Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB06g27319 Brassica carinata HOM05D004214 ORTHO05D004963 6.5e-114 414.1 210 100.0
A04p12270 Brassica napus HOM05D004214 ORTHO05D004963 5.5e-105 384.4 236 85.2
BraA04t16891Z Brassica rapa HOM05D004214 ORTHO05D004963 5.2e-103 377.9 236 83.5
C04p45950 Brassica napus HOM05D004214 ORTHO05D004963 5.0e-90 334.7 210 84.8
BraA04t16892Z Brassica rapa HOM05D004214 ORTHO05D004963 5.0e-90 334.7 236 75.0
BcaB06g27320 Brassica carinata HOM05D004214 ORTHO05D004963 1.5e-89 333.2 236 74.6
C04p45960 Brassica napus HOM05D004214 ORTHO05D004963 1.9e-89 332.8 236 74.6
BolC4t26179H Brassica oleracea HOM05D004214 ORTHO05D004963 1.9e-89 332.8 236 74.6
A04p12280 Brassica napus HOM05D004214 ORTHO05D004963 1.6e-88 329.7 236 74.2
Thhalv10028063m.g Eutrema salsugineum HOM05D004214 ORTHO05D004963 4.4e-86 321.6 231 73.6
BcaB06g27340 Brassica carinata HOM05D004214 ORTHO05D004963 4.9e-85 318.2 227 73.1
Sp7g02440 Schrenkiella parvula HOM05D004214 ORTHO05D004963 1.5e-81 306.6 236 69.5
CARHR262810 Cardamine hirsuta HOM05D004214 ORTHO05D004963 2.1e-75 286.2 238 67.6
AL7G50790 Arabidopsis lyrata HOM05D004214 ORTHO05D004963 2.7e-75 285.8 236 65.7
AT5G39520 Arabidopsis thaliana HOM05D004214 ORTHO05D004963 3.0e-74 282.3 234 64.5
Carub.0007s3643 Capsella rubella HOM05D004214 ORTHO05D004963 1.8e-71 273.1 237 64.6
Thhalv10027904m.g Eutrema salsugineum HOM05D004214 ORTHO05D004963 3.1e-71 272.3 211 66.4
C04p45970 Brassica napus HOM05D004214 ORTHO05D004963 6.8e-71 271.2 229 62.4
BolC4t26180H Brassica oleracea HOM05D004214 ORTHO05D004963 6.8e-71 271.2 229 62.4
BraA04t16893Z Brassica rapa HOM05D004214 ORTHO05D004963 6.8e-71 271.2 229 62.0
A04p12290 Brassica napus HOM05D004214 ORTHO05D004963 2.0e-70 269.6 229 61.6
CARHR262760 Cardamine hirsuta HOM05D004214 ORTHO05D004963 3.4e-70 268.9 234 63.2
BcaB06g27341 Brassica carinata HOM05D004214 ORTHO05D004963 4.4e-70 268.5 229 62.0
AL7G50770 Arabidopsis lyrata HOM05D004214 ORTHO05D004963 9.9e-70 267.3 233 61.4
Sp7g02430 Schrenkiella parvula HOM05D004214 ORTHO05D004963 9.9e-70 267.3 221 61.5
Carub.0007s3642 Capsella rubella HOM05D004214 ORTHO05D004963 3.5e-67 258.8 239 59.8
THA.LOC104805483 Tarenaya hassleriana HOM05D004214 ORTHO05D004963 4.9e-61 238.4 210 60.0
BolC4t26178H Brassica oleracea HOM05D004214 ORTHO05D004963 2.1e-59 233.0 118 99.2
AT5G39530 Arabidopsis thaliana HOM05D004214 ORTHO05D004963 5.6e-57 224.9 205 59.0
CARHR262800 Cardamine hirsuta HOM05D004214 ORTHO05D004963 4.8e-56 221.9 177 63.8
TWI60G1366 Tripterygium wilfordii HOM05D004214 ORTHO05D004963 5.3e-55 218.4 195 58.5
Manes.02G048700 Manihot esculenta HOM05D004214 ORTHO05D004963 1.7e-53 213.4 211 56.4
Dinv11505 Davidia involucrata HOM05D004214 ORTHO05D004963 6.4e-53 211.5 198 55.1
