM05D004020 ORTHO05D004735 6.2e-128 463.0 483 58.2
Lj2A1002G13 Lonicera japonica HOM05D004020 ORTHO05D004735 4.2e-108 397.1 401 57.1
SEGI_08231 Sequoiadendron giganteum HOM05D004020 ORTHO05D004735 2.2e-101 374.8 665 38.6
Peaxi162Scf00150g00917 Petunia axillaris HOM05D004020 ORTHO05D004735 3.8e-101 374.0 227 77.1
HPP92_022569 Vanilla planifolia HOM05D004020 ORTHO05D004735 1.4e-98 365.5 312 61.9
CBR_g49688 Chara braunii HOM05D004020 ORTHO05D004735 4.2e-92 344.0 823 32.4
unitig_746.g26604 Utricularia gibba HOM05D004020 ORTHO05D004735 3.3e-89 334.3 309 57.9
CANSAT64G1975 Cannabis sativa HOM05D004020 ORTHO05D004735 6.5e-85 320.1 189 77.2
QL01p014670 Quercus lobata HOM05D004020 ORTHO05D004735 5.5e-84 317.0 351 48.1
MCO09G744 Micromonas commoda HOM05D004020 ORTHO05D004735 1.2e-73 282.7 1029 25.8
Rhsim04G0218400 Rhododendron simsii HOM05D004020 ORTHO05D004735 1.2e-73 282.7 348 48.6
Cpa.g.sc47.22 Carica papaya HOM05D004020 ORTHO05D004735 1.5e-73 282.3 225 71.1
C06p19250 Brassica napus HOM05D004020 ORTHO05D004735 1.7e-72 278.9 246 64.2
C06p24240 Brassica napus HOM05D004020 ORTHO05D004735 1.7e-69 268.9 262 60.3
Haze_23513 Corylus avellana HOM05D004020 ORTHO05D004735 2.8e-64 251.5 189 68.3
Hma1.2p1_1225F.1_g268540 Hydrangea macrophylla HOM05D004020 ORTHO05D004735 8.6e-61 240.0 140 79.3
PRCOL_00006567 Prasinoderma coloniale HOM05D004020 ORTHO05D004735 1.5e-60 239.2 1227 22.4
arahy.Tifrunner.gnm1.ann1.FLM5Q5 Arachis hypogaea HOM05D004020 ORTHO05D004735 4.3e-60 237.7 198 58.6
HPP92_022573 Vanilla planifolia HOM05D004020 ORTHO05D004735 4.3e-60 237.7 143 77.6
Haze_23515 Corylus avellana HOM05D004020 ORTHO05D004735 2.8e-59 235.0 140 77.9
SHI06178 Sapria himalayana HOM05D004020 ORTHO05D004735 2.8e-59 235.0 555 33.9
AL580U10010 Arabidopsis lyrata HOM05D004020 ORTHO05D004735 7.5e-49 200.3 135 83.0
DCAR_031637 Daucus carota HOM05D004020 ORTHO05D004735 9.8e-49 199.9 120 78.3
Pp3c25_5430 Physcomitrium patens HOM05D004020 ORTHO05D004735 1.4e-47 196.1 544 32.4
Lj2C1000T6 Lonicera japonica HOM05D004020 ORTHO05D004735 1.2e-46 193.0 118 78.0
TAR633G2769 Trochodendron aralioides HOM05D004020 ORTHO05D004735 6.0e-46 190.7 119 75.6
SHI06179 Sapria himalayana HOM05D004020 ORTHO05D004735 3.2e-39 168.3 133 61.7
BcaC01g02437 Brassica carinata HOM05D004020 ORTHO05D004735 3.6e-35 154.8 150 58.0
C03p65310 Brassica napus HOM05D004020 ORTHO05D004735 6.2e-35 154.1 134 64.2
Cre10.g443350 Chlamydomonas reinhardtii HOM05D004020 ORTHO05D004735 1.8e-34 152.5 1144 20.0
Cpa.g.sc47.18 Carica papaya HOM05D004020 ORTHO05D004735 6.8e-34 150.6 87 80.5
ClCG01G012880 Citrullus lanatus HOM05D004020 ORTHO05D004735 4.4e-33 147.9 82 84.1
CANSAT64G1073 Cannabis sativa HOM05D004020 ORTHO05D004735 5.8e-33 147.5 82 82.9
unitig_746.g26603 Utricularia gibba HOM05D004020 ORTHO05D004735 1.9e-31 142.5 175 48.0
Rhsim04G0145900 Rhododendron simsii HOM05D000045 ORTHO05D003665 1.7e-29 136.0 116 60.3
FAN11G0203 Fragaria x ananassa HOM05D004020 ORTHO05D004735 3.0e-29 135.2 112 63.4
FAN21G0688 Fragaria x ananassa HOM05D004020 ORTHO05D004735 3.0e-29 135.2 112 63.4
arahy.Tifrunner.gnm1.ann1.LCV131 Arachis hypogaea HOM05D004020 ORTHO05D004735 1.8e-26 125.9 117 54.7
Nitab4.5_0027393g0010 Nicotiana tabacum HOM05D004020 ORTHO05D004735 2.4e-26 125.6 205 45.4
SEGI_13700 Sequoiadendron giganteum HOM05D004020 ORTHO05D004735 7.1e-23 114.0 107 57.9
Nitab4.5_0005230g0050 Nicotiana tabacum HOM05D004020 ORTHO05D004735 1.3e-21 109.8 164 44.5
SHI06176 Sapria himalayana HOM05D004020 ORTHO05D004735 7.3e-20 104.0 86 59.3
TAR476G0003 Trochodendron aralioides HOM05D004020 ORTHO05D004735 9.0e-18 97.1 82 69.5
SHI06174 Sapria himalayana HOM05D004020 ORTHO05D004735 1.2e-17 96.7 95 54.7
FAN16G3550 Fragaria x ananassa HOM05D004020 ORTHO05D004735 2.2e-16 92.4 82 61.0
Haze_23512 Corylus avellana HOM05D004020 ORTHO05D004735 6.4e-16 90.9 82 64.6
HPP92_022568 Vanilla planifolia HOM05D004020 ORTHO05D004735 1.4e-15 89.7 105 51.4
MD01G1172900 Malus domestica HOM05D004020 ORTHO05D004735 1.9e-15 89.4 82 59.8
Zm00001eb064060 Zea mays HOM05D002996 ORTHO05D003536 7.1e-15 87.4 110 45.5
Zm00001eb218380 Zea mays HOM05D002996 ORTHO05D003536 1.5e-12 79.7 90 43.3
Lsat_1_v5_gn_8_150800 Lactuca sativa HOM05D003321 ORTHO05D033839 2.5e-12 79.0 80 55.0
Zm00001eb302500 Zea mays HOM05D004020 ORTHO05D004735 2.5e-07 62.4 86 45.3
Nitab4.5_0011593g0020 Nicotiana tabacum HOM05D004020 ORTHO05D004735 4.6e-06 58.2 43 60.5
SHI06177 Sapria himalayana HOM05D004020 ORTHO05D004735 4.6e-06 58.2 47 57.4


User provided reference genes

Program Settings