Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB06g27340 Brassica carinata HOM05D004214 ORTHO05D004963 4.5e-186 654.4 328 100.0
BcaB06g27320 Brassica carinata HOM05D004214 ORTHO05D004963 1.3e-121 440.3 227 94.7
C04p45960 Brassica napus HOM05D004214 ORTHO05D004963 1.7e-121 439.9 227 94.7
BolC4t26179H Brassica oleracea HOM05D004214 ORTHO05D004963 1.7e-121 439.9 227 94.7
BraA04t16892Z Brassica rapa HOM05D004214 ORTHO05D004963 3.9e-121 438.7 227 94.3
A04p12280 Brassica napus HOM05D004214 ORTHO05D004963 1.5e-120 436.8 227 94.3
Sp7g02440 Schrenkiella parvula HOM05D004214 ORTHO05D004963 7.6e-109 397.9 227 85.9
Thhalv10028063m.g Eutrema salsugineum HOM05D004214 ORTHO05D004963 2.1e-106 389.8 232 83.2
BraA04t16891Z Brassica rapa HOM05D004214 ORTHO05D004963 4.6e-106 388.7 227 82.8
A04p12270 Brassica napus HOM05D004214 ORTHO05D004963 7.8e-106 387.9 227 83.3
AT5G39520 Arabidopsis thaliana HOM05D004214 ORTHO05D004963 3.2e-99 365.9 227 79.7
AL7G50790 Arabidopsis lyrata HOM05D004214 ORTHO05D004963 9.3e-99 364.4 233 78.1
CARHR262810 Cardamine hirsuta HOM05D004214 ORTHO05D004963 8.7e-97 357.8 229 78.6
Carub.0007s3643 Capsella rubella HOM05D004214 ORTHO05D004963 5.6e-96 355.1 226 79.2
Thhalv10027904m.g Eutrema salsugineum HOM05D004214 ORTHO05D004963 2.8e-95 352.8 217 79.7
Sp7g02430 Schrenkiella parvula HOM05D004214 ORTHO05D004963 4.0e-94 349.0 216 76.9
BraA04t16893Z Brassica rapa HOM05D004214 ORTHO05D004963 4.5e-93 345.5 222 74.3
A04p12290 Brassica napus HOM05D004214 ORTHO05D004963 1.3e-92 344.0 222 73.9
CARHR262760 Cardamine hirsuta HOM05D004214 ORTHO05D004963 1.7e-92 343.6 229 75.1
C04p45970 Brassica napus HOM05D004214 ORTHO05D004963 2.2e-92 343.2 222 74.3
BolC4t26180H Brassica oleracea HOM05D004214 ORTHO05D004963 2.2e-92 343.2 222 74.3
AL7G50770 Arabidopsis lyrata HOM05D004214 ORTHO05D004963 2.9e-92 342.8 228 74.6
BcaB06g27341 Brassica carinata HOM05D004214 ORTHO05D004963 1.6e-90 337.0 222 73.0
Carub.0007s3642 Capsella rubella HOM05D004214 ORTHO05D004963 3.0e-89 332.8 230 72.2
BcaB06g27319 Brassica carinata HOM05D004214 ORTHO05D004963 2.0e-85 320.1 227 73.1
AT5G39530 Arabidopsis thaliana HOM05D004214 ORTHO05D004963 4.2e-83 312.4 205 73.7
THA.LOC104805483 Tarenaya hassleriana HOM05D004214 ORTHO05D004963 4.3e-80 302.4 214 71.0
CARHR262800 Cardamine hirsuta HOM05D004214 ORTHO05D004963 6.9e-78 295.0 187 76.5
Dinv11505 Davidia involucrata HOM05D004214 ORTHO05D004963 2.9e-76 289.7 211 67.3
TWI60G1366 Tripterygium wilfordii HOM05D004214 ORTHO05D004963 1.9e-75 287.0 208 66.8
GSVIVG01011460001 Vitis vinifera HOM05D004214 ORTHO05D004963 9.3e-75 284.6 200 67.5
C04p45950 Brassica napus HOM05D004214 ORTHO05D004963 1.1e-72 277.7 227 65.2
Atru.chr8.322 Acer truncatum HOM05D004214 ORTHO05D004963 5.7e-72 275.4 193 66.8
Actinidia06102 Actinidia chinensis HOM05D004214 ORTHO05D004963 5.7e-72 275.4 189 67.2
