Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB06g26628 Brassica carinata HOM05D000083 ORTHO05D001732 2.0e-44 182.2 89 100.0
BcaB01g02860 Brassica carinata HOM05D000083 ORTHO05D001732 1.4e-29 132.9 94 77.7
A03p28060 Brassica napus HOM05D000083 ORTHO05D001732 1.9e-26 122.5 89 75.3
BraA03t12019Z Brassica rapa HOM05D000083 ORTHO05D001732 1.9e-26 122.5 89 75.3
BcaC01g04771 Brassica carinata HOM05D000083 ORTHO05D001732 2.3e-24 115.5 87 73.6
C03p33920 Brassica napus HOM05D000083 ORTHO05D001732 2.3e-24 115.5 87 73.6
BolC3t15705H Brassica oleracea HOM05D000083 ORTHO05D001732 2.3e-24 115.5 87 73.6
Sp6g09370 Schrenkiella parvula HOM05D000083 ORTHO05D001732 4.4e-15 84.7 119 48.7
AL6G42310 Arabidopsis lyrata HOM05D000083 ORTHO05D001732 1.1e-13 80.1 73 56.2
AT4G08500 Arabidopsis thaliana HOM05D000083 ORTHO05D001732 1.1e-13 80.1 70 58.6
BcaB01g01347 Brassica carinata HOM05D000083 ORTHO05D001732 1.4e-13 79.7 53 69.8
BcaC04g20908 Brassica carinata HOM05D000083 ORTHO05D001732 3.2e-13 78.6 65 63.1
C09p38090 Brassica napus HOM05D000083 ORTHO05D001732 3.2e-13 78.6 65 63.1
BolC9t56645H Brassica oleracea HOM05D000083 ORTHO05D001732 3.2e-13 78.6 65 63.1
Carub.0006s2703 Capsella rubella HOM05D000083 ORTHO05D001732 1.6e-12 76.3 92 50.0
AL6G42300 Arabidopsis lyrata HOM05D000083 ORTHO05D001732 3.5e-12 75.1 107 46.7
A09p30200 Brassica napus HOM05D000083 ORTHO05D001732 3.5e-12 75.1 69 58.0
BraA09t38584Z Brassica rapa HOM05D000083 ORTHO05D001732 3.5e-12 75.1 69 58.0
CARHR259530 Cardamine hirsuta HOM05D000083 ORTHO05D001732 1.0e-11 73.6 66 59.1
Thhalv10028523m.g Eutrema salsugineum HOM05D000083 ORTHO05D001732 1.3e-11 73.2 95 46.3
Carub.0006s2704 Capsella rubella HOM05D000083 ORTHO05D001732 1.7e-11 72.8 68 54.4
C01p13460 Brassica napus HOM05D000005 ORTHO05D011295 3.0e-11 72.0 43 74.4
BolC1t01320H Brassica oleracea HOM05D000005 ORTHO05D011295 3.0e-11 72.0 43 74.4
AT4G08480 Arabidopsis thaliana HOM05D000083 ORTHO05D001732 6.6e-11 70.9 62 59.7
A01p11410 Brassica napus HOM05D000005 ORTHO05D011295 1.5e-10 69.7 44 70.5
BraA01t01087Z Brassica rapa HOM05D000005 ORTHO05D011295 1.5e-10 69.7 44 70.5
TPR.G30428 Trifolium pratense HOM05D000083 ORTHO05D001732 1.5e-10 69.7 63 50.8
Gohir.A02G074800 Gossypium hirsutum HOM05D000083 ORTHO05D001732 3.3e-10 68.6 76 46.1
Gohir.D02G081800 Gossypium hirsutum HOM05D000083 ORTHO05D001732 4.3e-10 68.2 76 44.7
Gorai.005G091700 Gossypium raimondii HOM05D000083 ORTHO05D001732 4.3e-10 68.2 76 44.7
BcaC09g51403 Brassica carinata HOM05D000005 ORTHO05D011295 2.8e-09 65.5 43 72.1
Thecc.08G117200 Theobroma cacao HOM05D000083 ORTHO05D001732 3.6e-09 65.1 74 44.6
CANSAT25G3599 Cannabis sativa HOM05D000083 ORTHO05D001732 4.7e-09 64.7 81 45.7
Lj1g0005761 Lotus japonicus HOM05D000083 ORTHO05D001732 4.7e-09 64.7 78 43.6
THA.LOC104817008 Tarenaya hassleriana HOM05D000083 ORTHO05D001732 8.0e-09 63.9 82 40.2
Atru.chr13.1320 Acer truncatum HOM05D000083 ORTHO05D001732 1.1e-08 63.5 72 44.4
