Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB06g27191 Brassica carinata HOM05D001038 ORTHO05D010946 1.9e-119 432.6 225 100.0
BcaB01g02416 Brassica carinata HOM05D011654 ORTHO05D010946 1.3e-35 154.1 93 95.7
BcaB08g36238 Brassica carinata HOM05D011654 ORTHO05D010946 9.1e-21 104.8 75 81.3
BcaB01g01507 Brassica carinata HOM05D011654 ORTHO05D010946 1.0e-16 91.3 93 55.9
BraA10t45164Z Brassica rapa HOM05D000251 ORTHO05D002506 2.3e-16 90.1 52 75.0
BcaC06g32202 Brassica carinata HOM05D000251 ORTHO05D002506 1.5e-15 87.4 52 73.1
A10p31200 Brassica napus HOM05D000251 ORTHO05D002506 1.5e-15 87.4 52 73.1
C09p71820 Brassica napus HOM05D000251 ORTHO05D002506 1.5e-15 87.4 52 73.1
BolC9t59931H Brassica oleracea HOM05D000251 ORTHO05D002506 1.5e-15 87.4 52 73.1
CARHR208330 Cardamine hirsuta HOM05D000251 ORTHO05D002506 1.5e-15 87.4 52 73.1
Thhalv10012494m.g Eutrema salsugineum HOM05D000251 ORTHO05D002506 1.5e-15 87.4 52 73.1
Sp6g37870 Schrenkiella parvula HOM05D000251 ORTHO05D002506 1.5e-15 87.4 52 73.1
BcaB01g05928 Brassica carinata HOM05D000251 ORTHO05D002506 7.4e-15 85.1 52 71.2
BcaC08g43867 Brassica carinata HOM05D001038 ORTHO05D032356 7.4e-15 85.1 93 47.3
BcaNung04446 Brassica carinata HOM05D000251 ORTHO05D002506 7.4e-15 85.1 52 71.2
A03p01970 Brassica napus HOM05D000251 ORTHO05D002506 7.4e-15 85.1 52 71.2
C03p02330 Brassica napus HOM05D000251 ORTHO05D002506 7.4e-15 85.1 52 71.2
C05p38680 Brassica napus HOM05D001038 ORTHO05D000395 7.4e-15 85.1 63 61.9
C06p12520 Brassica napus HOM05D001038 ORTHO05D032356 7.4e-15 85.1 92 47.8
BolC5t32608H Brassica oleracea HOM05D001038 ORTHO05D000395 7.4e-15 85.1 63 61.9
BolC6t36405H Brassica oleracea HOM05D001038 ORTHO05D032356 7.4e-15 85.1 92 47.8
BraA03t09565Z Brassica rapa HOM05D000251 ORTHO05D002506 7.4e-15 85.1 52 71.2
BolC1t03990H Brassica oleracea HOM05D001038 ORTHO05D000395 9.7e-15 84.7 63 61.9
BolC2t07874H Brassica oleracea HOM05D001038 ORTHO05D010946 1.3e-14 84.3 98 50.0
Aa31LG11G5770 Aethionema arabicum HOM05D000251 ORTHO05D002506 1.7e-14 84.0 52 71.2
BolC3t12784H Brassica oleracea HOM05D000251 ORTHO05D002506 1.7e-14 84.0 52 69.2
C06p26270 Brassica napus HOM05D001038 ORTHO05D017617 4.8e-14 82.4 63 63.5
BolC6t37789H Brassica oleracea HOM05D001038 ORTHO05D039878 1.1e-13 81.3 63 63.5
AL6G14630 Arabidopsis lyrata HOM05D000251 ORTHO05D002506 1.8e-13 80.5 52 67.3
AT5G04930 Arabidopsis thaliana HOM05D000251 ORTHO05D002506 1.8e-13 80.5 52 67.3
