Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB06g27240 Brassica carinata HOM05D007347 ORTHO05D009296 3.3e-155 552.7 595 100.0
BcaC02g09666 Brassica carinata HOM05D007347 ORTHO05D009296 9.2e-97 358.6 340 93.5
C04p45350 Brassica napus HOM05D007347 ORTHO05D009296 9.2e-97 358.6 340 93.5
BolC4t26117H Brassica oleracea HOM05D007347 ORTHO05D009296 9.2e-97 358.6 340 93.5
BraA04t16830Z Brassica rapa HOM05D007347 ORTHO05D009296 9.2e-97 358.6 340 94.7
A04p11620 Brassica napus HOM05D007347 ORTHO05D009296 1.0e-95 355.1 340 94.1
SpUn0124_0020 Schrenkiella parvula HOM05D007347 ORTHO05D009296 1.7e-90 337.8 343 90.1
SpUn0185_0030 Schrenkiella parvula HOM05D007347 ORTHO05D009296 1.7e-90 337.8 343 90.1
Thhalv10028323m.g Eutrema salsugineum HOM05D007347 ORTHO05D009296 1.1e-89 335.1 343 88.0
AL7G51690 Arabidopsis lyrata HOM05D007347 ORTHO05D009296 5.1e-87 326.2 343 86.9
AT5G38730 Arabidopsis thaliana HOM05D007347 ORTHO05D009296 6.6e-87 325.9 598 79.4
Carub.0007s3713 Capsella rubella HOM05D007347 ORTHO05D009296 1.6e-85 321.2 343 87.8
Aa31LG9G16920 Aethionema arabicum HOM05D007347 ORTHO05D009296 4.7e-85 319.7 598 80.9
THA.LOC104805542 Tarenaya hassleriana HOM05D007347 ORTHO05D009296 1.1e-70 271.9 189 72.5
SGA_v2.0_scaffold204G41666 Striga asiatica HOM05D007347 ORTHO05D009296 3.5e-56 223.8 590 67.1
Prupe.6G186200 Prunus persica HOM05D007347 ORTHO05D009296 4.3e-54 216.9 586 70.0
MELO3C026797.2 Cucumis melo HOM05D007347 ORTHO05D009296 1.3e-50 205.3 580 64.7
Migut.H00560 Erythranthe guttata HOM05D007347 ORTHO05D009296 1.3e-50 205.3 590 65.6
CsaV3_5G013240 Cucumis sativus L. HOM05D007347 ORTHO05D009296 5.0e-50 203.4 580 64.3
MD15G1324700 Malus domestica HOM05D007347 ORTHO05D009296 5.0e-50 203.4 586 68.9
Psat4g145840 Pisum sativum HOM05D007347 ORTHO05D009296 5.0e-50 203.4 574 70.0
Eucgr.I02100 Eucalyptus grandis HOM05D007347 ORTHO05D009296 5.5e-49 199.9 581 69.2
Peaxi162Scf00004g02628 Petunia axillaris HOM05D007347 ORTHO05D009296 9.3e-49 199.1 574 66.4
Sed0006376 Sechium edule HOM05D007347 ORTHO05D009296 4.6e-48 196.8 583 63.8
CAN.G71.18 Capsicum annuum HOM05D007347 ORTHO05D009296 6.7e-47 193.0 594 66.2
CSS0000287 Camellia sinensis var. sinensis HOM05D007347 ORTHO05D009296 1.1e-46 192.2 585 71.5
CSS0049471 Camellia sinensis var. sinensis HOM05D007347 ORTHO05D009296 1.1e-46 192.2 585 71.5
Sopen04g021380 Solanum pennellii HOM05D007347 ORTHO05D009296 1.9e-46 191.4 584 65.6
Solyc04g050550.3 Solanum lycopersicum HOM05D007347 ORTHO05D009296 5.7e-46 189.9 584 66.1
Cc07_g04830 Coffea canephora HOM05D007347 ORTHO05D009296 3.7e-45 187.2 186 49.5
FAN23G0923 Fragaria x ananassa HOM05D007347 ORTHO05D009296 1.4e-44 185.3 178 55.1
FAN26G2104 Fragaria x ananassa HOM05D007347 ORTHO05D009296 1.4e-44 185.3 178 55.1
QL06p007153 Quercus lobata HOM05D007347 ORTHO05D009296 1.8e-44 184.9 189 50.8
RcHm_v2.0_Chr2g0114451 Rosa chinensis HOM05D007347 ORTHO05D009296 1.8e-44 184.9 178 54.5
FvH4_1g20970 Fragaria vesca HOM05D007347 ORTHO05D009296 2.4e-44 184.5 178 54.5
FAN23G0930 Fragaria x ananassa HOM05D007347 ORTHO05D009296 3.1e-44 184.1 178 54.5