Atru.chr13.1364 Acer truncatum HOM05D000083 ORTHO05D001732 1.1e-08 63.5 72 44.4
Potri.005G172200 Populus trichocarpa HOM05D000083 ORTHO05D001732 1.1e-08 63.5 79 39.2
THA.LOC104807027 Tarenaya hassleriana HOM05D000083 ORTHO05D001732 1.4e-08 63.2 50 52.0
vmacro01789 Vaccinium macrocarpon HOM05D000083 ORTHO05D001732 1.4e-08 63.2 69 50.7
Dinv27381 Davidia involucrata HOM05D000083 ORTHO05D001732 3.1e-08 62.0 42 61.9
Duzib041G0740 Durio zibethinus HOM05D000083 ORTHO05D001732 3.1e-08 62.0 75 44.0
TAR624G1272 Trochodendron aralioides HOM05D000083 ORTHO05D001732 3.1e-08 62.0 59 50.8
arahy.Tifrunner.gnm1.ann1.S1M1U3 Arachis hypogaea HOM05D000083 ORTHO05D001732 4.0e-08 61.6 49 55.1
arahy.Tifrunner.gnm1.ann1.XPKP8Y Arachis hypogaea HOM05D000083 ORTHO05D001732 4.0e-08 61.6 49 55.1
Ca_26610_v3 Cicer arietinum L. HOM05D000083 ORTHO05D001732 4.0e-08 61.6 63 46.0
Medtr5g060350 Medicago truncatula HOM05D000083 ORTHO05D001732 4.0e-08 61.6 49 55.1
VMungo1309G2019 Vigna mungo HOM05D000083 ORTHO05D001732 4.0e-08 61.6 52 51.9
arahy.Tifrunner.gnm1.ann1.90BUAB Arachis hypogaea HOM05D000083 ORTHO05D001732 5.2e-08 61.2 44 56.8
arahy.Tifrunner.gnm1.ann1.SQ16A9 Arachis hypogaea HOM05D000083 ORTHO05D001732 5.2e-08 61.2 44 56.8
Glyma.04G253500 Glycine max HOM05D000083 ORTHO05D001732 5.2e-08 61.2 52 51.9
Phvul.009G025700 Phaseolus vulgaris HOM05D000083 ORTHO05D001732 5.2e-08 61.2 52 51.9
Sabra05G0129700 Salix brachista HOM05D000083 ORTHO05D001732 5.2e-08 61.2 66 43.9
Aa31LG1G10850 Aethionema arabicum HOM05D000083 ORTHO05D001732 6.8e-08 60.8 87 42.5
Psat2g076840 Pisum sativum HOM05D000083 ORTHO05D001732 6.8e-08 60.8 49 55.1
Sed0013583 Sechium edule HOM05D000083 ORTHO05D001732 6.8e-08 60.8 53 49.1
MELO3C022777.2 Cucumis melo HOM05D000083 ORTHO05D001732 8.9e-08 60.5 80 37.5
Lalb_Chr11g0065711 Lupinus albus HOM05D000083 ORTHO05D001732 8.9e-08 60.5 66 42.4
TPR.G32940 Trifolium pratense HOM05D000083 ORTHO05D001732 8.9e-08 60.5 40 60.0
ATR0171G032 Amborella trichopoda HOM05D000083 ORTHO05D001732 1.2e-07 60.1 88 37.5
CiPaw.06G025200 Carya illinoinensis HOM05D000083 ORTHO05D001732 1.2e-07 60.1 49 51.0
CsaV3_5G023410 Cucumis sativus L. HOM05D000083 ORTHO05D001732 1.2e-07 60.1 80 37.5
Lalb_Chr10g0101991 Lupinus albus HOM05D000083 ORTHO05D001732 1.2e-07 60.1 47 53.2
ClCG03G009250 Citrullus lanatus HOM05D000083 ORTHO05D001732 1.5e-07 59.7 80 37.5
QL09p037356 Quercus lobata HOM05D000083 ORTHO05D001732 2.0e-07 59.3 74 41.9
Glyma.06G108900 Glycine max HOM05D000083 ORTHO05D001732 2.6e-07 58.9 66 45.5
Oeu012740.1 Olea europaea HOM05D000083 ORTHO05D001732 2.6e-07 58.9 52 51.9
DCAR_014286 Daucus carota HOM05D000083 ORTHO05D001732 3.4e-07 58.5 49 51.0
Lj5A247G17 Lonicera japonica HOM05D000083 ORTHO05D001732 3.4e-07 58.5 48 54.2
MBI06_g01051_MAGBIO Magnolia biondii HOM05D000083 ORTHO05D001732 3.4e-07 58.5 70 47.1
TWI12G0717 Tripterygium wilfordii HOM05D000083 ORTHO05D001732 3.4e-07 58.5 42 64.3
FAN13G2464 Fragaria x ananassa HOM05D000083 ORTHO05D001732 4.4e-07 58.2 53 47.2
