Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB06g26875 Brassica carinata HOM05D006330 ORTHO05D008013 8.0e-35 149.8 73 100.0
BcaC06g35817 Brassica carinata HOM05D006330 ORTHO05D008013 1.4e-23 112.5 64 92.2
A07p06930 Brassica napus HOM05D006330 ORTHO05D008013 1.4e-23 112.5 64 92.2
C07p10530 Brassica napus HOM05D006330 ORTHO05D008013 1.4e-23 112.5 64 92.2
BolC7t41520H Brassica oleracea HOM05D006330 ORTHO05D008013 1.4e-23 112.5 64 92.2
BraA07t28484Z Brassica rapa HOM05D006330 ORTHO05D008013 1.4e-23 112.5 64 92.2
Sp3g22990 Schrenkiella parvula HOM05D006330 ORTHO05D008013 1.8e-23 112.1 64 90.6
BcaB06g26747 Brassica carinata HOM05D006330 ORTHO05D008013 3.1e-23 111.3 64 90.6
Thhalv10002617m.g Eutrema salsugineum HOM05D006330 ORTHO05D008013 3.1e-23 111.3 64 90.6
BcaB08g34453 Brassica carinata HOM05D006330 ORTHO05D008013 9.1e-23 109.8 64 90.6
BcaC01g03225 Brassica carinata HOM05D006330 ORTHO05D008013 1.2e-22 109.4 64 90.6
A03p44190 Brassica napus HOM05D006330 ORTHO05D008013 1.2e-22 109.4 64 90.6
C03p54570 Brassica napus HOM05D006330 ORTHO05D008013 1.2e-22 109.4 64 90.6
BolC3t17744H Brassica oleracea HOM05D006330 ORTHO05D008013 1.2e-22 109.4 64 90.6
BraA03t13548Z Brassica rapa HOM05D006330 ORTHO05D008013 1.2e-22 109.4 64 90.6
Carub.0003s2579 Capsella rubella HOM05D006330 ORTHO05D008013 5.0e-21 104.0 64 84.4
AL3G41590 Arabidopsis lyrata HOM05D006330 ORTHO05D008013 5.5e-20 100.5 64 81.2
CARHR101770 Cardamine hirsuta HOM05D006330 ORTHO05D008013 1.6e-19 99.0 64 79.7
Aa31sc18G40 Aethionema arabicum HOM05D006330 ORTHO05D008013 2.8e-19 98.2 64 79.7
AT3G25470 Arabidopsis thaliana HOM05D006330 ORTHO05D008013 6.1e-19 97.1 64 78.1
SEGI_37995 Sequoiadendron giganteum HOM05D006330 ORTHO05D008013 1.4e-15 85.9 64 68.8
PSO675G8411 Papaver somniferum HOM05D006330 ORTHO05D008013 2.4e-15 85.1 69 58.0
THA.LOC104804704 Tarenaya hassleriana HOM05D006330 ORTHO05D008013 4.1e-15 84.3 64 68.8
MELO3C021126.2 Cucumis melo HOM05D006330 ORTHO05D008013 7.0e-15 83.6 64 68.8
CsaV3_7G026730 Cucumis sativus L. HOM05D006330 ORTHO05D008013 9.2e-15 83.2 64 68.8
PSO675G8704 Papaver somniferum HOM05D006330 ORTHO05D008013 2.7e-14 81.6 64 60.9
Solyc09g047870.4 Solanum lycopersicum HOM05D006330 ORTHO05D008013 3.5e-14 81.3 64 62.5
Sopen09g015980 Solanum pennellii HOM05D006330 ORTHO05D008013 3.5e-14 81.3 64 62.5
CBR_g60689 Chara braunii HOM05D006330 ORTHO05D008013 5.9e-14 80.5 64 64.1