BcaB07g33657 Brassica carinata HOM05D000428 ORTHO05D000582 3.1e-13 79.7 65 55.4
BcaC05g28246 Brassica carinata HOM05D001038 ORTHO05D031796 4.1e-13 79.3 92 47.8
Carub.0006s0387 Capsella rubella HOM05D000251 ORTHO05D002506 5.3e-13 79.0 52 65.4
BcaC09g51573 Brassica carinata HOM05D001038 ORTHO05D000395 1.2e-12 77.8 63 60.3
C05p42760 Brassica napus HOM05D001038 ORTHO05D031796 1.6e-12 77.4 91 47.3
BcaC05g27866 Brassica carinata HOM05D001038 ORTHO05D000395 2.0e-12 77.0 55 61.8
BcaB02g11035 Brassica carinata HOM05D001038 ORTHO05D000395 2.6e-12 76.6 65 55.4
BcaB06g28542 Brassica carinata HOM05D001038 ORTHO05D000395 5.9e-12 75.5 61 59.0
BcaB07g31666 Brassica carinata HOM05D001038 ORTHO05D000395 7.7e-12 75.1 93 53.8
THA.LOC104816484 Tarenaya hassleriana HOM05D000251 ORTHO05D002506 1.7e-11 73.9 50 62.0
BcaC05g27501 Brassica carinata HOM05D001038 ORTHO05D032287 2.9e-11 73.2 87 44.8
C09p22250 Brassica napus HOM05D001038 ORTHO05D000395 2.9e-11 73.2 63 57.1
BolC2t11347H Brassica oleracea HOM05D001038 ORTHO05D000395 2.9e-11 73.2 59 55.9
BcaB05g21586 Brassica carinata HOM05D001038 ORTHO05D000395 6.5e-11 72.0 92 41.3
BcaB07g32821 Brassica carinata HOM05D001038 ORTHO05D039878 6.5e-11 72.0 62 56.5
BcaB05g23741 Brassica carinata HOM05D000373 ORTHO05D000395 1.9e-10 70.5 65 49.2
Thhalv10002173m.g Eutrema salsugineum HOM05D001038 ORTHO05D010946 4.2e-10 69.3 66 53.0
BcaC01g05566 Brassica carinata HOM05D023990 ORTHO05D032040 3.6e-09 66.2 68 42.6
BolC2t08169H Brassica oleracea HOM05D001038 ORTHO05D010946 3.6e-09 66.2 65 53.8
PGR142G2313 Punica granatum HOM05D000251 ORTHO05D002506 2.3e-08 63.5 45 62.2
Thhalv10002771m.g Eutrema salsugineum HOM05D001038 ORTHO05D010946 4.0e-08 62.8 46 63.0
Thhalv10009967m.g Eutrema salsugineum HOM05D001038 ORTHO05D010946 5.2e-08 62.4 65 49.2
Gohir.A05G395600 Gossypium hirsutum HOM05D000251 ORTHO05D002506 1.1e-07 61.2 45 64.4
TWI38G0093 Tripterygium wilfordii HOM05D000251 ORTHO05D002506 1.1e-07 61.2 45 62.2
BcaC06g33888 Brassica carinata HOM05D001038 ORTHO05D017617 1.5e-07 60.8 92 41.3
Gohir.D04G019400 Gossypium hirsutum HOM05D000251 ORTHO05D002506 1.5e-07 60.8 45 64.4
Gorai.012G023200 Gossypium raimondii HOM05D000251 ORTHO05D002506 1.5e-07 60.8 45 64.4
Cpa.g.sc54.46 Carica papaya HOM05D000251 ORTHO05D002506 2.0e-07 60.5 53 52.8
Ciclev10014078m.g Citrus clementina HOM05D000251 ORTHO05D002506 2.6e-07 60.1 45 57.8
BcaB08g35558 Brassica carinata HOM05D001038 ORTHO05D000395 3.3e-07 59.7 45 64.4
