Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB06g27834 Brassica carinata HOM05D005421 ORTHO05D031867 6.4e-79 297.4 151 100.0
BcaC05g26559 Brassica carinata HOM05D000147 ORTHO05D039487 1.6e-21 106.7 79 70.9
Sp1g01890 Schrenkiella parvula HOM05D000147 ORTHO05D001254 1.0e-15 87.4 124 49.2
CARHR002240 Cardamine hirsuta HOM05D000147 ORTHO05D001254 2.5e-14 82.8 112 50.0
BcaC07g42297 Brassica carinata HOM05D000147 ORTHO05D001254 3.2e-14 82.4 98 54.1
A10p01550 Brassica napus HOM05D000147 ORTHO05D001254 4.2e-14 82.0 125 46.4
BolC5t28934H Brassica oleracea HOM05D000147 ORTHO05D001254 4.2e-14 82.0 125 46.4
BraA10t42430Z Brassica rapa HOM05D000147 ORTHO05D001254 4.2e-14 82.0 125 46.4
BcaB01g03524 Brassica carinata HOM05D005421 ORTHO05D007601 2.1e-13 79.7 69 63.8
BcaC01g05387 Brassica carinata HOM05D005421 ORTHO05D007601 2.1e-13 79.7 69 63.8
A03p22860 Brassica napus HOM05D005421 ORTHO05D007601 2.1e-13 79.7 69 63.8
C03p27110 Brassica napus HOM05D005421 ORTHO05D007601 2.1e-13 79.7 69 63.8
BolC3t15092H Brassica oleracea HOM05D005421 ORTHO05D007601 2.1e-13 79.7 69 63.8
BraA03t11510Z Brassica rapa HOM05D005421 ORTHO05D007601 2.1e-13 79.7 69 63.8
Sp4g22980 Schrenkiella parvula HOM05D005421 ORTHO05D007601 2.1e-13 79.7 69 63.8
Aa31LG3G1470 Aethionema arabicum HOM05D005421 ORTHO05D007601 2.7e-13 79.3 69 63.8
Thhalv10006579m.g Eutrema salsugineum HOM05D000147 ORTHO05D001254 2.7e-13 79.3 124 49.2
FAN02G3486 Fragaria x ananassa HOM05D005421 ORTHO05D007601 2.7e-13 79.3 73 60.3
AT2G40650 Arabidopsis thaliana HOM05D005421 ORTHO05D007601 3.6e-13 79.0 69 62.3
VMungo0720G1843 Vigna mungo HOM05D005421 ORTHO05D007601 3.6e-13 79.0 68 63.2
CARHR135760 Cardamine hirsuta HOM05D005421 ORTHO05D007601 4.7e-13 78.6 69 62.3
Lalb_Chr02g0148011 Lupinus albus HOM05D005421 ORTHO05D007601 4.7e-13 78.6 69 62.3
AL1G12330 Arabidopsis lyrata HOM05D000147 ORTHO05D001254 6.1e-13 78.2 98 52.0
BcaC02g07328 Brassica carinata HOM05D005421 ORTHO05D007601 6.1e-13 78.2 69 60.9
A09p68470 Brassica napus HOM05D000147 ORTHO05D001254 6.1e-13 78.2 124 46.0
C04p68470 Brassica napus HOM05D005421 ORTHO05D007601 6.1e-13 78.2 69 60.9
BolC4t28347H Brassica oleracea HOM05D005421 ORTHO05D007601 6.1e-13 78.2 69 60.9
Dinv24409 Davidia involucrata HOM05D005421 ORTHO05D007601 6.1e-13 78.2 69 59.4
HanXRQChr01g0011821 Helianthus annuus HOM05D005421 ORTHO05D007601 8.0e-13 77.8 69 60.9
Lsat_1_v5_gn_7_73220 Lactuca sativa HOM05D005421 ORTHO05D007601 8.0e-13 77.8 69 60.9
GSVIVG01031188001 Vitis vinifera HOM05D005421 ORTHO05D007601 8.0e-13 77.8 69 62.3