Cpa.g.sc14.113 Carica papaya HOM05D004214 ORTHO05D004963 5.7e-72 275.4 190 67.9
Manes.02G048700 Manihot esculenta HOM05D004214 ORTHO05D004963 1.3e-71 274.2 216 64.4
Potri.017G087500 Populus trichocarpa HOM05D004214 ORTHO05D004963 3.7e-71 272.7 197 66.5
Sc10g0003430 Simmondsia chinensis HOM05D004214 ORTHO05D004963 6.3e-71 271.9 189 68.3
CSS0015906 Camellia sinensis var. sinensis HOM05D004214 ORTHO05D004963 1.8e-70 270.4 190 65.3
CSS0019671 Camellia sinensis var. sinensis HOM05D004214 ORTHO05D004963 1.8e-70 270.4 190 65.3
TWI34G0797 Tripterygium wilfordii HOM05D004214 ORTHO05D004963 6.9e-70 268.5 208 63.0
TWI34G1333 Tripterygium wilfordii HOM05D004214 ORTHO05D004963 6.9e-70 268.5 208 63.0
TAR629G3302 Trochodendron aralioides HOM05D004214 ORTHO05D004963 7.6e-69 265.0 197 65.0
Ciclev10012515m.g Citrus clementina HOM05D004214 ORTHO05D004963 1.7e-68 263.8 198 65.2
Migut.H00677 Erythranthe guttata HOM05D004214 ORTHO05D004963 1.7e-68 263.8 196 62.8
Eucgr.I02016 Eucalyptus grandis HOM05D004214 ORTHO05D004963 6.5e-68 261.9 187 65.8
Hma1.2p1_0409F.1_g146710 Hydrangea macrophylla HOM05D004214 ORTHO05D004963 1.9e-67 260.4 185 66.5
CSS0036969 Camellia sinensis var. sinensis HOM05D004214 ORTHO05D004963 4.2e-67 259.2 212 60.4
Duzib147G0992 Durio zibethinus HOM05D004214 ORTHO05D004963 4.2e-67 259.2 190 63.2
Oeu010226.1 Olea europaea HOM05D004214 ORTHO05D004963 1.2e-66 257.7 197 61.9
Oeu010227.1 Olea europaea HOM05D004214 ORTHO05D004963 1.2e-66 257.7 197 61.9
MSTRG.23916 Avicennia marina HOM05D004214 ORTHO05D004963 2.7e-66 256.5 188 63.8
Cc07_g03630 Coffea canephora HOM05D004214 ORTHO05D004963 6.1e-66 255.4 188 63.8
EL10Ac2g03019 Beta vulgaris HOM05D004214 ORTHO05D004963 1.0e-65 254.6 197 60.9
Solyc02g067120.4 Solanum lycopersicum HOM05D004214 ORTHO05D004963 3.0e-65 253.1 185 63.2
Sopen02g016310 Solanum pennellii HOM05D004214 ORTHO05D004963 3.0e-65 253.1 185 63.2
Lsat_1_v5_gn_4_169740 Lactuca sativa HOM05D004214 ORTHO05D004963 3.9e-65 252.7 200 60.0
HanXRQChr15g0487741 Helianthus annuus HOM05D004214 ORTHO05D004963 1.5e-64 250.8 195 61.5
PGSC0003DMG400025136 Solanum tuberosum HOM05D004214 ORTHO05D004963 7.4e-64 248.4 209 58.9
Thecc.04G087300 Theobroma cacao HOM05D004214 ORTHO05D004963 7.4e-64 248.4 203 57.6
Gorai.001G240700 Gossypium raimondii HOM05D004214 ORTHO05D004963 9.7e-64 248.1 185 61.1
SalBow1G5883 Salvia bowleyana HOM05D004214 ORTHO05D004963 1.3e-63 247.7 197 60.9
ECA232G2753 Erigeron canadensis HOM05D004214 ORTHO05D005214 3.7e-63 246.1 185 64.3
Rhsim10G0035800 Rhododendron simsii HOM05D004214 ORTHO05D004963 2.0e-61 240.4 189 60.3
COL.COLO4_12225 Corchorus olitorius HOM05D004214 ORTHO05D004963 7.7e-61 238.4 170 64.7
Lj3A346G23 Lonicera japonica HOM05D004214 ORTHO05D004963 7.7e-61 238.4 188 58.5