Glyma.13G084100 Glycine max HOM05D000083 ORTHO05D001732 4.4e-07 58.2 42 57.1
VMungo0647G1263 Vigna mungo HOM05D000083 ORTHO05D001732 4.4e-07 58.2 39 61.5
Medtr3g073250 Medicago truncatula HOM05D000083 ORTHO05D001732 5.8e-07 57.8 52 51.9
TAR376G0100 Trochodendron aralioides HOM05D000083 ORTHO05D001732 5.8e-07 57.8 42 57.1
Phvul.008G168100 Phaseolus vulgaris HOM05D000083 ORTHO05D001732 7.5e-07 57.4 56 48.2
Psat2g078320 Pisum sativum HOM05D000083 ORTHO05D001732 7.5e-07 57.4 49 53.1
CiPaw.06G149200 Carya illinoinensis HOM05D000083 ORTHO05D001732 9.8e-07 57.0 51 49.0
Gohir.A05G232100 Gossypium hirsutum HOM05D000083 ORTHO05D001732 9.8e-07 57.0 76 40.8
Gohir.D05G234350 Gossypium hirsutum HOM05D000083 ORTHO05D001732 9.8e-07 57.0 76 40.8
TWI59G0759 Tripterygium wilfordii HOM05D000083 ORTHO05D001732 9.8e-07 57.0 53 49.1
TAR628G1287 Trochodendron aralioides HOM05D000083 ORTHO05D001732 9.8e-07 57.0 42 57.1
Dinv26714 Davidia involucrata HOM05D000083 ORTHO05D001732 1.3e-06 56.6 56 50.0
Glyma.14G166000 Glycine max HOM05D000083 ORTHO05D001732 1.3e-06 56.6 42 54.8
Gorai.009G242600 Gossypium raimondii HOM05D000083 ORTHO05D001732 1.3e-06 56.6 76 40.8
RcHm_v2.0_Chr7g0223451 Rosa chinensis HOM05D000083 ORTHO05D001732 1.3e-06 56.6 42 54.8
Medtr5g059880 Medicago truncatula HOM05D000083 ORTHO05D001732 1.7e-06 56.2 39 64.1
Psat5g135400 Pisum sativum HOM05D000083 ORTHO05D001732 1.7e-06 56.2 52 48.1
CSS0017611 Camellia sinensis var. sinensis HOM05D000083 ORTHO05D001732 2.2e-06 55.8 78 42.3
FAN08G1069 Fragaria x ananassa HOM05D000083 ORTHO05D001732 2.2e-06 55.8 56 48.2
Os03g0703400 Oryza sativa ssp. japonica HOM05D000083 ORTHO05D001732 2.2e-06 55.8 45 51.1
Prupe.1G564100 Prunus persica HOM05D000083 ORTHO05D001732 2.2e-06 55.8 78 35.9
Zm00001eb106600 Zea mays HOM05D000367 ORTHO05D001227 2.9e-06 55.5 42 54.8
CSS0024004 Camellia sinensis var. sinensis HOM05D000083 ORTHO05D001732 3.7e-06 55.1 72 40.3
Duzib116G0173 Durio zibethinus HOM05D000083 ORTHO05D001732 3.7e-06 55.1 72 43.1
FAN18G1008 Fragaria x ananassa HOM05D000083 ORTHO05D001732 3.7e-06 55.1 42 52.4
Sabra02G0070000 Salix brachista HOM05D000083 ORTHO05D001732 3.7e-06 55.1 49 49.0
vmacro00797 Vaccinium macrocarpon HOM05D000083 ORTHO05D001732 3.7e-06 55.1 75 42.7
AL7G34620 Arabidopsis lyrata HOM05D000005 ORTHO05D011295 4.9e-06 54.7 39 61.5
Duzib093G0386 Durio zibethinus HOM05D000083 ORTHO05D001732 4.9e-06 54.7 74 36.5
Manes.02G158900 Manihot esculenta HOM05D000083 ORTHO05D001732 4.9e-06 54.7 49 51.0
Potri.002G088900 Populus trichocarpa HOM05D000083 ORTHO05D001732 4.9e-06 54.7 42 54.8
TPR.G32960 Trifolium pratense HOM05D000083 ORTHO05D001732 4.9e-06 54.7 44 50.0
CSS0046727 Camellia sinensis var. sinensis HOM05D000083 ORTHO05D001732 6.4e-06 54.3 42 52.4
Cfa005547 Carpinus fangiana HOM05D000083 ORTHO05D001732 6.4e-06 54.3 56 48.2
Haze_01622 Corylus avellana HOM05D000083 ORTHO05D001732 6.4e-06 54.3 56 48.2


User provided reference genes

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