Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB06g26344 Brassica carinata HOM05D004138 ORTHO05D004898 7.5e-147 523.9 269 100.0
BcaC05g28070 Brassica carinata HOM05D004138 ORTHO05D004898 1.2e-133 479.9 271 92.6
C05p40930 Brassica napus HOM05D004138 ORTHO05D004898 1.2e-133 479.9 271 92.6
Sp3g20190 Schrenkiella parvula HOM05D004138 ORTHO05D004898 4.4e-131 471.5 269 91.8
A05p26300 Brassica napus HOM05D004138 ORTHO05D004898 1.4e-129 466.5 260 93.8
BolC5t32835H Brassica oleracea HOM05D004138 ORTHO05D004898 9.2e-129 463.8 261 92.3
Thhalv10021310m.g Eutrema salsugineum HOM05D004138 ORTHO05D004898 2.7e-128 462.2 269 88.8
BcaB04g20518 Brassica carinata HOM05D004138 ORTHO05D004898 1.9e-126 456.1 272 90.1
Carub.0003s2260 Capsella rubella HOM05D004138 ORTHO05D004898 7.5e-123 444.1 270 87.0
BcaC09g49174 Brassica carinata HOM05D004138 ORTHO05D004898 1.3e-122 443.4 271 87.5
CARHR098330 Cardamine hirsuta HOM05D004138 ORTHO05D004898 1.3e-122 443.4 269 87.0
A01p32660 Brassica napus HOM05D004138 ORTHO05D004898 3.7e-122 441.8 255 89.4
CARHR221500 Cardamine hirsuta HOM05D004138 ORTHO05D004898 4.1e-121 438.3 269 84.8
BraA01t03394Z Brassica rapa HOM05D004138 ORTHO05D004898 1.7e-119 433.0 257 87.9
AT3G22425 Arabidopsis thaliana HOM05D004138 ORTHO05D004898 5.1e-119 431.4 270 85.2
C01p41840 Brassica napus HOM05D004138 ORTHO05D004898 6.6e-119 431.0 261 87.4
AL7G40920 Arabidopsis lyrata HOM05D004138 ORTHO05D004898 1.5e-118 429.9 270 83.3
BolC1t04138H Brassica oleracea HOM05D004138 ORTHO05D004898 7.3e-118 427.6 261 87.0
Aa31LG8G8990 Aethionema arabicum HOM05D004138 ORTHO05D004898 1.3e-114 416.8 276 80.8
Sp7g13050 Schrenkiella parvula HOM05D004138 ORTHO05D004898 3.5e-112 408.7 267 82.0
AT4G14910 Arabidopsis thaliana HOM05D004138 ORTHO05D004898 4.6e-112 408.3 268 79.9
THA.LOC104808545 Tarenaya hassleriana HOM05D004138 ORTHO05D004898 1.3e-111 406.8 274 78.1
Carub.0007s2719 Capsella rubella HOM05D004138 ORTHO05D004898 1.7e-111 406.4 271 80.1
BcaB02g07851 Brassica carinata HOM05D004138 ORTHO05D004898 3.0e-111 405.6 269 81.0
Thhalv10025980m.g Eutrema salsugineum HOM05D004138 ORTHO05D004898 1.9e-110 402.9 245 85.7
arahy.Tifrunner.gnm1.ann1.WZ653D Arachis hypogaea HOM05D004138 ORTHO05D004898 6.0e-104 381.3 247 81.0
arahy.Tifrunner.gnm1.ann1.M0DXBI Arachis hypogaea HOM05D004138 ORTHO05D004898 1.0e-103 380.6 247 80.6
arahy.Tifrunner.gnm1.ann1.Y7X6HY Arachis hypogaea HOM05D004138 ORTHO05D004898 5.1e-103 378.3 247 80.2
