Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB06g27986 Brassica carinata HOM05D004578 ORTHO05D005529 1.4e-248 862.4 416 100.0
BraA04t17495Z Brassica rapa HOM05D004578 ORTHO05D005529 1.3e-238 829.3 416 97.1
BolC4t26970H Brassica oleracea HOM05D004578 ORTHO05D005529 1.7e-238 828.9 416 97.1
A04p18950 Brassica napus HOM05D004578 ORTHO05D005529 2.2e-238 828.6 416 97.1
BcaC02g08438 Brassica carinata HOM05D004578 ORTHO05D005529 4.9e-238 827.4 416 96.9
C04p54190 Brassica napus HOM05D004578 ORTHO05D005529 4.9e-238 827.4 416 96.9
Sp4g03570 Schrenkiella parvula HOM05D004578 ORTHO05D005529 1.6e-225 785.8 413 92.5
CARHR117360 Cardamine hirsuta HOM05D004578 ORTHO05D005529 2.7e-220 768.5 413 89.6
Thhalv10000150m.g Eutrema salsugineum HOM05D004578 ORTHO05D005529 4.6e-220 767.7 415 88.9
Carub.0004s0400 Capsella rubella HOM05D004578 ORTHO05D005529 7.9e-220 766.9 412 90.3
AL4G15160 Arabidopsis lyrata HOM05D004578 ORTHO05D005529 3.9e-219 764.6 411 89.8
AT2G24580 Arabidopsis thaliana HOM05D004578 ORTHO05D005529 8.1e-217 756.9 412 89.1
BcaC02g08437 Brassica carinata HOM05D004578 ORTHO05D005529 4.0e-216 754.6 416 89.7
Aa31sc160G30 Aethionema arabicum HOM05D004578 ORTHO05D005529 4.8e-209 731.1 407 85.3
Aa31sc715G30 Aethionema arabicum HOM05D004578 ORTHO05D005529 2.6e-207 725.3 404 85.9
THA.LOC104819936 Tarenaya hassleriana HOM05D004578 ORTHO05D005529 1.5e-202 709.5 414 82.1
Potri.018G008700 Populus trichocarpa HOM05D004578 ORTHO05D005529 1.8e-179 632.9 409 73.1
Duzib168G2341 Durio zibethinus HOM05D004578 ORTHO05D005529 8.2e-177 624.0 417 71.7
Ciclev10008459m.g Citrus clementina HOM05D004578 ORTHO05D005529 3.5e-175 618.6 409 70.7
COL.COLO4_19019 Corchorus olitorius HOM05D004578 ORTHO05D005529 1.3e-174 616.7 400 71.8
Sabra18G0013200 Salix brachista HOM05D004578 ORTHO05D005529 5.0e-174 614.8 409 71.1
Sabra18G0015700 Salix brachista HOM05D004578 ORTHO05D005529 5.0e-174 614.8 409 71.1
Sabra06G0211200 Salix brachista HOM05D004578 ORTHO05D005529 3.2e-173 612.1 402 71.9
TWI32G0020 Tripterygium wilfordii HOM05D004578 ORTHO05D005529 5.5e-173 611.3 408 71.1
Gohir.A06G104800 Gossypium hirsutum HOM05D004578 ORTHO05D005529 9.4e-173 610.5 400 71.2
Thecc.09G008600 Theobroma cacao HOM05D004578 ORTHO05D005529 1.2e-172 610.1 408 70.8
Gorai.010G121600 Gossypium raimondii HOM05D004578 ORTHO05D005529 2.1e-172 609.4 404 70.5
Gohir.D06G107000 Gossypium hirsutum HOM05D004578 ORTHO05D005529 6.1e-172 607.8 404 70.5
Ciclev10008463m.g Citrus clementina HOM05D004578 ORTHO05D005529 8.0e-172 607.4 409 69.7
QL12p025440 Quercus lobata HOM05D004578 ORTHO05D005529 1.1e-170 603.6 401 70.6
MD08G1126500 Malus domestica HOM05D004578 ORTHO05D005529 1.5e-170 603.2 405 72.1