Rhsim10G0035900 Rhododendron simsii HOM05D004214 ORTHO05D004963 1.0e-60 238.0 201 55.2
Nitab4.5_0010283g0010 Nicotiana tabacum HOM05D004214 ORTHO05D004963 5.0e-60 235.7 190 58.9
CAN.G979.5 Capsicum annuum HOM05D004214 ORTHO05D004963 2.7e-58 229.9 194 56.7
unitig_62.g23442 Utricularia gibba HOM05D004214 ORTHO05D004963 2.7e-58 229.9 212 52.8
DCAR_011079 Daucus carota HOM05D004214 ORTHO05D004963 4.6e-58 229.2 210 54.3
AUR62018111 Chenopodium quinoa HOM05D004214 ORTHO05D004963 6.1e-58 228.8 196 55.1
ATR0564G445 Amborella trichopoda HOM05D004214 ORTHO05D004963 7.9e-58 228.4 236 50.8
Hund15587 Selenicereus undatus HOM05D004214 ORTHO05D004963 3.0e-57 226.5 233 48.5
Nn4g23269 Nelumbo nucifera HOM05D004214 ORTHO05D004963 2.8e-55 219.9 145 66.9
PSO478G0939 Papaver somniferum HOM05D004214 ORTHO05D004963 2.8e-55 219.9 187 57.2
CDE02G0918 Ceratophyllum demersum HOM05D004214 ORTHO05D004963 3.7e-55 219.5 212 51.9
PSO017G4463 Papaver somniferum HOM05D004214 ORTHO05D004963 1.4e-54 217.6 187 56.7
QL02p084825 Quercus lobata HOM05D004214 ORTHO05D004963 1.2e-53 214.5 189 53.4
AUR62034445 Chenopodium quinoa HOM05D004214 ORTHO05D004963 5.9e-53 212.2 167 58.1
SGA_v2.0_scaffold413G51175 Striga asiatica HOM05D004214 ORTHO05D004963 5.9e-53 212.2 191 56.0
Nitab4.5_0000568g0170 Nicotiana tabacum HOM05D004214 ORTHO05D004963 4.2e-51 206.1 192 51.6
Solyc02g088270.3 Solanum lycopersicum HOM05D004214 ORTHO05D004963 1.2e-50 204.5 201 51.7
SEGI_32476 Sequoiadendron giganteum HOM05D004214 ORTHO05D004963 2.7e-50 203.4 206 48.1
Gohir.D07G212700 Gossypium hirsutum HOM05D004214 ORTHO05D004963 1.0e-49 201.4 153 59.5
QL02p084872 Quercus lobata HOM05D004214 ORTHO05D004963 1.0e-49 201.4 189 51.3
PGSC0003DMG401001341 Solanum tuberosum HOM05D004214 ORTHO05D004963 1.0e-49 201.4 198 53.0
BolC4t26178H Brassica oleracea HOM05D004214 ORTHO05D004963 1.4e-49 201.1 120 81.7
Sopen02g032950 Solanum pennellii HOM05D004214 ORTHO05D004963 1.4e-49 201.1 201 51.7
PGR004G0346 Punica granatum HOM05D004214 ORTHO05D004963 1.8e-49 200.7 137 65.7
CAN.G206.176 Capsicum annuum HOM05D004214 ORTHO05D004963 3.0e-49 199.9 188 51.6
Peaxi162Scf00629g00121 Petunia axillaris HOM05D004214 ORTHO05D004963 5.2e-49 199.1 229 47.6
PGSC0003DMG402001341 Solanum tuberosum HOM05D004214 ORTHO05D004963 5.7e-48 195.7 216 47.2
Lj2g0002943 Lotus japonicus HOM05D004214 ORTHO05D004963 2.4e-46 190.3 191 46.6
Ca_04853_v3 Cicer arietinum L. HOM05D004214 ORTHO05D004963 9.1e-46 188.3 198 45.5
TPR.G14395 Trifolium pratense HOM05D004214 ORTHO05D004963 7.7e-45 185.3 192 45.3
Lj8A426T27 Lonicera japonica HOM05D004214 ORTHO05D004963 1.7e-44 184.1 150 56.0
Lj3A369T15 Lonicera japonica HOM05D004214 ORTHO05D004963 2.9e-44 183.3 141 58.2
Lj8A428G27 Lonicera japonica HOM05D004214 ORTHO05D004963 3.8e-44 183.0 187 49.2
arahy.Tifrunner.gnm1.ann1.55PBKN Arachis hypogaea HOM05D004214 ORTHO05D004963 1.1e-43 181.4 197 43.7