CANSAT78G2043 Cannabis sativa HOM05D004138 ORTHO05D004898 5.6e-102 374.8 244 79.5
Gorai.006G239100 Gossypium raimondii HOM05D004138 ORTHO05D004898 2.1e-101 372.9 234 81.6
Ciclev10005599m.g Citrus clementina HOM05D004138 ORTHO05D004898 2.8e-101 372.5 234 81.6
Gohir.A09G215700 Gossypium hirsutum HOM05D004138 ORTHO05D004898 2.8e-101 372.5 234 81.6
Potri.010G087600 Populus trichocarpa HOM05D004138 ORTHO05D004898 2.8e-101 372.5 216 86.1
Lj5g0002897 Lotus japonicus HOM05D004138 ORTHO05D004898 4.8e-101 371.7 253 76.7
Phvul.007G057200 Phaseolus vulgaris HOM05D004138 ORTHO05D004898 4.8e-101 371.7 251 78.9
Phvul.007G275100 Phaseolus vulgaris HOM05D004138 ORTHO05D004898 4.8e-101 371.7 221 85.5
TWI15G0835 Tripterygium wilfordii HOM05D004138 ORTHO05D004898 6.2e-101 371.3 223 84.3
Sed0017770 Sechium edule HOM05D004138 ORTHO05D004898 8.1e-101 370.9 261 74.3
Hma1.2p1_1344F.1_g277140 Hydrangea macrophylla HOM05D004138 ORTHO05D004898 1.1e-100 370.5 240 79.6
Gohir.D09G218200 Gossypium hirsutum HOM05D004138 ORTHO05D004898 1.4e-100 370.2 234 81.2
Atru.ctg752_3.80 Acer truncatum HOM05D004138 ORTHO05D004898 1.8e-100 369.8 265 74.0
PGR004G1517 Punica granatum HOM05D004138 ORTHO05D004898 1.8e-100 369.8 272 73.5
TPR.G34563 Trifolium pratense HOM05D004138 ORTHO05D004898 2.4e-100 369.4 247 79.4
Lalb_Chr10g0096121 Lupinus albus HOM05D004138 ORTHO05D004898 3.1e-100 369.0 269 71.0
VMungo0720G0383 Vigna mungo HOM05D004138 ORTHO05D004898 4.0e-100 368.6 252 78.6
Eucgr.H03482 Eucalyptus grandis HOM05D004138 ORTHO05D004898 9.0e-100 367.5 236 79.7
MD16G1193500 Malus domestica HOM05D004138 ORTHO05D004898 9.0e-100 367.5 265 74.3
VMungo0720G1944 Vigna mungo HOM05D004138 ORTHO05D004898 9.0e-100 367.5 251 78.5
DCAR_027216 Daucus carota HOM05D004138 ORTHO05D004898 1.2e-99 367.1 219 83.6
Ca_26329_v3 Cicer arietinum L. HOM05D004138 ORTHO05D004898 2.0e-99 366.3 224 83.0
MD13G1192800 Malus domestica HOM05D004138 ORTHO05D004898 3.4e-99 365.5 276 71.4
PSO210G3182 Papaver somniferum HOM05D004138 ORTHO05D004898 4.5e-99 365.2 272 71.3
CSS0016260 Camellia sinensis var. sinensis HOM05D004138 ORTHO05D004898 5.8e-99 364.8 211 86.7
Lalb_Chr17g0338611 Lupinus albus HOM05D004138 ORTHO05D004898 5.8e-99 364.8 215 86.0
Nn4g26636 Nelumbo nucifera HOM05D004138 ORTHO05D004898 5.8e-99 364.8 256 73.0
Glyma.20G145900 Glycine max HOM05D004138 ORTHO05D004898 7.6e-99 364.4 250 76.4
Duzib052G0532 Durio zibethinus HOM05D004138 ORTHO05D004898 9.9e-99 364.0 240 78.3