GSVIVG01011460001 Vitis vinifera HOM05D004214 ORTHO05D004963 5.4e-52 208.4 193 55.4
Actinidia06102 Actinidia chinensis HOM05D004214 ORTHO05D004963 1.6e-51 206.8 194 53.6
Atru.chr8.322 Acer truncatum HOM05D004214 ORTHO05D004963 2.1e-51 206.5 193 54.9
MSTRG.23916 Avicennia marina HOM05D004214 ORTHO05D004963 7.8e-51 204.5 192 53.6
Migut.H00677 Erythranthe guttata HOM05D004214 ORTHO05D004963 7.8e-51 204.5 204 50.0
HanXRQChr15g0487741 Helianthus annuus HOM05D004214 ORTHO05D004963 7.8e-51 204.5 199 52.8
Oeu010226.1 Olea europaea HOM05D004214 ORTHO05D004963 7.8e-51 204.5 194 53.1
Oeu010227.1 Olea europaea HOM05D004214 ORTHO05D004963 7.8e-51 204.5 194 53.1
EL10Ac2g03019 Beta vulgaris HOM05D004214 ORTHO05D004963 3.9e-50 202.2 201 51.2
Sc10g0003430 Simmondsia chinensis HOM05D004214 ORTHO05D004963 3.9e-50 202.2 195 54.9
Potri.017G087500 Populus trichocarpa HOM05D004214 ORTHO05D004963 5.1e-50 201.8 188 55.9
TWI34G0797 Tripterygium wilfordii HOM05D004214 ORTHO05D004963 6.6e-50 201.4 195 54.9
TWI34G1333 Tripterygium wilfordii HOM05D004214 ORTHO05D004963 6.6e-50 201.4 195 54.9
CSS0015906 Camellia sinensis var. sinensis HOM05D004214 ORTHO05D004963 8.7e-50 201.1 193 52.3
CSS0019671 Camellia sinensis var. sinensis HOM05D004214 ORTHO05D004963 8.7e-50 201.1 193 52.3
Eucgr.I02016 Eucalyptus grandis HOM05D004214 ORTHO05D004963 8.7e-50 201.1 191 53.9
Lsat_1_v5_gn_4_169740 Lactuca sativa HOM05D004214 ORTHO05D004963 8.7e-50 201.1 200 51.0
SalBow1G5883 Salvia bowleyana HOM05D004214 ORTHO05D004963 8.7e-50 201.1 213 49.8
Cpa.g.sc14.113 Carica papaya HOM05D004214 ORTHO05D004963 1.1e-49 200.7 240 46.2
Ciclev10012515m.g Citrus clementina HOM05D004214 ORTHO05D004963 5.6e-49 198.4 193 52.8
TAR629G3302 Trochodendron aralioides HOM05D004214 ORTHO05D004963 1.6e-48 196.8 205 51.7
ECA232G2753 Erigeron canadensis HOM05D004214 ORTHO05D005214 2.1e-48 196.4 195 51.3
Hma1.2p1_0409F.1_g146710 Hydrangea macrophylla HOM05D004214 ORTHO05D004963 2.1e-48 196.4 192 51.0
Solyc02g067120.4 Solanum lycopersicum HOM05D004214 ORTHO05D004963 3.6e-48 195.7 192 51.0
Sopen02g016310 Solanum pennellii HOM05D004214 ORTHO05D004963 3.6e-48 195.7 192 51.0
Thecc.04G087300 Theobroma cacao HOM05D004214 ORTHO05D004963 1.4e-47 193.7 195 50.8
Cc07_g03630 Coffea canephora HOM05D004214 ORTHO05D004963 3.1e-47 192.6 192 50.0
CSS0036969 Camellia sinensis var. sinensis HOM05D004214 ORTHO05D004963 9.0e-47 191.0 193 51.8
Duzib147G0992 Durio zibethinus HOM05D004214 ORTHO05D004963 1.2e-46 190.7 195 49.7
PGSC0003DMG400025136 Solanum tuberosum HOM05D004214 ORTHO05D004963 5.8e-46 188.3 216 47.2
Rhsim10G0035800 Rhododendron simsii HOM05D004214 ORTHO05D004963 1.3e-45 187.2 194 50.0
Lj3A346G23 Lonicera japonica HOM05D004214 ORTHO05D004963 1.1e-44 184.1 197 46.7
Gorai.001G240700 Gossypium raimondii HOM05D004214 ORTHO05D004963 1.4e-44 183.7 189 48.7