Duzib114G0038 Durio zibethinus HOM05D000251 ORTHO05D002506 3.3e-07 59.7 45 62.2
Duzib114G0078 Durio zibethinus HOM05D000251 ORTHO05D002506 3.3e-07 59.7 45 62.2
Nn2g14579 Nelumbo nucifera HOM05D000251 ORTHO05D002506 4.4e-07 59.3 45 55.6
BcaB01g02361 Brassica carinata HOM05D001038 ORTHO05D010946 5.7e-07 58.9 46 58.7
BcaB08g34843 Brassica carinata HOM05D001038 ORTHO05D010946 5.7e-07 58.9 65 46.2
A01p24490 Brassica napus HOM05D001038 ORTHO05D021947 5.7e-07 58.9 79 40.5
BcaNung00468 Brassica carinata HOM05D001038 ORTHO05D000395 7.5e-07 58.5 108 35.2
C07p35880 Brassica napus HOM05D001038 ORTHO05D017617 7.5e-07 58.5 44 65.9
Dinv23910 Davidia involucrata HOM05D000251 ORTHO05D002506 7.5e-07 58.5 45 60.0
Dinv24590 Davidia involucrata HOM05D000251 ORTHO05D002506 7.5e-07 58.5 45 60.0
SGA_v2.0_scaffold196G40985 Striga asiatica HOM05D000251 ORTHO05D002506 7.5e-07 58.5 43 60.5
Lj7A494T49 Lonicera japonica HOM05D000251 ORTHO05D002506 1.7e-06 57.4 45 60.0
MD02G1263000 Malus domestica HOM05D000251 ORTHO05D002506 1.7e-06 57.4 45 60.0
TAR623G0778 Trochodendron aralioides HOM05D000251 ORTHO05D002506 1.7e-06 57.4 45 57.8
Atru.chr12.1181 Acer truncatum HOM05D000251 ORTHO05D002506 2.2e-06 57.0 45 53.3
BcaC09g49302 Brassica carinata HOM05D034069 ORTHO05D032851 2.2e-06 57.0 40 65.0
ECA238G3148 Erigeron canadensis HOM05D000251 ORTHO05D002506 2.2e-06 57.0 45 60.0
Thhalv10002975m.g Eutrema salsugineum HOM05D001038 ORTHO05D000395 2.2e-06 57.0 62 43.5
Lsat_1_v5_gn_2_67020 Lactuca sativa HOM05D000251 ORTHO05D002506 2.2e-06 57.0 45 55.6
Oeu058673.1 Olea europaea HOM05D000251 ORTHO05D002506 2.2e-06 57.0 43 53.5
COL.COLO4_20815 Corchorus olitorius HOM05D000251 ORTHO05D002506 2.8e-06 56.6 47 57.4
Potri.010G246200 Populus trichocarpa HOM05D000251 ORTHO05D002506 2.8e-06 56.6 46 58.7
C03p52320 Brassica napus HOM05D001038 ORTHO05D032864 3.7e-06 56.2 43 62.8
Thecc.10G125900 Theobroma cacao HOM05D000251 ORTHO05D002506 3.7e-06 56.2 45 57.8
C03p24850 Brassica napus HOM05D023990 ORTHO05D032040 4.8e-06 55.8 46 52.2
BolC3t14873H Brassica oleracea HOM05D023990 ORTHO05D032040 4.8e-06 55.8 46 52.2
DCAR_006627 Daucus carota HOM05D000251 ORTHO05D002506 4.8e-06 55.8 47 59.6
FAN01G1409 Fragaria x ananassa HOM05D000251 ORTHO05D002506 6.3e-06 55.5 45 60.0
HanXRQChr09g0254641 Helianthus annuus HOM05D000251 ORTHO05D002506 8.2e-06 55.1 53 50.9
Sabra08G0009100 Salix brachista HOM05D000251 ORTHO05D002506 8.2e-06 55.1 47 57.4


User provided reference genes

Program Settings