Psat6g207600 Pisum sativum HOM05D004138 ORTHO05D004898 1.3e-98 363.6 224 81.2
Thecc.04G231800 Theobroma cacao HOM05D004138 ORTHO05D004898 1.3e-98 363.6 233 81.1
CsaV3_7G022530 Cucumis sativus L. HOM05D004138 ORTHO05D004898 1.7e-98 363.2 267 71.2
Manes.03G178800 Manihot esculenta HOM05D004138 ORTHO05D004898 2.2e-98 362.8 234 78.6
PSO832G0920 Papaver somniferum HOM05D004138 ORTHO05D004898 2.2e-98 362.8 249 73.5
QL06p002509 Quercus lobata HOM05D004138 ORTHO05D004898 2.2e-98 362.8 242 75.2
TPR.G5464 Trifolium pratense HOM05D004138 ORTHO05D004898 3.8e-98 362.1 250 76.4
Ca_10902_v3 Cicer arietinum L. HOM05D004138 ORTHO05D004898 4.9e-98 361.7 209 85.2
Lj3A735T49 Lonicera japonica HOM05D004138 ORTHO05D004898 4.9e-98 361.7 225 80.9
SalBow3G1121 Salvia bowleyana HOM05D004138 ORTHO05D004898 6.4e-98 361.3 250 74.0
DCAR_002386 Daucus carota HOM05D004138 ORTHO05D004898 1.4e-97 360.1 206 85.9
Medtr1g103820 Medicago truncatula HOM05D004138 ORTHO05D004898 1.4e-97 360.1 224 81.7
TAR636G0642 Trochodendron aralioides HOM05D004138 ORTHO05D004898 1.9e-97 359.8 239 74.5
FvH4_4g15510 Fragaria vesca HOM05D004138 ORTHO05D004898 2.4e-97 359.4 263 72.6
CAN.G490.3 Capsicum annuum HOM05D004138 ORTHO05D004898 4.2e-97 358.6 219 81.3
RcHm_v2.0_Chr4g0416251 Rosa chinensis HOM05D004138 ORTHO05D004898 5.4e-97 358.2 219 82.2
CSS0012312 Camellia sinensis var. sinensis HOM05D004138 ORTHO05D004898 7.1e-97 357.8 211 84.8
Oeu050278.3 Olea europaea HOM05D004138 ORTHO05D004898 1.2e-96 357.1 208 84.6
PGSC0003DMG400030085 Solanum tuberosum HOM05D004138 ORTHO05D004898 1.6e-96 356.7 201 85.1
CiPaw.02G097200 Carya illinoinensis HOM05D004138 ORTHO05D004898 2.7e-96 355.9 259 72.6
MSTRG.21855 Avicennia marina HOM05D004138 ORTHO05D004898 3.5e-96 355.5 208 83.2
Dinv44535 Davidia involucrata HOM05D004138 ORTHO05D004898 6.0e-96 354.8 271 71.2
Sc10g0004960 Simmondsia chinensis HOM05D004138 ORTHO05D004898 6.0e-96 354.8 206 86.4
Sopen09g030850 Solanum pennellii HOM05D004138 ORTHO05D004898 6.0e-96 354.8 259 70.3
Solyc09g076020.3 Solanum lycopersicum HOM05D004138 ORTHO05D004898 1.0e-95 354.0 259 70.3
Nitab4.5_0001560g0020 Nicotiana tabacum HOM05D004138 ORTHO05D004898 2.3e-95 352.8 191 88.5
Lj6A608T71 Lonicera japonica HOM05D004138 ORTHO05D004898 3.0e-95 352.4 219 79.9
Migut.N00183 Erythranthe guttata HOM05D004138 ORTHO05D004898 3.9e-95 352.1 222 77.9
CiPaw.01G165700 Carya illinoinensis HOM05D004138 ORTHO05D004898 5.1e-95 351.7 252 73.0
Cfa015643 Carpinus fangiana HOM05D004138 ORTHO05D004898 8.7e-95 350.9 217 80.2