Manes.16G134500 Manihot esculenta HOM05D004578 ORTHO05D005529 3.3e-170 602.1 409 68.7
Atru.chr7.2661 Acer truncatum HOM05D004578 ORTHO05D005529 5.7e-170 601.3 416 69.2
Potri.006G272800 Populus trichocarpa HOM05D004578 ORTHO05D005529 7.5e-170 600.9 397 71.3
FAN27G0985 Fragaria x ananassa HOM05D004578 ORTHO05D005529 1.6e-167 593.2 398 69.8
FAN15G2443 Fragaria x ananassa HOM05D004578 ORTHO05D005529 2.7e-167 592.4 398 69.6
CANSAT25G1430 Cannabis sativa HOM05D004578 ORTHO05D005529 4.5e-167 591.7 402 68.9
MD15G1106400 Malus domestica HOM05D004578 ORTHO05D005529 7.7e-167 590.9 405 70.1
CSS0030954 Camellia sinensis var. sinensis HOM05D004578 ORTHO05D005529 2.9e-166 589.0 411 68.1
FAN20G1103 Fragaria x ananassa HOM05D004578 ORTHO05D005529 5.0e-166 588.2 398 69.1
Cpa.g.sc23.31 Carica papaya HOM05D004578 ORTHO05D005529 8.5e-166 587.4 412 67.2
Prupe.1G458600 Prunus persica HOM05D004578 ORTHO05D005529 8.5e-166 587.4 405 70.4
FvH4_2g36660 Fragaria vesca HOM05D004578 ORTHO05D005529 1.9e-165 586.3 398 68.8
Dinv04517 Davidia involucrata HOM05D004578 ORTHO05D005529 6.1e-164 581.3 417 67.9
Cfa013287 Carpinus fangiana HOM05D004578 ORTHO05D005529 8.8e-163 577.4 396 68.7
Manes.03G004800 Manihot esculenta HOM05D004578 ORTHO05D005529 1.2e-162 577.0 404 67.1
CiPaw.07G211300 Carya illinoinensis HOM05D004578 ORTHO05D005529 1.5e-162 576.6 397 69.5
ClCG05G026450 Citrullus lanatus HOM05D004578 ORTHO05D005529 7.5e-162 574.3 405 66.9
Haze_21761 Corylus avellana HOM05D004578 ORTHO05D005529 9.8e-162 573.9 396 68.7
QL12p025516 Quercus lobata HOM05D004578 ORTHO05D005529 1.1e-160 570.5 395 67.8
CsaV3_3G047160 Cucumis sativus L. HOM05D004578 ORTHO05D005529 1.8e-160 569.7 404 67.3
CiPaw.08G020700 Carya illinoinensis HOM05D004578 ORTHO05D005529 9.1e-160 567.4 394 67.8
Nn8g40733 Nelumbo nucifera HOM05D004578 ORTHO05D005529 9.1e-160 567.4 402 67.2
MELO3C003620.2 Cucumis melo HOM05D004578 ORTHO05D005529 1.2e-159 567.0 405 66.7
vmacro18918 Vaccinium macrocarpon HOM05D004578 ORTHO05D005529 3.5e-159 565.5 412 67.0
TAR625G0669 Trochodendron aralioides HOM05D004578 ORTHO05D005529 1.0e-158 563.9 410 65.1
Eucgr.C04012 Eucalyptus grandis HOM05D004578 ORTHO05D005529 2.2e-158 562.8 400 65.5
Prupe.1G458900 Prunus persica HOM05D004578 ORTHO05D005529 2.9e-158 562.4 412 67.2
Cfa013284 Carpinus fangiana HOM05D004578 ORTHO05D005529 1.5e-157 560.1 396 66.7
Nitab4.5_0000555g0200 Nicotiana tabacum HOM05D004578 ORTHO05D005529 5.2e-155 551.6 400 65.0
Sed0023873 Sechium edule HOM05D004578 ORTHO05D005529 1.2e-154 550.4 403 66.0
Peaxi162Scf00045g01734 Petunia axillaris HOM05D004578 ORTHO05D005529 2.0e-154 549.7 399 64.2
Aqoxy7G02848 Aquilegia oxysepala HOM05D004578 ORTHO05D005529 4.4e-154 548.5 409 64.3