AL4G38520 Arabidopsis lyrata HOM05D005421 ORTHO05D007601 1.0e-12 77.4 69 60.9
A04p31080 Brassica napus HOM05D005421 ORTHO05D007601 1.0e-12 77.4 69 60.9
BraA04t18563Z Brassica rapa HOM05D005421 ORTHO05D007601 1.0e-12 77.4 69 60.9
Lalb_Chr21g0310441 Lupinus albus HOM05D005421 ORTHO05D007601 1.0e-12 77.4 69 59.4
Rhsim11G0092200 Rhododendron simsii HOM05D005421 ORTHO05D007601 1.0e-12 77.4 69 59.4
Cfa006671 Carpinus fangiana HOM05D005421 ORTHO05D007601 1.4e-12 77.0 69 60.9
Dinv30846 Davidia involucrata HOM05D005421 ORTHO05D007601 1.4e-12 77.0 69 59.4
Glyma.10G149900 Glycine max HOM05D005421 ORTHO05D007601 1.4e-12 77.0 69 59.4
Glyma.20G238500 Glycine max HOM05D005421 ORTHO05D007601 1.4e-12 77.0 69 59.4
Manes.13G000084 Manihot esculenta HOM05D005421 ORTHO05D007601 1.4e-12 77.0 69 62.3
Sed0018701 Sechium edule HOM05D005421 ORTHO05D007601 1.4e-12 77.0 69 60.9
Actinidia35540 Actinidia chinensis HOM05D005421 ORTHO05D007601 1.8e-12 76.6 69 59.4
Carub.0004s2294 Capsella rubella HOM05D005421 ORTHO05D007601 1.8e-12 76.6 69 60.9
Ca_10154_v3 Cicer arietinum L. HOM05D005421 ORTHO05D007601 1.8e-12 76.6 68 61.8
Ca_29832_v3 Cicer arietinum L. HOM05D005421 ORTHO05D007601 1.8e-12 76.6 68 61.8
Lj5g0011296 Lotus japonicus HOM05D005421 ORTHO05D007601 1.8e-12 76.6 69 60.9
Phvul.007G199400 Phaseolus vulgaris HOM05D005421 ORTHO05D007601 1.8e-12 76.6 69 60.9
Psat6g151720 Pisum sativum HOM05D005421 ORTHO05D007601 1.8e-12 76.6 68 61.8
Sabra13G0010600 Salix brachista HOM05D005421 ORTHO05D007601 1.8e-12 76.6 69 58.0
SalBow1G5723 Salvia bowleyana HOM05D005421 ORTHO05D007601 1.8e-12 76.6 69 62.3
C05p01550 Brassica napus HOM05D000147 ORTHO05D001254 2.3e-12 76.3 126 45.2
CiPaw.07G025400 Carya illinoinensis HOM05D005421 ORTHO05D007601 2.3e-12 76.3 69 59.4
MELO3C004206.2 Cucumis melo HOM05D005421 ORTHO05D007601 2.3e-12 76.3 69 59.4
Nn4g25707 Nelumbo nucifera HOM05D005421 ORTHO05D007601 2.3e-12 76.3 69 60.9
RcHm_v2.0_Chr3g0456541 Rosa chinensis HOM05D005421 ORTHO05D007601 2.3e-12 76.3 69 59.4
SGA_v2.0_scaffold4G01947 Striga asiatica HOM05D005421 ORTHO05D007601 2.3e-12 76.3 69 60.9
TWI12G1149 Tripterygium wilfordii HOM05D005421 ORTHO05D007601 2.3e-12 76.3 69 59.4
Aqoxy2G02863 Aquilegia oxysepala HOM05D005421 ORTHO05D007601 3.0e-12 75.9 69 59.4
AT1G02890 Arabidopsis thaliana HOM05D000147 ORTHO05D001254 3.0e-12 75.9 94 52.1
Migut.B01005 Erythranthe guttata HOM05D005421 ORTHO05D007601 3.0e-12 75.9 69 60.9
PSO170G1114 Papaver somniferum HOM05D005421 ORTHO05D007601 3.0e-12 75.9 69 59.4
PSO407G0035 Papaver somniferum HOM05D005421 ORTHO05D007601 3.0e-12 75.9 69 59.4