Glyma.15G236300 Glycine max HOM05D007347 ORTHO05D009296 5.3e-44 183.3 591 69.5
Medtr8g039270 Medicago truncatula HOM05D007347 ORTHO05D009296 5.3e-44 183.3 186 50.0
Cpa.g.sc16.131 Carica papaya HOM05D007347 ORTHO05D009296 1.5e-43 181.8 176 52.3
FAN19G1358 Fragaria x ananassa HOM05D007347 ORTHO05D009296 2.6e-43 181.0 178 53.9
RcHm_v2.0_Chr6g0269561 Rosa chinensis HOM05D007347 ORTHO05D009296 2.6e-43 181.0 178 53.4
Lsat_1_v5_gn_2_86161 Lactuca sativa HOM05D007347 ORTHO05D009296 3.4e-43 180.6 188 51.1
TPR.G30433 Trifolium pratense HOM05D007347 ORTHO05D009296 1.0e-42 179.1 171 50.3
Potri.017G108600 Populus trichocarpa HOM05D007347 ORTHO05D009296 1.7e-42 178.3 185 50.3
ClCG11G001180 Citrullus lanatus HOM05D007347 ORTHO05D009296 3.8e-42 177.2 188 49.5
MSTRG.24902 Avicennia marina HOM05D007347 ORTHO05D009296 1.1e-41 175.6 580 68.4
HanXRQChr14g0448021 Helianthus annuus HOM05D007347 ORTHO05D009296 1.4e-41 175.3 188 50.5
Lj4P128T51 Lonicera japonica HOM05D007347 ORTHO05D009296 3.2e-41 174.1 182 48.4
TWI15G0869 Tripterygium wilfordii HOM05D007347 ORTHO05D009296 4.2e-41 173.7 185 50.8
CiPaw.03G007800 Carya illinoinensis HOM05D007347 ORTHO05D009296 5.5e-41 173.3 188 48.4
Nitab4.5_0007154g0010 Nicotiana tabacum HOM05D007347 ORTHO05D009296 7.2e-41 172.9 188 48.4
Dinv34879 Davidia involucrata HOM05D007347 ORTHO05D009296 1.6e-40 171.8 186 50.0
Lj3g0007423 Lotus japonicus HOM05D007347 ORTHO05D009296 2.1e-40 171.4 171 52.6
Duzib138G0808 Durio zibethinus HOM05D007347 ORTHO05D009296 4.6e-40 170.2 178 52.8
Lalb_Chr19g0132391 Lupinus albus HOM05D007347 ORTHO05D009296 6.1e-40 169.9 172 51.7
Sabra17G0091200 Salix brachista HOM05D007347 ORTHO05D009296 2.3e-39 167.9 182 48.4
Actinidia18106 Actinidia chinensis HOM05D007347 ORTHO05D009296 5.1e-39 166.8 186 47.8
SalBow1G8225 Salvia bowleyana HOM05D007347 ORTHO05D009296 5.1e-39 166.8 180 48.3
CANSAT64G0714 Cannabis sativa HOM05D007347 ORTHO05D009296 8.8e-39 166.0 189 46.0
Gorai.005G232200 Gossypium raimondii HOM05D007347 ORTHO05D009296 2.0e-38 164.9 178 51.1
Cfa007995 Carpinus fangiana HOM05D007347 ORTHO05D009296 2.6e-38 164.5 170 51.2
Thecc.04G145700 Theobroma cacao HOM05D007347 ORTHO05D009296 2.6e-38 164.5 187 49.7
Gohir.D02G204900 Gossypium hirsutum HOM05D007347 ORTHO05D009296 5.7e-38 163.3 178 50.6
Glyma.13G197700 Glycine max HOM05D007347 ORTHO05D009296 1.7e-37 161.8 187 48.1
Haze_14081 Corylus avellana HOM05D007347 ORTHO05D009296 2.2e-37 161.4 181 48.6
Hma1.2p1_1364F.1_g278380 Hydrangea macrophylla HOM05D007347 ORTHO05D009296 2.2e-37 161.4 183 47.5
Gohir.A03G183300 Gossypium hirsutum HOM05D007347 ORTHO05D009296 1.1e-36 159.1 178 50.0
VMungo1127G1072 Vigna mungo HOM05D007347 ORTHO05D009296 1.1e-36 159.1 164 51.2
Ciclev10011342m.g Citrus clementina HOM05D007347 ORTHO05D009296 1.4e-36 158.7 184 44.0
Phvul.011G207300 Phaseolus vulgaris HOM05D007347 ORTHO05D009296 2.0e-35 154.8 164 50.0
COL.COLO4_23655 Corchorus olitorius HOM05D007347 ORTHO05D009296 4.5e-35 153.7 511 71.4
GSVIVG01036486001 Vitis vinifera HOM05D007347 ORTHO05D009296 1.0e-34 152.5 168 47.6