Actinidia34530 Actinidia chinensis HOM05D006330 ORTHO05D008013 7.8e-14 80.1 64 65.6
CAN.G253.5 Capsicum annuum HOM05D006330 ORTHO05D008013 7.8e-14 80.1 64 62.5
Manes.12G055500 Manihot esculenta HOM05D006330 ORTHO05D008013 7.8e-14 80.1 64 64.1
Actinidia23802 Actinidia chinensis HOM05D006330 ORTHO05D008013 1.0e-13 79.7 64 65.6
CANSAT01G2136 Cannabis sativa HOM05D006330 ORTHO05D008013 1.0e-13 79.7 64 65.6
Nitab4.5_0000038g0340 Nicotiana tabacum HOM05D006330 ORTHO05D008013 1.0e-13 79.7 64 64.1
Nitab4.5_0010469g0010 Nicotiana tabacum HOM05D006330 ORTHO05D008013 1.0e-13 79.7 64 64.1
Peaxi162Scf00841g00112 Petunia axillaris HOM05D006330 ORTHO05D008013 1.0e-13 79.7 64 64.1
Haze_03505 Corylus avellana HOM05D006330 ORTHO05D008013 1.3e-13 79.3 64 67.2
Dinv28793 Davidia involucrata HOM05D006330 ORTHO05D008013 1.3e-13 79.3 64 65.6
Migut.D00775 Erythranthe guttata HOM05D006330 ORTHO05D008013 1.3e-13 79.3 64 59.4
FvH4_2g17480 Fragaria vesca HOM05D006330 ORTHO05D008013 1.3e-13 79.3 64 67.2
FAN15G1514 Fragaria x ananassa HOM05D006330 ORTHO05D008013 1.3e-13 79.3 64 67.2
RcHm_v2.0_Chr6g0282221 Rosa chinensis HOM05D006330 ORTHO05D008013 1.3e-13 79.3 64 67.2
Atru.chr6.3528 Acer truncatum HOM05D006330 ORTHO05D008013 2.3e-13 78.6 64 64.1
ClCG09G008360 Citrullus lanatus HOM05D006330 ORTHO05D008013 2.3e-13 78.6 64 65.6
Sabra14G0134300 Salix brachista HOM05D006330 ORTHO05D008013 2.3e-13 78.6 64 65.6
Cfa010572 Carpinus fangiana HOM05D006330 ORTHO05D008013 3.9e-13 77.8 64 65.6
Potri.014G175500 Populus trichocarpa HOM05D006330 ORTHO05D008013 3.9e-13 77.8 64 65.6
CiPaw.13G055600 Carya illinoinensis HOM05D006330 ORTHO05D008013 5.0e-13 77.4 64 64.1
AUR62008069 Chenopodium quinoa HOM05D006330 ORTHO05D008013 5.0e-13 77.4 64 62.5
AUR62028646 Chenopodium quinoa HOM05D006330 ORTHO05D008013 5.0e-13 77.4 64 62.5
Cc01_g15880 Coffea canephora HOM05D006330 ORTHO05D008013 5.0e-13 77.4 64 64.1
Nn7g37444 Nelumbo nucifera HOM05D006330 ORTHO05D008013 5.0e-13 77.4 64 65.6
Aqoxy2G02383 Aquilegia oxysepala HOM05D006330 ORTHO05D008013 6.6e-13 77.0 64 57.8
Glyma.03G097100 Glycine max HOM05D006330 ORTHO05D008013 6.6e-13 77.0 64 62.5
Lj2C1112G6 Lonicera japonica HOM05D006330 ORTHO05D008013 6.6e-13 77.0 64 62.5
Phvul.010G036400 Phaseolus vulgaris HOM05D006330 ORTHO05D008013 6.6e-13 77.0 64 64.1
TAR362G0826 Trochodendron aralioides HOM05D006330 ORTHO05D008013 6.6e-13 77.0 64 64.1