Potri.013G012000 Populus trichocarpa HOM05D005421 ORTHO05D007601 3.0e-12 75.9 69 59.4
Prupe.1G236900 Prunus persica HOM05D005421 ORTHO05D007601 3.0e-12 75.9 69 59.4
TWI56G0052 Tripterygium wilfordii HOM05D005421 ORTHO05D007601 3.0e-12 75.9 69 58.0
BcaB06g29166 Brassica carinata HOM05D005421 ORTHO05D007601 4.0e-12 75.5 69 60.9
QL03p018920 Quercus lobata HOM05D005421 ORTHO05D007601 4.0e-12 75.5 69 59.4
ClCG02G015170 Citrullus lanatus HOM05D005421 ORTHO05D007601 5.2e-12 75.1 69 58.0
Haze_04100 Corylus avellana HOM05D005421 ORTHO05D007601 5.2e-12 75.1 69 59.4
CsaV3_2G006840 Cucumis sativus L. HOM05D005421 ORTHO05D007601 5.2e-12 75.1 69 58.0
FvH4_6g07010 Fragaria vesca HOM05D005421 ORTHO05D007601 5.2e-12 75.1 69 58.0
FAN05G0688 Fragaria x ananassa HOM05D005421 ORTHO05D007601 5.2e-12 75.1 69 58.0
FAN09G4258 Fragaria x ananassa HOM05D000389 ORTHO05D000287 5.2e-12 75.1 69 58.0
FAN14G1909 Fragaria x ananassa HOM05D005421 ORTHO05D007601 5.2e-12 75.1 69 58.0
THA.LOC104805907 Tarenaya hassleriana HOM05D005421 ORTHO05D007601 5.2e-12 75.1 69 59.4
CSS0007056 Camellia sinensis var. sinensis HOM05D005421 ORTHO05D007601 6.7e-12 74.7 69 56.5
CSS0046729 Camellia sinensis var. sinensis HOM05D005421 ORTHO05D007601 6.7e-12 74.7 69 56.5
AUR62005243 Chenopodium quinoa HOM05D005421 ORTHO05D007601 6.7e-12 74.7 69 58.0
Lj9A202T65 Lonicera japonica HOM05D005421 ORTHO05D007601 6.7e-12 74.7 69 59.4
Thecc.06G040900 Theobroma cacao HOM05D005421 ORTHO05D007601 6.7e-12 74.7 69 58.0
EL10Ac4g09870 Beta vulgaris HOM05D005421 ORTHO05D007601 8.8e-12 74.3 69 58.0
BcaC05g24630 Brassica carinata HOM05D000147 ORTHO05D001254 1.2e-11 73.9 126 44.4
Ciclev10001489m.g Citrus clementina HOM05D005421 ORTHO05D007601 1.2e-11 73.9 69 56.5
Medtr1g083720 Medicago truncatula HOM05D005421 ORTHO05D007601 1.2e-11 73.9 68 60.3
THA.LOC104820733 Tarenaya hassleriana HOM05D005421 ORTHO05D007601 1.2e-11 73.9 69 58.0
Atru.chr2.115 Acer truncatum HOM05D005421 ORTHO05D007601 1.5e-11 73.6 68 57.4
MD12G1209800 Malus domestica HOM05D005421 ORTHO05D007601 1.5e-11 73.6 69 58.0
TAR636G1951 Trochodendron aralioides HOM05D005421 ORTHO05D007601 1.5e-11 73.6 68 57.4
Ah.04g161240 Amaranthus hybridus HOM05D005421 ORTHO05D007601 2.0e-11 73.2 69 56.5
DCAR_004503 Daucus carota HOM05D005421 ORTHO05D007601 2.0e-11 73.2 69 55.1
Eucgr.H03270 Eucalyptus grandis HOM05D005421 ORTHO05D007601 2.0e-11 73.2 69 59.4
MD04G1196900 Malus domestica HOM05D005421 ORTHO05D007601 2.0e-11 73.2 68 58.8
PGR031G1007 Punica granatum HOM05D005421 ORTHO05D007601 2.0e-11 73.2 69 55.1
AUR62000721 Chenopodium quinoa HOM05D005421 ORTHO05D007601 2.6e-11 72.8 69 56.5