Nitab4.5_0000212g0090 Nicotiana tabacum HOM05D004214 ORTHO05D004963 4.2e-43 179.5 190 47.4
arahy.Tifrunner.gnm1.ann1.7SZ544 Arachis hypogaea HOM05D004214 ORTHO05D004963 5.5e-43 179.1 197 43.1
Lj2g0016815 Lotus japonicus HOM05D004214 ORTHO05D004963 9.4e-43 178.3 190 45.3
QL02p084854 Quercus lobata HOM05D004214 ORTHO05D004963 1.2e-42 177.9 321 36.1
Lj3A367T10 Lonicera japonica HOM05D004214 ORTHO05D004963 2.1e-42 177.2 166 52.4
Lj4P113T24 Lonicera japonica HOM05D004214 ORTHO05D004963 2.7e-42 176.8 134 60.4
Peaxi162Scf00166g01050 Petunia axillaris HOM05D004214 ORTHO05D004963 3.0e-41 173.3 191 46.6
TPR.G26214 Trifolium pratense HOM05D004214 ORTHO05D004963 6.7e-41 172.2 192 42.2
Medtr6g012830 Medicago truncatula HOM05D004214 ORTHO05D004963 8.8e-41 171.8 190 43.7
Lj3A352G14 Lonicera japonica HOM05D004214 ORTHO05D004963 3.3e-40 169.9 134 57.5
Glyma.13G060852 Glycine max HOM05D004214 ORTHO05D004963 5.7e-40 169.1 202 41.6
Psat1g070480 Pisum sativum HOM05D004214 ORTHO05D004963 2.2e-39 167.2 167 46.1
Lalb_Chr06g0175181 Lupinus albus HOM05D004214 ORTHO05D004963 1.4e-38 164.5 189 42.9
Os03g0168300 Oryza sativa ssp. japonica HOM05D004214 ORTHO05D004963 2.4e-38 163.7 205 42.0
VMungo0464G0566 Vigna mungo HOM05D004214 ORTHO05D004963 2.4e-38 163.7 196 41.8
Mapoly0033s0115 Marchantia polymorpha HOM05D004214 ORTHO05D004963 1.2e-37 161.4 210 36.2
PGR083G1063 Punica granatum HOM05D004214 ORTHO05D004963 1.2e-37 161.4 190 44.7
Prupe.3G263500 Prunus persica HOM05D004214 ORTHO05D004963 1.6e-37 161.0 189 43.4
Zm00001eb402430 Zea mays HOM05D004214 ORTHO05D004963 2.7e-37 160.2 211 38.9
ClCG09G017980 Citrullus lanatus HOM05D004214 ORTHO05D004963 3.5e-37 159.8 184 43.5
Glyma.19G025600 Glycine max HOM05D004214 ORTHO05D004963 3.5e-37 159.8 191 41.9
MD09G1055000 Malus domestica HOM05D004214 ORTHO05D004963 3.5e-37 159.8 189 39.2
Phvul.004G031400 Phaseolus vulgaris HOM05D004214 ORTHO05D004963 4.5e-37 159.5 200 40.0
MELO3C033594.2 Cucumis melo HOM05D004214 ORTHO05D004963 2.9e-36 156.8 181 44.8
Lj2g0001860 Lotus japonicus HOM05D004214 ORTHO05D004963 1.5e-35 154.5 141 49.6
Zm00001eb328430 Zea mays HOM05D004214 ORTHO05D004963 3.2e-35 153.3 170 47.1
Psat1g071840 Pisum sativum HOM05D004214 ORTHO05D004963 1.6e-34 151.0 191 38.2
Lj2g0019349 Lotus japonicus HOM05D004214 ORTHO05D004963 2.1e-34 150.6 180 38.9
CsaV3_5G038250 Cucumis sativus L. HOM05D004214 ORTHO05D004963 4.7e-34 149.4 181 42.0
Gohir.A07G206700 Gossypium hirsutum HOM05D004214 ORTHO05D004963 4.7e-34 149.4 96 67.7
Os07g0633000 Oryza sativa ssp. japonica HOM05D004214 ORTHO05D004963 6.1e-34 149.1 163 48.5
FAN05G5298 Fragaria x ananassa HOM05D004214 ORTHO05D004963 1.4e-33 147.9 194 39.2
FvH4_6g48001 Fragaria vesca HOM05D004214 ORTHO05D004963 2.0e-32 144.1 191 39.3