Cc03_g03750 Coffea canephora HOM05D004138 ORTHO05D004898 8.7e-95 350.9 215 80.5
TAR365G0475 Trochodendron aralioides HOM05D004138 ORTHO05D004898 1.9e-94 349.7 223 77.1
HanXRQChr14g0432251 Helianthus annuus HOM05D004138 ORTHO05D004898 2.5e-94 349.4 239 74.5
ECA238G3454 Erigeron canadensis HOM05D004138 ORTHO05D004898 4.3e-94 348.6 227 77.1
Rhsim02G0024100 Rhododendron simsii HOM05D004138 ORTHO05D004898 4.3e-94 348.6 189 88.4
Aqoxy2G03389 Aquilegia oxysepala HOM05D004138 ORTHO05D004898 9.6e-94 347.4 237 78.1
CDE07G0326 Ceratophyllum demersum HOM05D004138 ORTHO05D004898 9.6e-94 347.4 215 80.9
FAN07G1942 Fragaria x ananassa HOM05D004138 ORTHO05D004898 9.6e-94 347.4 254 72.8
Lsat_1_v5_gn_2_31480 Lactuca sativa HOM05D004138 ORTHO05D004898 1.6e-93 346.7 264 68.9
FAN17G0737 Fragaria x ananassa HOM05D004138 ORTHO05D004898 2.1e-93 346.3 254 72.4
FAN12G1931 Fragaria x ananassa HOM05D004138 ORTHO05D004898 4.8e-93 345.1 252 72.6
GSVIVG01017973001 Vitis vinifera HOM05D004138 ORTHO05D004898 4.8e-93 345.1 227 76.7
FAN22G1640 Fragaria x ananassa HOM05D004138 ORTHO05D004898 6.2e-93 344.7 223 78.5
EL10Ac1g01312 Beta vulgaris HOM05D004138 ORTHO05D004898 3.1e-92 342.4 219 76.7
Pp3c13_21930 Physcomitrium patens HOM05D004138 ORTHO05D004898 6.9e-92 341.3 198 83.8
ATR0697G231 Amborella trichopoda HOM05D004138 ORTHO05D004898 9.0e-92 340.9 231 74.5
AUR62033623 Chenopodium quinoa HOM05D004138 ORTHO05D004898 1.2e-91 340.5 266 68.0
Os04g0617800 Oryza sativa ssp. japonica HOM05D004138 ORTHO05D004898 1.5e-91 340.1 273 70.0
HanXRQChr09g0265721 Helianthus annuus HOM05D004138 ORTHO05D004898 3.4e-91 339.0 253 69.2
Zm00001eb070570 Zea mays HOM05D004138 ORTHO05D004898 3.4e-91 339.0 224 78.1
Haze_00903 Corylus avellana HOM05D004138 ORTHO05D004898 1.3e-90 337.0 237 74.7
MELO3C012647.2 Cucumis melo HOM05D004138 ORTHO05D004898 1.3e-90 337.0 280 65.0
AUR62034751 Chenopodium quinoa HOM05D004138 ORTHO05D004898 2.9e-90 335.9 257 68.5
Mapoly0095s0045 Marchantia polymorpha HOM05D004138 ORTHO05D004898 1.1e-89 334.0 198 81.3
Haze_03894 Corylus avellana HOM05D004138 ORTHO05D004898 2.1e-88 329.7 233 74.7
Cpa.g.sc58.111 Carica papaya HOM05D004138 ORTHO05D004898 1.0e-87 327.4 224 75.4
CBR_g48324 Chara braunii HOM05D004138 ORTHO05D004898 5.6e-86 321.6 196 80.1
Rhsim02G0024500 Rhododendron simsii HOM05D004138 ORTHO05D004898 1.3e-85 320.5 298 59.1
Sed0010859 Sechium edule HOM05D004138 ORTHO05D004898 3.7e-85 318.9 257 68.5