VMungo0331G1131 Vigna mungo HOM05D006330 ORTHO05D008013 6.6e-13 77.0 64 64.1
Cpa.g.sc8.41 Carica papaya HOM05D006330 ORTHO05D008013 8.6e-13 76.6 64 62.5
SalBow3G0290 Salvia bowleyana HOM05D006330 ORTHO05D008013 8.6e-13 76.6 64 60.9
Sed0009827 Sechium edule HOM05D006330 ORTHO05D008013 8.6e-13 76.6 64 62.5
GSVIVG01001532001 Vitis vinifera HOM05D006330 ORTHO05D008013 8.6e-13 76.6 64 64.1
EL10Ac5g10587 Beta vulgaris HOM05D006330 ORTHO05D008013 1.1e-12 76.3 64 60.9
Duzib133G1456 Durio zibethinus HOM05D006330 ORTHO05D008013 1.1e-12 76.3 64 62.5
MD10G1148200 Malus domestica HOM05D006330 ORTHO05D008013 1.1e-12 76.3 64 64.1
Prupe.8G187200 Prunus persica HOM05D006330 ORTHO05D008013 1.1e-12 76.3 64 62.5
Rhsim01G0247700 Rhododendron simsii HOM05D006330 ORTHO05D008013 1.1e-12 76.3 64 62.5
CDE02G1604 Ceratophyllum demersum HOM05D006330 ORTHO05D008013 1.5e-12 75.9 64 60.9
Eucgr.K02361 Eucalyptus grandis HOM05D006330 ORTHO05D008013 1.5e-12 75.9 64 59.4
FAN24G2605 Fragaria x ananassa HOM05D006330 ORTHO05D008013 1.5e-12 75.9 64 64.1
Glyma.07G124200 Glycine max HOM05D006330 ORTHO05D008013 1.9e-12 75.5 64 62.5
PGR044G2230 Punica granatum HOM05D006330 ORTHO05D008013 1.9e-12 75.5 64 59.4
TWI36G1481 Tripterygium wilfordii HOM05D006330 ORTHO05D008013 1.9e-12 75.5 64 62.5
Ca_23158_v3 Cicer arietinum L. HOM05D006330 ORTHO05D008013 2.5e-12 75.1 64 62.5
Ciclev10015989m.g Citrus clementina HOM05D006330 ORTHO05D008013 2.5e-12 75.1 64 62.5
Sc05g0001630 Simmondsia chinensis HOM05D006330 ORTHO05D008013 2.5e-12 75.1 64 60.9
Thecc.01G207700 Theobroma cacao HOM05D006330 ORTHO05D008013 2.5e-12 75.1 64 60.9
SGA_v2.0_scaffold231G43447 Striga asiatica HOM05D006330 ORTHO05D008013 3.3e-12 74.7 64 59.4
ATR0743G141 Amborella trichopoda HOM05D006330 ORTHO05D008013 4.3e-12 74.3 64 59.4
COL.COLO4_34269 Corchorus olitorius HOM05D006330 ORTHO05D008013 4.3e-12 74.3 64 60.9
Gohir.A11G143900 Gossypium hirsutum HOM05D006330 ORTHO05D008013 4.3e-12 74.3 64 59.4
Lalb_Chr12g0210221 Lupinus albus HOM05D006330 ORTHO05D008013 4.3e-12 74.3 64 59.4
HPP92_007591 Vanilla planifolia HOM05D006330 ORTHO05D008013 4.3e-12 74.3 64 60.9
arahy.Tifrunner.gnm1.ann1.84ZR2Z Arachis hypogaea HOM05D006330 ORTHO05D008013 5.6e-12 73.9 64 62.5
MSTRG.21296 Avicennia marina HOM05D006330 ORTHO05D008013 5.6e-12 73.9 64 59.4
Ciclev10018050m.g Citrus clementina HOM05D006330 ORTHO05D008013 5.6e-12 73.9 64 62.5
DCAR_004774 Daucus carota HOM05D006330 ORTHO05D008013 5.6e-12 73.9 64 60.9