Cpa.g.sc48.125 Carica papaya HOM05D005421 ORTHO05D007601 3.3e-11 72.4 77 54.5
ECA236G4663 Erigeron canadensis HOM05D005421 ORTHO05D007601 3.3e-11 72.4 69 55.1
Oeu045895.1 Olea europaea HOM05D005421 ORTHO05D007601 3.3e-11 72.4 65 61.5
Peaxi162Scf00037g01816 Petunia axillaris HOM05D005421 ORTHO05D007601 3.3e-11 72.4 68 55.9
Hund07118 Selenicereus undatus HOM05D005421 ORTHO05D007601 3.3e-11 72.4 69 56.5
PGSC0003DMG400024728 Solanum tuberosum HOM05D005421 ORTHO05D007601 3.3e-11 72.4 68 55.9
CANSAT54G2596 Cannabis sativa HOM05D005421 ORTHO05D007601 4.4e-11 72.0 69 56.5
CAN.G1273.26 Capsicum annuum HOM05D005421 ORTHO05D007601 4.4e-11 72.0 68 55.9
CDE02G0330 Ceratophyllum demersum HOM05D005421 ORTHO05D007601 4.4e-11 72.0 69 56.5
Os09g0103600 Oryza sativa ssp. japonica HOM05D005421 ORTHO05D007601 5.7e-11 71.6 77 55.8
Prupe.6G317400 Prunus persica HOM05D005421 ORTHO05D007601 5.7e-11 71.6 69 56.5
MBI18_g04564_MAGBIO Magnolia biondii HOM05D005421 ORTHO05D007601 7.5e-11 71.2 69 55.1
Zm00001eb095730 Zea mays HOM05D005421 ORTHO05D007601 7.5e-11 71.2 77 53.2
COL.COLO4_26689 Corchorus olitorius HOM05D005421 ORTHO05D007601 9.7e-11 70.9 68 58.8
vmacro01533 Vaccinium macrocarpon HOM05D005421 ORTHO05D007601 9.7e-11 70.9 100 43.0
arahy.Tifrunner.gnm1.ann1.1MC3I0 Arachis hypogaea HOM05D005421 ORTHO05D007601 1.3e-10 70.5 90 46.7
arahy.Tifrunner.gnm1.ann1.MB2RBZ Arachis hypogaea HOM05D005421 ORTHO05D007601 1.3e-10 70.5 90 46.7
Cc02_g34540 Coffea canephora HOM05D005421 ORTHO05D007601 1.3e-10 70.5 68 57.4
Sc16g0008670 Simmondsia chinensis HOM05D005421 ORTHO05D007601 1.3e-10 70.5 69 53.6
HPP92_020212 Vanilla planifolia HOM05D005421 ORTHO05D007601 1.3e-10 70.5 68 57.4
HPP92_020232 Vanilla planifolia HOM05D005421 ORTHO05D007601 1.3e-10 70.5 68 57.4
C05p26140 Brassica napus HOM05D000147 ORTHO05D039487 1.7e-10 70.1 46 78.3
Duzib150G0691 Durio zibethinus HOM05D005421 ORTHO05D007601 1.7e-10 70.1 69 53.6
Nitab4.5_0001971g0070 Nicotiana tabacum HOM05D005421 ORTHO05D007601 1.7e-10 70.1 68 54.4
Nitab4.5_0002612g0040 Nicotiana tabacum HOM05D005421 ORTHO05D007601 1.7e-10 70.1 68 54.4
Solyc01g100060.4 Solanum lycopersicum HOM05D005421 ORTHO05D007601 1.7e-10 70.1 68 55.9
Sopen01g043590 Solanum pennellii HOM05D005421 ORTHO05D007601 1.7e-10 70.1 68 55.9
A06p21740 Brassica napus HOM05D049374 ORTHO05D031867 2.8e-10 69.3 38 84.2
BraA01t00321Z Brassica rapa HOM05D049374 ORTHO05D031867 2.8e-10 69.3 38 84.2
Gohir.A10G155100 Gossypium hirsutum HOM05D005421 ORTHO05D007601 2.8e-10 69.3 69 52.2
