Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB06g27766 Brassica carinata HOM05D006341 ORTHO05D000377 3.4e-261 904.4 448 100.0
C04p50300 Brassica napus HOM05D006341 ORTHO05D000377 5.6e-232 807.4 450 90.4
BolC4t26628H Brassica oleracea HOM05D006341 ORTHO05D000377 5.6e-232 807.4 450 90.4
A04p15870 Brassica napus HOM05D006341 ORTHO05D000377 1.3e-231 806.2 449 89.1
BraA04t17219Z Brassica rapa HOM05D006341 ORTHO05D000377 3.1e-230 801.6 451 89.4
AL4G10160 Arabidopsis lyrata HOM05D006341 ORTHO05D000377 4.7e-210 734.6 482 79.3
Sp4g00210 Schrenkiella parvula HOM05D006341 ORTHO05D000377 2.6e-208 728.8 499 77.8
Carub.0003s3491 Capsella rubella HOM05D006341 ORTHO05D000377 6.3e-207 724.2 491 77.2
AT2G21070 Arabidopsis thaliana HOM05D006341 ORTHO05D000377 1.1e-206 723.4 486 78.6
Thhalv10000146m.g Eutrema salsugineum HOM05D006341 ORTHO05D000377 7.0e-206 720.7 490 76.3
CARHR111910 Cardamine hirsuta HOM05D006341 ORTHO05D000377 1.8e-201 706.1 481 78.0
THA.LOC104807791 Tarenaya hassleriana HOM05D006341 ORTHO05D000377 7.5e-184 647.5 499 68.5
Aa31LG7G15600 Aethionema arabicum HOM05D006341 ORTHO05D000377 1.3e-183 646.7 475 70.9
Ciclev10028267m.g Citrus clementina HOM05D006341 ORTHO05D000377 3.1e-174 615.5 496 63.7
Duzib132G0346 Durio zibethinus HOM05D006341 ORTHO05D000377 1.0e-172 610.5 481 64.0
COL.COLO4_17298 Corchorus olitorius HOM05D006341 ORTHO05D000377 1.8e-169 599.7 478 63.2
Gohir.D12G033900 Gossypium hirsutum HOM05D006341 ORTHO05D000377 2.3e-169 599.4 477 63.9
Atru.chr5.3271 Acer truncatum HOM05D006341 ORTHO05D000377 6.8e-169 597.8 486 62.3
Manes.11G082657 Manihot esculenta HOM05D006341 ORTHO05D000377 8.9e-169 597.4 486 63.0
Gorai.008G034900 Gossypium raimondii HOM05D006341 ORTHO05D000377 1.2e-168 597.0 477 63.7
Thecc.02G064100 Theobroma cacao HOM05D006341 ORTHO05D000377 5.8e-168 594.7 480 62.9
Gohir.A12G038400 Gossypium hirsutum HOM05D006341 ORTHO05D000377 7.5e-168 594.3 477 63.5
Oeu006673.1 Olea europaea HOM05D006341 ORTHO05D000377 2.9e-167 592.4 492 61.4
CSS0004411 Camellia sinensis var. sinensis HOM05D006341 ORTHO05D000377 1.9e-166 589.7 491 60.9
Dinv04950 Davidia involucrata HOM05D006341 ORTHO05D000377 1.2e-165 587.0 495 61.0
FvH4_2g01620 Fragaria vesca HOM05D006341 ORTHO05D000377 3.5e-165 585.5 491 61.3
TAR381G0106 Trochodendron aralioides HOM05D006341 ORTHO05D000377 1.7e-164 583.2 495 60.0
Prupe.8G162700 Prunus persica HOM05D006341 ORTHO05D000377 3.0e-164 582.4 500 60.6
RcHm_v2.0_Chr6g0244441 Rosa chinensis HOM05D006341 ORTHO05D000377 5.0e-164 581.6 486 61.9
RcHm_v2.0_Chr6g0244411 Rosa chinensis HOM05D006341 ORTHO05D000377 6.6e-164 581.3 485 61.9
Hma1.2p1_0032F.1_g019570 Hydrangea macrophylla HOM05D006341 ORTHO05D000377 1.9e-163 579.7 496 59.9