TPR.G8805 Trifolium pratense HOM05D004214 ORTHO05D004963 2.0e-32 144.1 196 37.2
RcHm_v2.0_Chr2g0167251 Rosa chinensis HOM05D004214 ORTHO05D004963 4.4e-32 142.9 171 39.8
Ca_04848_v3 Cicer arietinum L. HOM05D004214 ORTHO05D004963 7.5e-32 142.1 199 37.7
FAN14G3700 Fragaria x ananassa HOM05D004214 ORTHO05D004963 2.8e-31 140.2 191 38.7
FvH4_6g48000 Fragaria vesca HOM05D004214 ORTHO05D004963 6.3e-31 139.0 148 43.9
RcHm_v2.0_Chr2g0167291 Rosa chinensis HOM05D004214 ORTHO05D004963 2.4e-30 137.1 191 36.6
Phvul.004G029700 Phaseolus vulgaris HOM05D004214 ORTHO05D004963 4.1e-30 136.3 196 36.2
FAN09G1794 Fragaria x ananassa HOM05D004214 ORTHO05D004963 5.4e-30 136.0 193 37.8
FAN14G4990 Fragaria x ananassa HOM05D004214 ORTHO05D004963 5.9e-29 132.5 211 34.6
RcHm_v2.0_Chr2g0167241 Rosa chinensis HOM05D004214 ORTHO05D004963 2.2e-28 130.6 208 35.6
CBR_g51334 Chara braunii HOM05D004214 ORTHO05D004963 4.2e-27 126.3 173 38.7
Gohir.D11G074550 Gossypium hirsutum HOM05D004214 ORTHO05D004963 1.6e-26 124.4 102 56.9
Gorai.007G080000 Gossypium raimondii HOM05D004214 ORTHO05D004963 2.1e-26 124.0 102 56.9
arahy.Tifrunner.gnm1.ann1.SU00NT Arachis hypogaea HOM05D004214 ORTHO05D004963 8.0e-26 122.1 190 35.3
FAN02G2928 Fragaria x ananassa HOM05D004214 ORTHO05D004963 2.0e-24 117.5 157 38.9
Nitab4.5_0001591g0160 Nicotiana tabacum HOM05D004214 ORTHO05D004963 1.7e-23 114.4 192 34.4
ClCG10G015310 Citrullus lanatus HOM05D004214 ORTHO05D004963 2.8e-23 113.6 205 31.7
Aa31LG9G16510 Aethionema arabicum HOM05D004214 ORTHO05D004963 4.1e-22 109.8 76 71.1
BolC9t55376H Brassica oleracea HOM05D004214 ORTHO05D004963 6.6e-20 102.4 85 56.5
Glyma.13G061800 Glycine max HOM05D004214 ORTHO05D004963 3.3e-19 100.1 100 44.0
MD09G1055400 Malus domestica HOM05D004214 ORTHO05D004963 9.5e-19 98.6 115 39.1
C06p18570 Brassica napus HOM05D004214 ORTHO05D004963 9.8e-16 88.6 79 59.5
BraA07t29702Z Brassica rapa HOM05D004214 ORTHO05D004963 6.4e-15 85.9 74 63.5
Lj3A364T22 Lonicera japonica HOM05D004214 ORTHO05D004963 3.2e-14 83.6 74 50.0
PRCOL_00004285 Prasinoderma coloniale HOM05D004214 ORTHO05D004963 4.1e-14 83.2 171 28.1
Lj3A350G16 Lonicera japonica HOM05D004214 ORTHO05D004963 2.0e-13 80.9 88 50.0
CsaV3_3G041190 Cucumis sativus L. HOM05D004214 ORTHO05D004963 3.5e-13 80.1 189 27.0
MELO3C009848.2 Cucumis melo HOM05D004214 ORTHO05D004963 1.5e-11 74.7 294 23.8
BolC6t37070H Brassica oleracea HOM05D004214 ORTHO05D004963 9.5e-11 72.0 66 56.1
CBR_g46605 Chara braunii HOM05D004214 ORTHO05D004963 2.8e-10 70.5 121 34.7
Pp3c1_32760 Physcomitrium patens HOM05D019249 ORTHO05D019657 1.0e-09 68.6 203 24.1
Sabra17G0077200 Salix brachista HOM05D004214 ORTHO05D004963 3.1e-09 67.0 57 57.9
AagrBONN_evm.TU.Sc2ySwM_362.234 Anthoceros agrestis HOM05D019249 ORTHO05D019657 2.0e-08 64.3 221 26.7


User provided reference genes

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