Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB06g26054 Brassica carinata HOM05D001049 ORTHO05D005951 8.9e-34 146.4 74 100.0
BcaC05g28235 Brassica carinata HOM05D001049 ORTHO05D005951 3.5e-30 134.4 70 97.1
C05p42860 Brassica napus HOM05D001049 ORTHO05D005951 3.5e-30 134.4 70 97.1
BolC5t33015H Brassica oleracea HOM05D001049 ORTHO05D005951 3.5e-30 134.4 70 97.1
BcaC01g04452 Brassica carinata HOM05D001049 ORTHO05D005951 1.0e-29 132.9 70 94.3
C03p40010 Brassica napus HOM05D001049 ORTHO05D005951 1.0e-29 132.9 70 94.3
A03p32880 Brassica napus HOM05D001049 ORTHO05D005951 1.7e-29 132.1 70 95.7
BolC3t16266H Brassica oleracea HOM05D001049 ORTHO05D005951 2.3e-29 131.7 70 94.3
BraA03t12457Z Brassica rapa HOM05D001049 ORTHO05D005951 1.1e-28 129.4 70 91.4
Carub.0003s2478 Capsella rubella HOM05D001049 ORTHO05D005951 1.5e-28 129.0 70 92.9
Thhalv10011322m.g Eutrema salsugineum HOM05D001049 ORTHO05D005951 1.9e-28 128.6 70 91.4
BcaC01g04542 Brassica carinata HOM05D001049 ORTHO05D005951 2.5e-28 128.3 70 92.9
AL3G11560 Arabidopsis lyrata HOM05D001049 ORTHO05D005951 5.6e-28 127.1 70 91.4
AL777U10010 Arabidopsis lyrata HOM05D001049 ORTHO05D012773 5.6e-28 127.1 70 91.4
Sp3g01340 Schrenkiella parvula HOM05D001049 ORTHO05D005951 5.6e-28 127.1 70 91.4
AT3G02280 Arabidopsis thaliana HOM05D001049 ORTHO05D005951 1.6e-27 125.6 71 91.5
Aa31LG5G12810 Aethionema arabicum HOM05D001049 ORTHO05D005951 1.4e-26 122.5 70 87.1
THA.LOC104820980 Tarenaya hassleriana HOM05D001049 ORTHO05D005951 9.9e-25 116.3 70 84.3
BcaB04g17099 Brassica carinata HOM05D001049 ORTHO05D005951 6.4e-24 113.6 71 84.5
BcaB06g26057 Brassica carinata HOM05D001049 ORTHO05D005951 6.4e-24 113.6 70 85.7
Manes.01G109200 Manihot esculenta HOM05D001049 ORTHO05D005951 9.3e-23 109.8 72 70.8
CAN.G625.5 Capsicum annuum HOM05D001049 ORTHO05D005951 1.2e-22 109.4 72 68.1
Actinidia15878 Actinidia chinensis HOM05D001049 ORTHO05D005951 1.6e-22 109.0 70 72.9
Potri.004G101100 Populus trichocarpa HOM05D001049 ORTHO05D005951 2.1e-22 108.6 72 70.8
PGSC0003DMG400012672 Solanum tuberosum HOM05D001049 ORTHO05D005951 2.1e-22 108.6 72 68.1
Nitab4.5_0005199g0010 Nicotiana tabacum HOM05D001049 ORTHO05D005951 2.7e-22 108.2 72 66.7
CSS0032537 Camellia sinensis var. sinensis HOM05D001049 ORTHO05D005951 3.5e-22 107.8 70 70.0
Dinv34836 Davidia involucrata HOM05D001049 ORTHO05D005951 3.5e-22 107.8 70 71.4
Solyc02g085820.3 Solanum lycopersicum HOM05D001049 ORTHO05D005951 6.0e-22 107.1 72 66.7
Eucgr.J01497 Eucalyptus grandis HOM05D001049 ORTHO05D005951 1.0e-21 106.3 69 71.0
Sopen02g030510 Solanum pennellii HOM05D001049 ORTHO05D005951 1.3e-21 105.9 72 66.7
Sabra04G0079000 Salix brachista HOM05D001049 ORTHO05D005951 2.3e-21 105.1 72 68.1
Cpa.g.sc179.5 Carica papaya HOM05D003845 ORTHO05D004161 3.0e-21 104.8 72 69.4