Gohir.D11G150300 Gossypium hirsutum HOM05D006330 ORTHO05D008013 5.6e-12 73.9 64 59.4
Gorai.007G161200 Gossypium raimondii HOM05D006330 ORTHO05D008013 5.6e-12 73.9 64 59.4
HanXRQChr07g0190561 Helianthus annuus HOM05D006330 ORTHO05D008013 5.6e-12 73.9 64 59.4
MBI10_g35385_MAGBIO Magnolia biondii HOM05D006330 ORTHO05D008013 7.3e-12 73.6 64 59.4
Os11g0247400 Oryza sativa ssp. japonica HOM05D006330 ORTHO05D008013 7.3e-12 73.6 64 59.4
QL09p047707 Quercus lobata HOM05D006330 ORTHO05D008013 7.3e-12 73.6 64 60.9
Medtr8g010130 Medicago truncatula HOM05D006330 ORTHO05D008013 9.5e-12 73.2 64 62.5
Hund09482 Selenicereus undatus HOM05D006330 ORTHO05D008013 9.5e-12 73.2 64 60.9
Lsat_1_v5_gn_9_16880 Lactuca sativa HOM05D006330 ORTHO05D008013 1.2e-11 72.8 64 57.8
Lj3g0006219 Lotus japonicus HOM05D006330 ORTHO05D008013 1.2e-11 72.8 64 60.9
ECA247G1307 Erigeron canadensis HOM05D006330 ORTHO05D008013 1.6e-11 72.4 64 59.4
Pp3c24_1560 Physcomitrium patens HOM05D006330 ORTHO05D008013 1.6e-11 72.4 64 60.9
Zm00001eb168340 Zea mays HOM05D006330 ORTHO05D008013 3.6e-11 71.2 64 56.2
arahy.Tifrunner.gnm1.ann1.3RIK1P Arachis hypogaea HOM05D006330 ORTHO05D008013 4.7e-11 70.9 64 60.9
TPR.G17377 Trifolium pratense HOM05D006330 ORTHO05D008013 4.7e-11 70.9 64 60.9
Psat4g208240 Pisum sativum HOM05D006330 ORTHO05D008013 6.1e-11 70.5 64 59.4
MCO07G099 Micromonas commoda HOM05D006330 ORTHO05D008013 1.4e-10 69.3 64 56.2
vmacro14689 Vaccinium macrocarpon HOM05D006330 ORTHO05D008013 1.4e-10 69.3 78 52.6
AagrBONN_evm.TU.Sc2ySwM_368.2380 Anthoceros agrestis HOM05D006330 ORTHO05D008013 5.2e-10 67.4 64 56.2
Hma1.2p1_0161F.1_g071650 Hydrangea macrophylla HOM05D006330 ORTHO05D008013 5.2e-10 67.4 58 62.1
Mapoly0006s0124 Marchantia polymorpha HOM05D006330 ORTHO05D008013 8.9e-10 66.6 64 54.7
SMO141G0006 Selaginella moellendorffii HOM05D006330 ORTHO05D008013 3.4e-09 64.7 64 54.7
Oeu049580.1 Olea europaea HOM05D006330 ORTHO05D008013 4.4e-09 64.3 64 54.7
arahy.Tifrunner.gnm1.ann1.VBTZ6V Arachis hypogaea HOM05D006330 ORTHO05D008013 3.2e-07 58.2 64 53.1
Cfa009322 Carpinus fangiana HOM05D006614 ORTHO05D008217 7.0e-07 57.0 53 60.4
SMO186G0001 Selaginella moellendorffii HOM05D006330 ORTHO05D008013 1.6e-06 55.8 55 54.5
PRCOL_00000451 Prasinoderma coloniale HOM05D006330 ORTHO05D008013 3.5e-06 54.7 84 45.2


User provided reference genes

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