Potri.004G172100 Populus trichocarpa HOM05D006341 ORTHO05D000377 2.5e-163 579.3 492 61.0
Sabra04G0114400 Salix brachista HOM05D006341 ORTHO05D000377 1.6e-162 576.6 492 60.0
TWI53G1223 Tripterygium wilfordii HOM05D006341 ORTHO05D000377 1.6e-162 576.6 493 60.2
MD05G1118100 Malus domestica HOM05D006341 ORTHO05D000377 2.8e-162 575.9 492 59.1
CAN.G134.236 Capsicum annuum HOM05D006341 ORTHO05D000377 5.2e-161 571.6 487 60.4
COL.COLO4_17179 Corchorus olitorius HOM05D006341 ORTHO05D000377 8.9e-161 570.9 459 62.3
CANSAT25G3024 Cannabis sativa HOM05D006341 ORTHO05D000377 2.6e-160 569.3 485 59.4
QL11p049167 Quercus lobata HOM05D006341 ORTHO05D000377 2.6e-160 569.3 478 61.1
Solyc01g098460.4 Solanum lycopersicum HOM05D006341 ORTHO05D000377 7.5e-160 567.8 493 60.0
Peaxi162Scf00434g00625 Petunia axillaris HOM05D006341 ORTHO05D000377 9.8e-160 567.4 491 59.5
CsaV3_7G000880 Cucumis sativus L. HOM05D006341 ORTHO05D000377 1.3e-159 567.0 489 59.9
Sopen01g042030 Solanum pennellii HOM05D006341 ORTHO05D000377 6.4e-159 564.7 493 59.4
Cc06_g16120 Coffea canephora HOM05D006341 ORTHO05D000377 1.4e-158 563.5 494 59.9
HanXRQChr17g0553851 Helianthus annuus HOM05D006341 ORTHO05D000377 9.2e-158 560.8 454 61.9
Lsat_1_v5_gn_8_124961 Lactuca sativa HOM05D006341 ORTHO05D000377 9.2e-158 560.8 461 62.0
Psat7g085760 Pisum sativum HOM05D006341 ORTHO05D000377 9.2e-158 560.8 494 57.9
TPR.G31245 Trifolium pratense HOM05D006341 ORTHO05D000377 2.1e-157 559.7 498 58.4
Haze_02181 Corylus avellana HOM05D006341 ORTHO05D000377 1.0e-156 557.4 475 59.6
vmacro02264 Vaccinium macrocarpon HOM05D006341 ORTHO05D000377 1.3e-156 557.0 531 56.5
PGR042G0052 Punica granatum HOM05D006341 ORTHO05D000377 2.3e-156 556.2 469 61.0
Atru.chr5.3277 Acer truncatum HOM05D006341 ORTHO05D000377 3.0e-156 555.8 477 59.7
Aqoxy5G01641 Aquilegia oxysepala HOM05D006341 ORTHO05D000377 3.0e-156 555.8 478 59.8
Haze_02174 Corylus avellana HOM05D006341 ORTHO05D000377 5.1e-156 555.1 475 59.4
Nn7g37263 Nelumbo nucifera HOM05D006341 ORTHO05D000377 5.1e-156 555.1 494 58.3
MSTRG.16892 Avicennia marina HOM05D006341 ORTHO05D000377 3.3e-155 552.4 495 57.8
Lj4g0012983 Lotus japonicus HOM05D006341 ORTHO05D000377 1.6e-154 550.1 487 58.3
arahy.Tifrunner.gnm1.ann1.UN7M5W Arachis hypogaea HOM05D006341 ORTHO05D000377 3.1e-153 545.8 490 57.3
Migut.B00102 Erythranthe guttata HOM05D006341 ORTHO05D000377 3.1e-153 545.8 482 58.5
Hund06416 Selenicereus undatus HOM05D006341 ORTHO05D000377 4.0e-153 545.4 516 56.6
EL10Ac9g21414 Beta vulgaris HOM05D006341 ORTHO05D000377 5.2e-153 545.0 509 57.2
arahy.Tifrunner.gnm1.ann1.MR7L4V Arachis hypogaea HOM05D006341 ORTHO05D000377 6.8e-153 544.7 491 57.4