PSO063G3790 Papaver somniferum HOM05D004578 ORTHO05D005529 4.4e-154 548.5 402 63.2
PSO170G4894 Papaver somniferum HOM05D004578 ORTHO05D005529 4.4e-154 548.5 402 63.2
RcHm_v2.0_Chr6g0305131 Rosa chinensis HOM05D004578 ORTHO05D005529 1.3e-153 547.0 398 65.6
Cfa013283 Carpinus fangiana HOM05D004578 ORTHO05D005529 3.7e-153 545.4 386 66.3
Rhsim10G0084800 Rhododendron simsii HOM05D004578 ORTHO05D005529 3.7e-153 545.4 394 66.5
DCAR_000687 Daucus carota HOM05D004578 ORTHO05D005529 2.4e-152 542.7 403 61.3
Lsat_1_v5_gn_9_4341 Lactuca sativa HOM05D004578 ORTHO05D005529 2.4e-152 542.7 416 63.0
Cc08_g06480 Coffea canephora HOM05D004578 ORTHO05D005529 3.1e-152 542.3 401 63.8
Migut.A00428 Erythranthe guttata HOM05D004578 ORTHO05D005529 3.1e-152 542.3 410 64.1
Medtr3g108990 Medicago truncatula HOM05D004578 ORTHO05D005529 4.1e-152 542.0 387 64.6
PGR044G1507 Punica granatum HOM05D004578 ORTHO05D005529 2.7e-151 539.3 411 62.3
Actinidia06432 Actinidia chinensis HOM05D004578 ORTHO05D005529 2.3e-150 536.2 420 61.9
MBI16_g05839_MAGBIO Magnolia biondii HOM05D004578 ORTHO05D005529 2.9e-150 535.8 411 61.6
Lj7P748T39 Lonicera japonica HOM05D004578 ORTHO05D005529 3.8e-150 535.4 397 64.2
EL10Ac2g02417 Beta vulgaris HOM05D004578 ORTHO05D005529 1.1e-149 533.9 403 60.8
CAN.G673.19 Capsicum annuum HOM05D004578 ORTHO05D005529 1.5e-149 533.5 400 62.8
SGA_v2.0_scaffold193G40672 Striga asiatica HOM05D004578 ORTHO05D005529 4.3e-149 531.9 410 62.9
AUR62037713 Chenopodium quinoa HOM05D004578 ORTHO05D005529 3.6e-148 528.9 400 61.5
AUR62020290 Chenopodium quinoa HOM05D004578 ORTHO05D005529 4.7e-148 528.5 407 60.9
Hund13109 Selenicereus undatus HOM05D004578 ORTHO05D005529 4.7e-148 528.5 408 61.0
Nitab4.5_0004131g0050 Nicotiana tabacum HOM05D004578 ORTHO05D005529 8.0e-148 527.7 391 63.4
arahy.Tifrunner.gnm1.ann1.M0AD1K Arachis hypogaea HOM05D004578 ORTHO05D005529 1.0e-147 527.3 402 60.4
arahy.Tifrunner.gnm1.ann1.W2ETIH Arachis hypogaea HOM05D004578 ORTHO05D005529 1.8e-147 526.6 402 60.7
Solyc08g006430.4 Solanum lycopersicum HOM05D004578 ORTHO05D005529 1.8e-147 526.6 407 60.4
MSTRG.25795 Avicennia marina HOM05D004578 ORTHO05D005529 4.0e-147 525.4 401 62.3
TPR.G12360 Trifolium pratense HOM05D004578 ORTHO05D005529 5.2e-147 525.0 390 60.8
Ca_15651_v3 Cicer arietinum L. HOM05D004578 ORTHO05D005529 1.5e-146 523.5 388 62.9
Ca_15659_v3 Cicer arietinum L. HOM05D004578 ORTHO05D005529 1.5e-146 523.5 388 62.9
HanXRQChr15g0466441 Helianthus annuus HOM05D004578 ORTHO05D005529 1.5e-146 523.5 416 61.1
Sopen08g002370 Solanum pennellii HOM05D004578 ORTHO05D005529 1.5e-146 523.5 401 60.3
PGSC0003DMG400026320 Solanum tuberosum HOM05D004578 ORTHO05D005529 1.5e-146 523.5 400 61.5