unitig_62.g23442 Utricularia gibba HOM05D004214 ORTHO05D004963 9.3e-44 181.0 203 48.3
DCAR_011079 Daucus carota HOM05D004214 ORTHO05D004963 1.0e-42 177.6 190 48.9
Rhsim10G0035900 Rhododendron simsii HOM05D004214 ORTHO05D004963 1.0e-42 177.6 206 44.7
AUR62018111 Chenopodium quinoa HOM05D004214 ORTHO05D004963 2.3e-42 176.4 201 45.3
Nitab4.5_0010283g0010 Nicotiana tabacum HOM05D004214 ORTHO05D004963 6.7e-42 174.9 192 49.0
Hund15587 Selenicereus undatus HOM05D004214 ORTHO05D004963 1.1e-41 174.1 230 42.2
COL.COLO4_12225 Corchorus olitorius HOM05D004214 ORTHO05D004963 1.5e-41 173.7 174 50.6
ATR0564G445 Amborella trichopoda HOM05D004214 ORTHO05D004963 1.3e-40 170.6 209 44.5
Peaxi162Scf00166g01050 Petunia axillaris HOM05D004214 ORTHO05D004963 1.8e-39 166.8 169 48.5
PSO017G4463 Papaver somniferum HOM05D004214 ORTHO05D004963 2.0e-38 163.3 196 45.4
PSO478G0939 Papaver somniferum HOM05D004214 ORTHO05D004963 2.0e-38 163.3 196 45.4
CAN.G979.5 Capsicum annuum HOM05D004214 ORTHO05D004963 5.8e-38 161.8 184 47.3
SEGI_32476 Sequoiadendron giganteum HOM05D004214 ORTHO05D004963 7.6e-38 161.4 204 40.7
CDE02G0918 Ceratophyllum demersum HOM05D004214 ORTHO05D004963 1.3e-37 160.6 216 41.2
Solyc02g088270.3 Solanum lycopersicum HOM05D004214 ORTHO05D004963 2.9e-37 159.5 182 47.3
AUR62034445 Chenopodium quinoa HOM05D004214 ORTHO05D004963 3.8e-37 159.1 168 48.2
QL02p084825 Quercus lobata HOM05D004214 ORTHO05D004963 3.8e-37 159.1 198 42.4
Sopen02g032950 Solanum pennellii HOM05D004214 ORTHO05D004963 6.5e-37 158.3 182 47.8
PGSC0003DMG402001341 Solanum tuberosum HOM05D004214 ORTHO05D004963 4.2e-36 155.6 184 47.3
Nitab4.5_0000568g0170 Nicotiana tabacum HOM05D004214 ORTHO05D004963 5.5e-36 155.2 240 40.4
CAN.G206.176 Capsicum annuum HOM05D004214 ORTHO05D004963 2.1e-35 153.3 182 44.5
PGSC0003DMG401001341 Solanum tuberosum HOM05D004214 ORTHO05D004963 7.9e-35 151.4 246 42.7
QL02p084872 Quercus lobata HOM05D004214 ORTHO05D004963 1.0e-34 151.0 241 36.9
SGA_v2.0_scaffold413G51175 Striga asiatica HOM05D004214 ORTHO05D004963 3.3e-33 146.0 191 42.9
Nn4g23269 Nelumbo nucifera HOM05D004214 ORTHO05D004963 1.6e-32 143.7 145 51.0
Gohir.D07G212700 Gossypium hirsutum HOM05D004214 ORTHO05D004963 6.9e-31 138.3 157 44.6
Ca_04853_v3 Cicer arietinum L. HOM05D004214 ORTHO05D004963 9.0e-31 137.9 201 36.3
Peaxi162Scf00629g00121 Petunia axillaris HOM05D004214 ORTHO05D004963 2.6e-30 136.3 195 42.1
Zm00001eb328430 Zea mays HOM05D004214 ORTHO05D004963 1.0e-29 134.4 176 44.9
arahy.Tifrunner.gnm1.ann1.55PBKN Arachis hypogaea HOM05D004214 ORTHO05D004963 1.3e-29 134.0 200 36.0
PGR004G0346 Punica granatum HOM05D004214 ORTHO05D004963 1.7e-29 133.7 177 41.8
Lj3A369T15 Lonicera japonica HOM05D004214 ORTHO05D004963 2.9e-29 132.9 145 44.8
Lj2g0002943 Lotus japonicus HOM05D004214 ORTHO05D004963 3.8e-29 132.5 206 34.0