Nitab4.5_0000043g0130 Nicotiana tabacum HOM05D004138 ORTHO05D004898 4.0e-84 315.5 206 77.2
Prupe.1G013300 Prunus persica HOM05D004138 ORTHO05D004898 1.5e-83 313.5 275 65.8
Hund12131 Selenicereus undatus HOM05D004138 ORTHO05D004898 1.5e-83 313.5 224 74.1
Actinidia36959 Actinidia chinensis HOM05D004138 ORTHO05D004898 7.6e-83 311.2 261 65.5
Potri.008G152701 Populus trichocarpa HOM05D004138 ORTHO05D004898 7.6e-83 311.2 195 79.5
Psat6g050360 Pisum sativum HOM05D004138 ORTHO05D004898 2.2e-82 309.7 166 89.8
SMO367G0933 Selaginella moellendorffii HOM05D004138 ORTHO05D004898 3.9e-79 298.9 225 68.0
COL.COLO4_04735 Corchorus olitorius HOM05D004138 ORTHO05D004898 8.7e-79 297.7 166 88.0
ClCG06G006210 Citrullus lanatus HOM05D004138 ORTHO05D004898 1.3e-77 293.9 258 63.6
Rhsim02G0024700 Rhododendron simsii HOM05D004138 ORTHO05D004898 1.6e-77 293.5 206 71.8
SGA_v2.0_scaffold20G09126 Striga asiatica HOM05D004138 ORTHO05D004898 1.3e-74 283.9 197 72.1
Cre02.g103850 Chlamydomonas reinhardtii HOM05D004138 ORTHO05D004898 8.5e-74 281.2 206 68.4
Oeu031232.1 Olea europaea HOM05D004138 ORTHO05D004898 1.1e-73 280.8 153 86.9
SGA_v2.0_scaffold10G05080 Striga asiatica HOM05D004138 ORTHO05D004898 1.2e-72 277.3 162 79.6
AL7G43460 Arabidopsis lyrata HOM05D004138 ORTHO05D004898 4.6e-72 275.4 159 87.4
Peaxi162Scf00092g01021 Petunia axillaris HOM05D004138 ORTHO05D004898 2.3e-71 273.1 208 69.7
Rhsim02G0025100 Rhododendron simsii HOM05D004138 ORTHO05D004898 6.7e-71 271.6 217 65.9
unitig_0.g724 Utricularia gibba HOM05D004952 ORTHO05D006131 6.7e-71 271.6 197 70.1
Rhsim02G0024200 Rhododendron simsii HOM05D004138 ORTHO05D004898 1.6e-69 266.9 151 84.8
Rhsim02G0025200 Rhododendron simsii HOM05D004138 ORTHO05D004898 3.7e-69 265.8 162 80.9
Rhsim02G0024800 Rhododendron simsii HOM05D004138 ORTHO05D004898 1.2e-67 260.8 158 79.1
HPP92_026352 Vanilla planifolia HOM05D004138 ORTHO05D004898 2.0e-67 260.0 201 67.2
SEGI_10012 Sequoiadendron giganteum HOM05D004138 ORTHO05D004898 4.5e-67 258.8 148 81.8
AL7G43530 Arabidopsis lyrata HOM05D004138 ORTHO05D004898 5.9e-67 258.5 149 85.9
MBI06_g37250_MAGBIO Magnolia biondii HOM05D004138 ORTHO05D004898 1.6e-64 250.4 211 64.5
Dinv13992 Davidia involucrata HOM05D004138 ORTHO05D004898 2.1e-64 250.0 184 71.7
MBI06_g26001_MAGBIO Magnolia biondii HOM05D004138 ORTHO05D004898 3.6e-64 249.2 244 57.8
Sabra10G0055200 Salix brachista HOM05D004138 ORTHO05D004898 2.3e-63 246.5 171 73.7
AagrBONN_evm.TU.Sc2ySwM_228.3076 Anthoceros agrestis HOM05D004138 ORTHO05D004898 5.0e-58 228.8 134 78.4