Ah.13g067790 Amaranthus hybridus HOM05D004578 ORTHO05D005529 4.4e-146 521.9 401 60.8
VMungo1309G1783 Vigna mungo HOM05D004578 ORTHO05D005529 4.4e-146 521.9 387 63.3
SalBow4G0906 Salvia bowleyana HOM05D004578 ORTHO05D005529 5.7e-146 521.5 406 61.6
TAR383G0560 Trochodendron aralioides HOM05D004578 ORTHO05D005529 9.8e-146 520.8 398 61.1
Eucgr.C04016 Eucalyptus grandis HOM05D004578 ORTHO05D005529 1.3e-145 520.4 390 62.1
TAR383G1032 Trochodendron aralioides HOM05D004578 ORTHO05D005529 2.9e-145 519.2 398 60.8
Medtr3g109010 Medicago truncatula HOM05D004578 ORTHO05D005529 2.4e-144 516.2 397 60.7
Eucgr.C04014 Eucalyptus grandis HOM05D004578 ORTHO05D005529 5.4e-144 515.0 390 62.1
TPR.G12429 Trifolium pratense HOM05D004578 ORTHO05D005529 5.4e-144 515.0 387 62.8
ECA247G3559 Erigeron canadensis HOM05D004578 ORTHO05D005529 9.2e-144 514.2 417 59.5
Lj1g0024454 Lotus japonicus HOM05D004578 ORTHO05D005529 2.0e-143 513.1 387 61.8
Phvul.009G102000 Phaseolus vulgaris HOM05D004578 ORTHO05D005529 2.0e-143 513.1 391 61.6
HanXRQChr10g0282951 Helianthus annuus HOM05D004578 ORTHO05D005529 2.7e-143 512.7 418 59.8
Sc07g0007360 Simmondsia chinensis HOM05D004578 ORTHO05D005529 5.9e-143 511.5 406 59.4
Ca_15652_v3 Cicer arietinum L. HOM05D004578 ORTHO05D005529 2.3e-142 509.6 375 62.9
Ca_15660_v3 Cicer arietinum L. HOM05D004578 ORTHO05D005529 2.3e-142 509.6 375 62.9
Prupe.1G458800 Prunus persica HOM05D004578 ORTHO05D005529 2.3e-139 499.6 408 62.3
Glyma.04G076300 Glycine max HOM05D004578 ORTHO05D005529 4.0e-139 498.8 386 61.1
Psat5g024080 Pisum sativum HOM05D004578 ORTHO05D005529 6.8e-139 498.0 390 58.7
MBI13_g34048_MAGBIO Magnolia biondii HOM05D004578 ORTHO05D005529 2.6e-138 496.1 400 59.5
Cc00_g13120 Coffea canephora HOM05D004578 ORTHO05D005529 4.4e-138 495.4 399 59.4
CDE02G4459 Ceratophyllum demersum HOM05D004578 ORTHO05D005529 2.7e-135 486.1 392 59.2
Actinidia22261 Actinidia chinensis HOM05D004578 ORTHO05D005529 9.8e-130 467.6 411 57.9
Lalb_Chr11g0064181 Lupinus albus HOM05D004578 ORTHO05D005529 8.3e-129 464.5 385 56.9
ATR0626G173 Amborella trichopoda HOM05D004578 ORTHO05D005529 7.8e-127 458.0 406 56.4
Zm00001eb317190 Zea mays HOM05D004578 ORTHO05D005529 7.8e-127 458.0 403 54.6
Os09g0498500 Oryza sativa ssp. japonica HOM05D004578 ORTHO05D005529 1.7e-126 456.8 408 56.6
unitig_32.g11237 Utricularia gibba HOM05D004578 ORTHO05D005529 3.9e-126 455.7 396 56.8
SEGI_31206 Sequoiadendron giganteum HOM05D004578 ORTHO05D005529 6.4e-121 438.3 409 52.1
Os12g0543600 Oryza sativa ssp. japonica HOM05D004578 ORTHO05D005529 6.2e-116 421.8 380 55.5
Zm00001eb127180 Zea mays HOM05D004578 ORTHO05D005529 8.1e-116 421.4 407 53.1