Lsat_1_v5_gn_9_32960 Lactuca sativa HOM05D001049 ORTHO05D005951 3.9e-21 104.4 70 70.0
vmacro05566 Vaccinium macrocarpon HOM05D001049 ORTHO05D005951 3.9e-21 104.4 70 70.0
DCAR_029530 Daucus carota HOM05D001049 ORTHO05D005951 6.6e-21 103.6 63 74.6
HanXRQChr12g0376471 Helianthus annuus HOM05D001049 ORTHO05D005951 6.6e-21 103.6 68 69.1
arahy.Tifrunner.gnm1.ann1.NBV3FR Arachis hypogaea HOM05D001049 ORTHO05D005951 8.7e-21 103.2 73 69.9
arahy.Tifrunner.gnm1.ann1.YPBB19 Arachis hypogaea HOM05D001049 ORTHO05D005951 8.7e-21 103.2 73 69.9
Hma1.2p1_0550F.1_g177330 Hydrangea macrophylla HOM05D001049 ORTHO05D005951 8.7e-21 103.2 70 65.7
TAR629G0236 Trochodendron aralioides HOM05D001049 ORTHO05D005951 8.7e-21 103.2 70 65.7
Duzib150G0039 Durio zibethinus HOM05D001049 ORTHO05D005951 1.5e-20 102.4 72 69.4
Lj4C194T12 Lonicera japonica HOM05D001049 ORTHO05D005951 1.5e-20 102.4 70 70.0
Glyma.18G297800 Glycine max HOM05D001049 ORTHO05D005951 1.9e-20 102.1 67 70.1
RcHm_v2.0_Chr2g0162931 Rosa chinensis HOM05D001049 ORTHO05D005951 1.9e-20 102.1 72 65.3
GSVIVG01031054001 Vitis vinifera HOM05D001049 ORTHO05D005951 1.9e-20 102.1 71 70.4
Thecc.09G259800 Theobroma cacao HOM05D001049 ORTHO05D005951 2.5e-20 101.7 69 71.0
Aqoxy3G03945 Aquilegia oxysepala HOM05D001049 ORTHO05D005951 3.3e-20 101.3 70 64.3
DCAR_029529 Daucus carota HOM05D001049 ORTHO05D005951 4.3e-20 100.9 66 68.2
FAN05G1438 Fragaria x ananassa HOM05D001049 ORTHO05D005951 5.6e-20 100.5 72 65.3
Lj1g0028233 Lotus japonicus HOM05D001049 ORTHO05D005951 5.6e-20 100.5 70 64.3
PSO782G4668 Papaver somniferum HOM05D001049 ORTHO05D005951 7.3e-20 100.1 72 65.3
Prupe.3G238300 Prunus persica HOM05D001049 ORTHO05D005951 7.3e-20 100.1 70 64.3
AUR62008979 Chenopodium quinoa HOM05D001049 ORTHO05D005951 9.6e-20 99.8 70 67.1
Ciclev10000583m.g Citrus clementina HOM05D001049 ORTHO05D005951 9.6e-20 99.8 70 64.3
FvH4_6g45220 Fragaria vesca HOM05D001049 ORTHO05D005951 9.6e-20 99.8 72 63.9
FAN14G1155 Fragaria x ananassa HOM05D001049 ORTHO05D005951 9.6e-20 99.8 72 63.9
Sed0012519 Sechium edule HOM05D001049 ORTHO05D005951 9.6e-20 99.8 68 69.1
Hund13726 Selenicereus undatus HOM05D001049 ORTHO05D005951 1.3e-19 99.4 70 65.7
TWI74G0592 Tripterygium wilfordii HOM05D001049 ORTHO05D005951 1.3e-19 99.4 70 65.7
Sc11g0008260 Simmondsia chinensis HOM05D001049 ORTHO05D005951 1.6e-19 99.0 71 63.4
BcaB07g33014 Brassica carinata HOM05D001049 ORTHO05D005951 2.1e-19 98.6 60 85.0
Atru.chr7.1178 Acer truncatum HOM05D001049 ORTHO05D005951 2.8e-19 98.2 64 70.3
PSO566G0159 Papaver somniferum HOM05D001049 ORTHO05D005951 2.8e-19 98.2 67 68.7
Ca_04065_v3 Cicer arietinum L. HOM05D001049 ORTHO05D005951 3.6e-19 97.8 70 64.3
Psat3g206240 Pisum sativum HOM05D001049 ORTHO05D005951 3.6e-19 97.8 70 64.3
MBI19_g21650_MAGBIO Magnolia biondii HOM05D001049 ORTHO05D005951 4.8e-19 97.4 63 74.6