Gohir.D10G110800 Gossypium hirsutum HOM05D005421 ORTHO05D007601 2.8e-10 69.3 69 52.2
Gorai.011G122100 Gossypium raimondii HOM05D005421 ORTHO05D007601 2.8e-10 69.3 69 52.2
COL.COLO4_07356 Corchorus olitorius HOM05D005421 ORTHO05D007601 6.3e-10 68.2 68 54.4
Thecc.01G297700 Theobroma cacao HOM05D000147 ORTHO05D001254 1.1e-09 67.4 112 42.0
TWI38G1969 Tripterygium wilfordii HOM05D005421 ORTHO05D007601 1.1e-09 67.4 69 55.1
BcaB01g02461 Brassica carinata HOM05D000147 ORTHO05D001254 1.4e-09 67.0 124 43.5
CARHR250770 Cardamine hirsuta HOM05D000147 ORTHO05D001254 1.8e-09 66.6 124 42.7
AT4G02480 Arabidopsis thaliana HOM05D000147 ORTHO05D001254 2.4e-09 66.2 98 46.9
AagrBONN_evm.TU.Sc2ySwM_117.208 Anthoceros agrestis HOM05D005421 ORTHO05D007601 3.1e-09 65.9 69 52.2
BcaC01g06754 Brassica carinata HOM05D000147 ORTHO05D001254 3.1e-09 65.9 124 42.7
A03p31040 Brassica napus HOM05D000147 ORTHO05D001254 3.1e-09 65.9 124 42.7
C03p37830 Brassica napus HOM05D000147 ORTHO05D001254 3.1e-09 65.9 124 42.7
BolC3t16072H Brassica oleracea HOM05D000147 ORTHO05D001254 3.1e-09 65.9 124 42.7
BraA03t12281Z Brassica rapa HOM05D000147 ORTHO05D001254 3.1e-09 65.9 124 42.7
BraA09t35843Z Brassica rapa HOM05D000147 ORTHO05D001254 3.1e-09 65.9 124 41.9
BcaC03g16129 Brassica carinata HOM05D000147 ORTHO05D001254 4.1e-09 65.5 124 41.9
C02p39060 Brassica napus HOM05D000147 ORTHO05D001254 4.1e-09 65.5 124 41.9
Nitab4.5_0003248g0020 Nicotiana tabacum HOM05D005421 ORTHO05D007601 4.1e-09 65.5 67 52.2
AL6G50580 Arabidopsis lyrata HOM05D000147 ORTHO05D001254 5.3e-09 65.1 109 45.9
A02p24760 Brassica napus HOM05D000147 ORTHO05D001254 5.3e-09 65.1 98 45.9
Mapoly0138s0022 Marchantia polymorpha HOM05D005421 ORTHO05D007601 5.3e-09 65.1 69 55.1
BcaNung04057 Brassica carinata HOM05D000147 ORTHO05D001254 7.0e-09 64.7 124 41.9
A09p01930 Brassica napus HOM05D000147 ORTHO05D001254 7.0e-09 64.7 124 41.9
C09p02020 Brassica napus HOM05D000147 ORTHO05D001254 7.0e-09 64.7 124 41.9
BolC9t53132H Brassica oleracea HOM05D000147 ORTHO05D001254 7.0e-09 64.7 124 41.9
Potri.005G021600 Populus trichocarpa HOM05D005421 ORTHO05D007601 9.1e-09 64.3 45 66.7
CBR_g27792 Chara braunii HOM05D005421 ORTHO05D007601 1.2e-08 63.9 69 53.6
Sp6g02380 Schrenkiella parvula HOM05D000147 ORTHO05D001254 1.2e-08 63.9 124 41.1
Aa31LG5G2110 Aethionema arabicum HOM05D000147 ORTHO05D001254 1.6e-08 63.5 125 40.8
BcaB04g16941 Brassica carinata HOM05D000147 ORTHO05D023783 1.6e-08 63.5 124 41.9
Thhalv10028366m.g Eutrema salsugineum HOM05D000147 ORTHO05D001254 1.6e-08 63.5 124 42.7
SMO361G0640 Selaginella moellendorffii HOM05D005421 ORTHO05D007601 1.6e-08 63.5 77 49.4