Lj2g0010828 Lotus japonicus HOM05D004138 ORTHO05D004898 8.5e-58 228.0 222 59.9
CDE10G0981 Ceratophyllum demersum HOM05D000366 ORTHO05D000437 9.4e-57 224.6 233 57.5
Haze_27397 Corylus avellana HOM05D004138 ORTHO05D004898 4.7e-56 222.2 236 45.8
arahy.Tifrunner.gnm1.ann1.PP7NHW Arachis hypogaea HOM05D004138 ORTHO05D004898 2.8e-53 213.0 155 73.5
Ah.04g154580 Amaranthus hybridus HOM05D004138 ORTHO05D004898 2.2e-50 203.4 132 76.5
ATR0661G018 Amborella trichopoda HOM05D004138 ORTHO05D004898 2.8e-45 186.4 140 67.1
Sabra08G0116300 Salix brachista HOM05D004138 ORTHO05D004898 1.4e-44 184.1 328 40.9
SHI00436 Sapria himalayana HOM05D004138 ORTHO05D004898 4.7e-40 169.1 180 53.9
PRCOL_00007017 Prasinoderma coloniale HOM05D004138 ORTHO05D004898 2.0e-38 163.7 188 43.6
MCO15G615 Micromonas commoda HOM05D004138 ORTHO05D004898 7.0e-36 155.2 200 40.0
Cfa024592 Carpinus fangiana HOM05D004138 ORTHO05D004898 3.2e-33 146.4 222 39.2
Actinidia40147 Actinidia chinensis HOM05D004138 ORTHO05D004898 5.7e-30 135.6 84 81.0
arahy.Tifrunner.gnm1.ann1.UX9Z2U Arachis hypogaea HOM05D004138 ORTHO05D004898 1.3e-21 107.8 62 80.6
arahy.Tifrunner.gnm1.ann1.J4BC6Z Arachis hypogaea HOM05D004138 ORTHO05D004898 6.4e-21 105.5 62 79.0
Psat4g223320 Pisum sativum HOM05D004138 ORTHO05D004898 3.9e-18 96.3 105 60.0
Medtr8g045710 Medicago truncatula HOM05D004138 ORTHO05D004898 5.0e-18 95.9 59 78.0
Rhsim02G0025000 Rhododendron simsii HOM05D004138 ORTHO05D004898 2.4e-12 77.0 41 87.8
CARHR221520 Cardamine hirsuta HOM05D004138 ORTHO05D004898 4.1e-12 76.3 52 76.9
AL5G12050 Arabidopsis lyrata HOM05D004138 ORTHO05D004898 1.7e-10 70.9 36 86.1
CSS0002625 Camellia sinensis var. sinensis HOM05D004138 ORTHO05D004898 3.9e-10 69.7 36 83.3
Medtr1g071390 Medicago truncatula HOM05D004138 ORTHO05D004898 6.6e-10 68.9 118 37.3
Rhsim04G0123400 Rhododendron simsii HOM05D007559 ORTHO05D009642 1.1e-09 68.2 39 82.1
Actinidia40148 Actinidia chinensis HOM05D004138 ORTHO05D004898 2.5e-09 67.0 50 66.0
arahy.Tifrunner.gnm1.ann1.RWV13Y Arachis hypogaea HOM05D000351 ORTHO05D018478 6.2e-08 62.4 32 87.5
CSS0029286 Camellia sinensis var. sinensis HOM05D004138 ORTHO05D004898 2.3e-07 60.5 42 64.3
CSS0040239 Camellia sinensis var. sinensis HOM05D004138 ORTHO05D004898 1.5e-06 57.8 34 73.5
Rhsim08G0128300 Rhododendron simsii HOM05D004138 ORTHO05D339665 4.4e-06 56.2 31 80.6


User provided reference genes

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