SEGI_11947 Sequoiadendron giganteum HOM05D004578 ORTHO05D005529 1.1e-115 421.0 406 51.2
Os01g0316100 Oryza sativa ssp. japonica HOM05D004578 ORTHO05D005529 2.4e-115 419.9 405 54.1
Zm00001eb340420 Zea mays HOM05D004578 ORTHO05D005529 5.3e-107 392.1 394 52.0
Pp3c9_3640 Physcomitrium patens HOM05D004578 ORTHO05D005529 2.2e-105 386.7 405 47.7
Mapoly0152s0014 Marchantia polymorpha HOM05D004578 ORTHO05D005529 4.9e-105 385.6 409 48.4
Zm00001eb140430 Zea mays HOM05D004578 ORTHO05D005529 6.7e-102 375.2 406 49.0
SMO115G0125 Selaginella moellendorffii HOM05D004578 ORTHO05D005529 3.4e-98 362.8 406 46.1
AagrBONN_evm.TU.Sc2ySwM_368.3376 Anthoceros agrestis HOM05D004578 ORTHO05D005529 2.4e-96 356.7 400 47.0
Gohir.D06G106866 Gossypium hirsutum HOM05D004578 ORTHO05D005529 2.1e-95 353.6 402 48.5
Gorai.010G121400 Gossypium raimondii HOM05D004578 ORTHO05D005529 2.1e-87 327.0 402 44.0
GSVIVG01033177001 Vitis vinifera HOM05D004578 ORTHO05D005529 9.6e-85 318.2 409 45.2
Psat5g025320 Pisum sativum HOM05D004578 ORTHO05D005529 1.4e-83 314.3 257 56.4
Oeu018556.1 Olea europaea HOM05D004578 ORTHO05D005529 1.5e-77 294.3 400 42.2
Oeu008773.1 Olea europaea HOM05D004578 ORTHO05D005529 4.3e-77 292.7 400 43.0
HPP92_017393 Vanilla planifolia HOM05D004578 ORTHO05D005529 2.8e-76 290.0 398 41.0
Hma1.2p1_1588F.1_g292320 Hydrangea macrophylla HOM05D004578 ORTHO05D005529 3.7e-76 289.7 400 43.5
Cfa013285 Carpinus fangiana HOM05D004578 ORTHO05D005529 4.8e-68 262.7 229 58.1
unitig_32.g11239 Utricularia gibba HOM05D004578 ORTHO05D005529 2.3e-62 243.8 185 61.1
Lalb_Chr23g0269171 Lupinus albus HOM05D004578 ORTHO05D005529 2.0e-61 240.7 157 70.1
PRCOL_00000645 Prasinoderma coloniale HOM05D004578 ORTHO05D005529 2.2e-57 227.3 427 33.7
HanXRQChr10g0282961 Helianthus annuus HOM05D004578 ORTHO05D005529 8.0e-39 165.6 154 54.5
Ca_28680_v3 Cicer arietinum L. HOM05D004578 ORTHO05D005529 9.2e-35 152.1 376 28.7
Cc08_g06580 Coffea canephora HOM05D004578 ORTHO05D005529 2.3e-33 147.5 115 61.7
unitig_32.g11238 Utricularia gibba HOM05D004578 ORTHO05D005529 2.3e-30 137.5 144 54.2
Actinidia22262 Actinidia chinensis HOM05D004578 ORTHO05D005529 3.2e-27 127.1 317 27.8
TPR.G12332 Trifolium pratense HOM05D004578 ORTHO05D005529 3.5e-26 123.6 79 72.2
Cre12.g493500 Chlamydomonas reinhardtii HOM05D004578 ORTHO05D005529 6.2e-23 112.8 409 27.1
COL.COLO4_30024 Corchorus olitorius HOM05D004578 ORTHO05D005529 7.8e-10 69.3 38 81.6
Psat0s2347g0040 Pisum sativum HOM05D004578 ORTHO05D005529 3.3e-08 63.9 58 48.3
VMungo1041G0001 Vigna mungo HOM05D004578 ORTHO05D005529 4.3e-08 63.5 49 59.2
Psat2g052560 Pisum sativum HOM05D004790 ORTHO05D005678 8.9e-06 55.8 48 52.1


User provided reference genes

Program Settings