Actinidia00608 Actinidia chinensis HOM05D006341 ORTHO05D000377 2.6e-152 542.7 470 60.6
SalBow1G4312 Salvia bowleyana HOM05D006341 ORTHO05D000377 1.3e-151 540.4 492 55.7
Sc08g0003080 Simmondsia chinensis HOM05D006341 ORTHO05D000377 1.3e-151 540.4 527 56.0
SGA_v2.0_scaffold58G20406 Striga asiatica HOM05D006341 ORTHO05D000377 1.7e-151 540.0 469 58.4
Nitab4.5_0001423g0020 Nicotiana tabacum HOM05D006341 ORTHO05D000377 4.1e-150 535.4 487 56.9
Ca_18243_v3 Cicer arietinum L. HOM05D006341 ORTHO05D000377 4.6e-149 531.9 489 57.5
MBI02_g27965_MAGBIO Magnolia biondii HOM05D006341 ORTHO05D000377 4.6e-149 531.9 483 57.6
FAN20G2467 Fragaria x ananassa HOM05D006341 ORTHO05D000377 6.6e-148 528.1 443 61.6
GSVIVG01024058001 Vitis vinifera HOM05D006341 ORTHO05D000377 6.6e-148 528.1 462 60.2
FAN24G0408 Fragaria x ananassa HOM05D006341 ORTHO05D000377 1.9e-147 526.6 449 60.8
AUR62010072 Chenopodium quinoa HOM05D006341 ORTHO05D000377 2.5e-147 526.2 501 55.1
Glyma.08G087700 Glycine max HOM05D006341 ORTHO05D000377 6.2e-146 521.5 491 56.4
Eucgr.G01768 Eucalyptus grandis HOM05D006341 ORTHO05D000377 8.1e-146 521.2 494 55.7
Os02g0121200 Oryza sativa ssp. japonica HOM05D006341 ORTHO05D000377 1.1e-145 520.8 465 57.6
CDE05G1540 Ceratophyllum demersum HOM05D006341 ORTHO05D000377 3.1e-145 519.2 504 55.6
ECA233G1460 Erigeron canadensis HOM05D006341 ORTHO05D000377 4.0e-145 518.8 458 57.9
Glyma.05G133200 Glycine max HOM05D006341 ORTHO05D000377 8.9e-145 517.7 487 55.9
unitig_60.g25823 Utricularia gibba HOM05D006341 ORTHO05D000377 1.2e-144 517.3 452 58.4
Dinv39489 Davidia involucrata HOM05D006341 ORTHO05D000377 2.0e-144 516.5 459 59.0
Lalb_Chr13g0293551 Lupinus albus HOM05D006341 ORTHO05D000377 7.6e-144 514.6 521 53.0
Lj5A183G92 Lonicera japonica HOM05D006341 ORTHO05D000377 9.9e-144 514.2 461 59.7
Rhsim11G0190600 Rhododendron simsii HOM05D006341 ORTHO05D000377 3.8e-143 512.3 498 56.6
Sed0009186 Sechium edule HOM05D006341 ORTHO05D000377 4.9e-143 511.9 450 59.3
MELO3C013369.2 Cucumis melo HOM05D006341 ORTHO05D000377 6.4e-143 511.5 448 60.0
Nitab4.5_0001903g0070 Nicotiana tabacum HOM05D006341 ORTHO05D000377 1.0e-140 504.2 415 61.4
ClCG02G004230 Citrullus lanatus HOM05D006341 ORTHO05D000377 3.0e-140 502.7 500 54.4
VMungo0251G3227 Vigna mungo HOM05D006341 ORTHO05D000377 7.3e-139 498.0 451 58.3
Phvul.002G189600 Phaseolus vulgaris HOM05D006341 ORTHO05D000377 2.8e-138 496.1 450 59.3
HPP92_014019 Vanilla planifolia HOM05D006341 ORTHO05D000377 3.6e-138 495.7 485 55.3
Ah.01g008830 Amaranthus hybridus HOM05D006341 ORTHO05D000377 1.2e-136 490.7 491 53.2
ATR0810G159 Amborella trichopoda HOM05D006341 ORTHO05D000377 1.2e-136 490.7 504 51.4