TPR.G14395 Trifolium pratense HOM05D004214 ORTHO05D004963 5.0e-29 132.1 200 35.0
arahy.Tifrunner.gnm1.ann1.7SZ544 Arachis hypogaea HOM05D004214 ORTHO05D004963 8.4e-29 131.3 200 35.5
Mapoly0033s0115 Marchantia polymorpha HOM05D004214 ORTHO05D004963 8.4e-29 131.3 193 33.2
Lj8A426T27 Lonicera japonica HOM05D004214 ORTHO05D004963 2.5e-28 129.8 144 44.4
PGR083G1063 Punica granatum HOM05D004214 ORTHO05D004963 2.5e-28 129.8 199 39.2
Lj3A367T10 Lonicera japonica HOM05D004214 ORTHO05D004963 3.2e-28 129.4 192 38.5
Lj8A428G27 Lonicera japonica HOM05D004214 ORTHO05D004963 9.3e-28 127.9 197 37.6
Lalb_Chr06g0175181 Lupinus albus HOM05D004214 ORTHO05D004963 9.3e-28 127.9 196 35.2
Glyma.13G060852 Glycine max HOM05D004214 ORTHO05D004963 1.2e-27 127.5 210 34.8
TPR.G26214 Trifolium pratense HOM05D004214 ORTHO05D004963 7.9e-27 124.8 200 32.0
Lj2g0016815 Lotus japonicus HOM05D004214 ORTHO05D004963 1.0e-26 124.4 198 34.8
Os07g0633000 Oryza sativa ssp. japonica HOM05D004214 ORTHO05D004963 1.3e-26 124.0 156 44.2
Medtr6g012830 Medicago truncatula HOM05D004214 ORTHO05D004963 2.3e-26 123.2 191 34.6
Zm00001eb402430 Zea mays HOM05D004214 ORTHO05D004963 2.3e-26 123.2 192 35.4
CBR_g51334 Chara braunii HOM05D004214 ORTHO05D004963 6.7e-26 121.7 210 34.8
Os03g0168300 Oryza sativa ssp. japonica HOM05D004214 ORTHO05D004963 6.7e-26 121.7 206 35.4
QL02p084854 Quercus lobata HOM05D004214 ORTHO05D004963 8.7e-26 121.3 194 37.6
Lj4P113T24 Lonicera japonica HOM05D004214 ORTHO05D004963 1.9e-25 120.2 138 44.9
MD09G1055000 Malus domestica HOM05D004214 ORTHO05D004963 1.9e-25 120.2 200 32.0
Glyma.19G025600 Glycine max HOM05D004214 ORTHO05D004963 2.5e-25 119.8 210 34.3
Phvul.004G031400 Phaseolus vulgaris HOM05D004214 ORTHO05D004963 1.3e-24 117.5 199 33.2
Nitab4.5_0000212g0090 Nicotiana tabacum HOM05D004214 ORTHO05D004963 2.2e-24 116.7 192 37.5
Nitab4.5_0001591g0160 Nicotiana tabacum HOM05D004214 ORTHO05D004963 2.2e-24 116.7 201 34.3
CsaV3_5G038250 Cucumis sativus L. HOM05D004214 ORTHO05D004963 4.8e-24 115.5 189 33.9
Lj3A352G14 Lonicera japonica HOM05D004214 ORTHO05D004963 6.3e-24 115.2 138 42.0
VMungo0464G0566 Vigna mungo HOM05D004214 ORTHO05D004963 6.3e-24 115.2 196 34.2
Psat1g070480 Pisum sativum HOM05D004214 ORTHO05D004963 8.2e-24 114.8 159 37.7
Prupe.3G263500 Prunus persica HOM05D004214 ORTHO05D004963 8.2e-24 114.8 192 34.4
arahy.Tifrunner.gnm1.ann1.SU00NT Arachis hypogaea HOM05D004214 ORTHO05D004963 1.8e-23 113.6 168 39.3
MELO3C033594.2 Cucumis melo HOM05D004214 ORTHO05D004963 4.1e-23 112.5 185 35.1
ClCG09G017980 Citrullus lanatus HOM05D004214 ORTHO05D004963 1.2e-22 110.9 190 35.3
Ca_04848_v3 Cicer arietinum L. HOM05D004214 ORTHO05D004963 4.5e-22 109.0 189 33.3
ClCG10G015310 Citrullus lanatus HOM05D004214 ORTHO05D004963 1.3e-21 107.5 190 32.1