TWI14G0377 Tripterygium wilfordii HOM05D000147 ORTHO05D001254 1.6e-08 63.5 114 40.4
ATR0469G001 Amborella trichopoda HOM05D005421 ORTHO05D007601 2.0e-08 63.2 69 55.1
ATR1164G001 Amborella trichopoda HOM05D005421 ORTHO05D007601 2.0e-08 63.2 69 55.1
A06p21750 Brassica napus HOM05D000147 ORTHO05D042651 2.0e-08 63.2 114 39.5
SEGI_07889 Sequoiadendron giganteum HOM05D005421 ORTHO05D007601 2.0e-08 63.2 145 34.5
BcaB01g02037 Brassica carinata HOM05D000147 ORTHO05D001254 2.7e-08 62.8 124 41.1
Carub.0006s3466 Capsella rubella HOM05D000147 ORTHO05D001254 3.5e-08 62.4 98 43.9
Cre12.g503400 Chlamydomonas reinhardtii HOM05D005421 ORTHO05D007601 3.5e-08 62.4 69 44.9
BcaNung04060 Brassica carinata HOM05D000147 ORTHO05D001254 4.5e-08 62.0 98 44.9
Cpa.g.sc9.217 Carica papaya HOM05D000147 ORTHO05D001254 5.9e-08 61.6 118 41.5
BraA09t42190Z Brassica rapa HOM05D000147 ORTHO05D001254 7.7e-08 61.2 79 50.6
THA.LOC104825975 Tarenaya hassleriana HOM05D000147 ORTHO05D001254 7.7e-08 61.2 100 44.0
Gohir.A11G115000 Gossypium hirsutum HOM05D000147 ORTHO05D001254 1.0e-07 60.8 111 41.4
Gohir.D11G120000 Gossypium hirsutum HOM05D000147 ORTHO05D001254 1.0e-07 60.8 111 41.4
Gorai.007G128700 Gossypium raimondii HOM05D000147 ORTHO05D001254 1.0e-07 60.8 111 41.4
Duzib138G0484 Durio zibethinus HOM05D000147 ORTHO05D001254 1.3e-07 60.5 112 41.1
THA.LOC104815931 Tarenaya hassleriana HOM05D000147 ORTHO05D001254 1.7e-07 60.1 101 44.6
Peaxi162Scf00404g00814 Petunia axillaris HOM05D005421 ORTHO05D007601 2.2e-07 59.7 71 49.3
Pp3c1_35390 Physcomitrium patens HOM05D005421 ORTHO05D007601 2.2e-07 59.7 68 50.0
BraA02t07462Z Brassica rapa HOM05D000147 ORTHO05D001254 3.8e-07 58.9 68 54.4
COL.COLO4_23369 Corchorus olitorius HOM05D000147 ORTHO05D001254 3.8e-07 58.9 112 40.2
Duzib133G1165 Durio zibethinus HOM05D000147 ORTHO05D001254 5.0e-07 58.5 112 40.2
BolC2t09916H Brassica oleracea HOM05D000147 ORTHO05D001254 6.5e-07 58.2 158 36.1
Gohir.A08G101000 Gossypium hirsutum HOM05D000147 ORTHO05D001254 1.5e-06 57.0 112 40.2
Gohir.A08G101080 Gossypium hirsutum HOM05D000147 ORTHO05D001254 1.5e-06 57.0 112 40.2
Gorai.004G089000 Gossypium raimondii HOM05D000147 ORTHO05D001254 1.5e-06 57.0 112 39.3
TWI59G0815 Tripterygium wilfordii HOM05D000147 ORTHO05D001254 2.5e-06 56.2 113 40.7
Gohir.D08G084600 Gossypium hirsutum HOM05D000147 ORTHO05D001254 7.2e-06 54.7 112 38.4
THA.LOC104801270 Tarenaya hassleriana HOM05D000147 ORTHO05D001254 9.4e-06 54.3 114 39.5


User provided reference genes

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