SHI05717 Sapria himalayana HOM05D006341 ORTHO05D000377 6.4e-135 485.0 475 54.1
Carub.0004s0010 Capsella rubella HOM05D006341 ORTHO05D000377 2.0e-128 463.4 487 56.5
SEGI_13829 Sequoiadendron giganteum HOM05D006341 ORTHO05D000377 6.4e-127 458.4 516 47.9
SEGI_22420 Sequoiadendron giganteum HOM05D006341 ORTHO05D000377 6.4e-127 458.4 516 47.9
AagrBONN_evm.TU.Sc2ySwM_228.2682 Anthoceros agrestis HOM05D006341 ORTHO05D000377 1.8e-121 440.3 458 51.3
QL11p048584 Quercus lobata HOM05D006341 ORTHO05D000377 9.9e-120 434.5 433 53.3
Cpa.g.sc37.173 Carica papaya HOM05D006341 ORTHO05D000377 8.4e-119 431.4 446 54.3
Zm00001eb208320 Zea mays HOM05D006341 ORTHO05D000377 2.5e-118 429.9 388 57.7
Mapoly0085s0033 Marchantia polymorpha HOM05D006341 ORTHO05D000377 8.7e-116 421.4 565 43.2
Pp3c8_21040 Physcomitrium patens HOM05D006341 ORTHO05D000377 7.6e-112 408.3 550 43.5
Potri.009G131700 Populus trichocarpa HOM05D006341 ORTHO05D000377 9.0e-105 384.8 316 62.3
SMO169G0079 Selaginella moellendorffii HOM05D006341 ORTHO05D000377 9.4e-102 374.8 438 47.7
CiPaw.06G124100 Carya illinoinensis HOM05D006341 ORTHO05D000377 2.2e-98 363.6 354 55.4
Ca_18241_v3 Cicer arietinum L. HOM05D006341 ORTHO05D000377 8.8e-92 341.7 403 47.9
Atru.chr5.3221 Acer truncatum HOM05D006341 ORTHO05D000377 1.1e-89 334.7 269 62.1
Nitab4.5_0008354g0020 Nicotiana tabacum HOM05D006341 ORTHO05D000377 8.5e-87 325.1 316 54.7
FAN22G0308 Fragaria x ananassa HOM05D003409 ORTHO05D004015 2.8e-74 283.5 259 58.3
MCO01G168 Micromonas commoda HOM05D006341 ORTHO05D000377 3.7e-66 256.5 302 45.4
Cre01.g044150 Chlamydomonas reinhardtii HOM05D006341 ORTHO05D000377 5.2e-60 236.1 392 35.2
PGSC0003DMG401028564 Solanum tuberosum HOM05D006341 ORTHO05D000377 1.4e-57 228.0 142 74.6
Sabra09G0102100 Salix brachista HOM05D006341 ORTHO05D000377 1.3e-50 204.9 268 46.3
CBR_g23939 Chara braunii HOM05D006341 ORTHO05D000377 1.2e-40 171.8 189 46.6
PRCOL_00006207 Prasinoderma coloniale HOM05D006341 ORTHO05D000377 2.1e-40 171.0 334 32.3
PGSC0003DMG402028564 Solanum tuberosum HOM05D006341 ORTHO05D000377 3.2e-33 147.1 114 62.3
FAN07G1625 Fragaria x ananassa HOM05D006341 ORTHO05D000377 9.2e-33 145.6 97 71.1
Oeu063293.1 Olea europaea HOM05D006341 ORTHO05D000377 3.5e-24 117.1 119 53.8
Actinidia20497 Actinidia chinensis HOM05D006341 ORTHO05D000377 2.8e-21 107.5 74 67.6
FAN07G2354 Fragaria x ananassa HOM05D006341 ORTHO05D000377 2.2e-18 97.8 141 41.1
Atru.chr5.3222 Acer truncatum HOM05D006341 ORTHO05D000377 1.9e-09 68.2 119 38.7
MD10G1121100 Malus domestica HOM05D006341 ORTHO05D000377 7.4e-06 56.2 43 60.5


User provided reference genes

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