Gohir.A07G206700 Gossypium hirsutum HOM05D004214 ORTHO05D004963 2.2e-21 106.7 76 61.8
Lj2g0019349 Lotus japonicus HOM05D004214 ORTHO05D004963 2.2e-21 106.7 181 30.9
Psat1g071840 Pisum sativum HOM05D004214 ORTHO05D004963 8.5e-21 104.8 189 31.7
Phvul.004G029700 Phaseolus vulgaris HOM05D004214 ORTHO05D004963 4.2e-20 102.4 227 29.5
FAN05G5298 Fragaria x ananassa HOM05D004214 ORTHO05D004963 9.4e-20 101.3 194 33.0
Aa31LG9G16510 Aethionema arabicum HOM05D004214 ORTHO05D004963 3.6e-19 99.4 76 65.8
FvH4_6g48001 Fragaria vesca HOM05D004214 ORTHO05D004963 1.4e-18 97.4 195 31.8
Lj2g0001860 Lotus japonicus HOM05D004214 ORTHO05D004963 2.3e-18 96.7 141 36.9
TPR.G8805 Trifolium pratense HOM05D004214 ORTHO05D004963 3.9e-18 95.9 197 29.4
C06p18570 Brassica napus HOM05D004214 ORTHO05D004963 6.7e-18 95.1 86 58.1
FAN14G3700 Fragaria x ananassa HOM05D004214 ORTHO05D004963 2.0e-17 93.6 195 31.3
BolC9t55376H Brassica oleracea HOM05D004214 ORTHO05D004963 2.5e-17 93.2 85 55.3
FAN09G1794 Fragaria x ananassa HOM05D004214 ORTHO05D004963 3.3e-17 92.8 197 30.5
RcHm_v2.0_Chr2g0167251 Rosa chinensis HOM05D004214 ORTHO05D004963 5.7e-17 92.0 168 32.7
Gohir.D11G074550 Gossypium hirsutum HOM05D004214 ORTHO05D004963 9.7e-17 91.3 79 53.2
Gorai.007G080000 Gossypium raimondii HOM05D004214 ORTHO05D004963 1.3e-16 90.9 79 53.2
CsaV3_3G041190 Cucumis sativus L. HOM05D004214 ORTHO05D004963 2.2e-16 90.1 166 30.7
RcHm_v2.0_Chr2g0167291 Rosa chinensis HOM05D004214 ORTHO05D004963 2.2e-16 90.1 196 30.1
FvH4_6g48000 Fragaria vesca HOM05D004214 ORTHO05D004963 4.1e-15 85.9 194 30.4
FAN14G4990 Fragaria x ananassa HOM05D004214 ORTHO05D004963 5.3e-15 85.5 211 28.9
RcHm_v2.0_Chr2g0167241 Rosa chinensis HOM05D004214 ORTHO05D004963 4.5e-14 82.4 193 29.5
Glyma.13G061800 Glycine max HOM05D004214 ORTHO05D004963 1.3e-13 80.9 102 40.2
MELO3C009848.2 Cucumis melo HOM05D004214 ORTHO05D004963 2.2e-13 80.1 142 32.4
BraA07t29702Z Brassica rapa HOM05D004214 ORTHO05D004963 1.1e-12 77.8 74 58.1
Pp3c1_32760 Physcomitrium patens HOM05D019249 ORTHO05D019657 3.9e-10 69.3 169 25.4
Lj3A364T22 Lonicera japonica HOM05D004214 ORTHO05D004963 5.1e-10 68.9 67 46.3
PRCOL_00004285 Prasinoderma coloniale HOM05D004214 ORTHO05D004963 1.1e-09 67.8 166 23.5
CBR_g46605 Chara braunii HOM05D004214 ORTHO05D004963 5.7e-09 65.5 121 32.2
BolC6t37070H Brassica oleracea HOM05D004214 ORTHO05D004963 7.4e-09 65.1 66 51.5
Sabra17G0077200 Salix brachista HOM05D004214 ORTHO05D004963 9.7e-09 64.7 45 66.7
FAN02G2928 Fragaria x ananassa HOM05D004214 ORTHO05D004963 1.3e-08 64.3 157 29.3
Lj3A350G16 Lonicera japonica HOM05D004214 ORTHO05D004963 7.0e-07 58.5 41 63.4
MD09G1055400 Malus domestica HOM05D004214 ORTHO05D004963 4.5e-06 55.8 114 28.9


User provided reference genes

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