PSO782G5207 Papaver somniferum HOM05D007347 ORTHO05D009296 6.5e-34 149.8 177 42.4
Nn3g18549 Nelumbo nucifera HOM05D007347 ORTHO05D009296 1.4e-33 148.7 181 43.1
Manes.18G103700 Manihot esculenta HOM05D007347 ORTHO05D009296 1.9e-33 148.3 167 47.3
AUR62019500 Chenopodium quinoa HOM05D007347 ORTHO05D009296 5.5e-33 146.7 189 43.9
TAR371G0226 Trochodendron aralioides HOM05D007347 ORTHO05D009296 7.2e-33 146.4 186 39.2
TAR629G3514 Trochodendron aralioides HOM05D007347 ORTHO05D009296 7.2e-33 146.4 186 39.2
Ah.16g102100 Amaranthus hybridus HOM05D007347 ORTHO05D009296 6.1e-32 143.3 186 41.4
MBI03_g44527_MAGBIO Magnolia biondii HOM05D007347 ORTHO05D009296 7.9e-32 142.9 181 42.0
CARHR264050 Cardamine hirsuta HOM05D007347 ORTHO05D009296 5.2e-31 140.2 69 95.7
Sc10g0001490 Simmondsia chinensis HOM05D007347 ORTHO05D009296 1.5e-30 138.7 186 40.3
Atru.chr10.1870 Acer truncatum HOM05D007347 ORTHO05D009296 2.6e-30 137.9 591 64.8
ATR0124G035 Amborella trichopoda HOM05D007347 ORTHO05D009296 9.7e-30 136.0 186 40.9
FAN28G0832 Fragaria x ananassa HOM05D007347 ORTHO05D009296 4.8e-29 133.7 158 47.5
COL.COLO4_37044 Corchorus olitorius HOM05D007347 ORTHO05D009296 8.2e-29 132.9 111 57.7
SHI25538 Sapria himalayana HOM05D002460 ORTHO05D002716 1.1e-28 132.5 170 45.3
Manes.02G063016 Manihot esculenta HOM05D002460 ORTHO05D002716 1.4e-28 132.1 169 44.4
ECA238G4434 Erigeron canadensis HOM05D007347 ORTHO05D009296 3.1e-28 131.0 104 61.5
Aqoxy3G04330 Aquilegia oxysepala HOM05D007347 ORTHO05D009296 9.1e-28 129.4 177 40.7
SGA_v2.0_scaffold4G02364 Striga asiatica HOM05D007347 ORTHO05D009296 5.9e-19 100.1 101 51.5
AUR62036136 Chenopodium quinoa HOM05D007347 ORTHO05D009296 7.7e-19 99.8 104 48.1
MBI03_g13436_MAGBIO Magnolia biondii HOM05D007347 ORTHO05D009296 1.0e-18 99.4 99 47.5
Ca_23964_v3 Cicer arietinum L. HOM05D007347 ORTHO05D009296 6.5e-18 96.7 84 54.8
DCAR_010986 Daucus carota HOM05D007347 ORTHO05D009296 1.4e-15 89.0 90 44.4
CDE05G1387 Ceratophyllum demersum HOM05D007347 ORTHO05D009296 3.1e-12 77.8 108 35.2
Oeu033427.1 Olea europaea HOM05D007347 ORTHO05D009296 3.1e-12 77.8 64 59.4
Rhsim10G0062500 Rhododendron simsii HOM05D007347 ORTHO05D009296 5.4e-12 77.0 63 61.9
CARHR283670 Cardamine hirsuta HOM05D007347 ORTHO05D009296 5.0e-10 70.5 36 88.9
Zm00001eb259350 Zea mays HOM05D007347 ORTHO05D009296 1.1e-09 69.3 160 34.4
MBI03_g44528_MAGBIO Magnolia biondii HOM05D007347 ORTHO05D009296 8.0e-08 63.2 110 30.9
SGA_v2.0_scaffold204G41677 Striga asiatica HOM05D007347 ORTHO05D009296 8.0e-08 63.2 112 36.6
ATR0124G055 Amborella trichopoda HOM05D007347 ORTHO05D009296 3.0e-07 61.2 87 33.3
Eucgr.E04115 Eucalyptus grandis HOM05D007956 ORTHO05D010152 6.8e-07 60.1 181 24.3
SEGI_31001 Sequoiadendron giganteum HOM05D007358 ORTHO05D009117 1.5e-06 58.9 177 25.4
CiPaw.09G087900 Carya illinoinensis HOM05D007956 ORTHO05D010152 2.6e-06 58.2 177 24.9
Nn5g30586 Nelumbo nucifera HOM05D005287 ORTHO05D006893 3.4e-06 57.8 150 29.3
MBI16_g32951_MAGBIO Magnolia biondii HOM05D000424 ORTHO05D000355 4.4e-06 57.4 166 29.5


User provided reference genes

Program Settings