COL.COLO4_25242 Corchorus olitorius HOM05D001049 ORTHO05D005951 6.2e-19 97.1 72 65.3
Migut.L00308 Erythranthe guttata HOM05D001049 ORTHO05D005951 8.1e-19 96.7 68 67.6
PGR042G0664 Punica granatum HOM05D001049 ORTHO05D005951 8.1e-19 96.7 73 64.4
CsaV3_4G004300 Cucumis sativus L. HOM05D001049 ORTHO05D005951 1.1e-18 96.3 68 64.7
FAN02G0215 Fragaria x ananassa HOM05D001049 ORTHO05D005951 1.1e-18 96.3 72 61.1
Lj6g0018247 Lotus japonicus HOM05D001049 ORTHO05D005951 1.1e-18 96.3 70 62.9
TPR.G9733 Trifolium pratense HOM05D001049 ORTHO05D005951 1.1e-18 96.3 68 64.7
VMungo1383G0137 Vigna mungo HOM05D001049 ORTHO05D005951 1.1e-18 96.3 66 65.2
MELO3C017636.2 Cucumis melo HOM05D001049 ORTHO05D005951 1.4e-18 95.9 68 64.7
Medtr7g406970 Medicago truncatula HOM05D001049 ORTHO05D005951 1.4e-18 95.9 70 61.4
SGA_v2.0_scaffold114G32024 Striga asiatica HOM05D001049 ORTHO05D005951 1.4e-18 95.9 67 65.7
EL10Ac2g04590 Beta vulgaris HOM05D001049 ORTHO05D005951 1.8e-18 95.5 66 66.7
Nn3g17797 Nelumbo nucifera HOM05D001049 ORTHO05D005951 1.8e-18 95.5 70 61.4
Cc07_g08880 Coffea canephora HOM05D001049 ORTHO05D005951 2.4e-18 95.1 68 61.8
Medtr1g102950 Medicago truncatula HOM05D001049 ORTHO05D005951 2.4e-18 95.1 66 66.7
Gohir.A07G116600 Gossypium hirsutum HOM05D001049 ORTHO05D005951 3.1e-18 94.7 72 62.5
Gohir.D07G121000 Gossypium hirsutum HOM05D001049 ORTHO05D005951 3.1e-18 94.7 72 62.5
MD09G1087200 Malus domestica HOM05D001049 ORTHO05D005951 4.0e-18 94.4 66 63.6
SalBow5G3175 Salvia bowleyana HOM05D001049 ORTHO05D005951 4.0e-18 94.4 71 62.0
Gorai.001G130600 Gossypium raimondii HOM05D001049 ORTHO05D005951 5.3e-18 94.0 72 62.5
Ah.10g037600 Amaranthus hybridus HOM05D001049 ORTHO05D005951 6.9e-18 93.6 68 64.7
ECA236G0274 Erigeron canadensis HOM05D001049 ORTHO05D005951 1.2e-17 92.8 70 64.3
MD09G1086400 Malus domestica HOM05D001049 ORTHO05D005951 1.2e-17 92.8 69 59.4
CANSAT64G1724 Cannabis sativa HOM05D001049 ORTHO05D005951 2.6e-17 91.7 70 62.9
Phvul.008G004800 Phaseolus vulgaris HOM05D001049 ORTHO05D005951 2.6e-17 91.7 66 62.1
Lj6g0008823 Lotus japonicus HOM05D001049 ORTHO05D005951 4.5e-17 90.9 64 65.6
CAN.G852.5 Capsicum annuum HOM05D001049 ORTHO05D005951 1.7e-16 89.0 63 65.1
Os01g0733600 Oryza sativa ssp. japonica HOM05D001049 ORTHO05D005951 1.7e-16 89.0 67 64.2
DCAR_019602 Daucus carota HOM05D001049 ORTHO05D005951 4.9e-16 87.4 69 60.9
HPP92_005481 Vanilla planifolia HOM05D001049 ORTHO05D005951 4.9e-16 87.4 68 63.2
CDE05G2137 Ceratophyllum demersum HOM05D001049 ORTHO05D005951 6.4e-16 87.0 72 61.1
Hma1.2p1_3581F.1_g336840 Hydrangea macrophylla HOM05D001049 ORTHO05D005951 8.4e-16 86.7 70 61.4
BolC8t47349H Brassica oleracea HOM05D001049 ORTHO05D005951 1.9e-15 85.5 47 87.2
Peaxi162Scf00814g00241 Petunia axillaris HOM05D001049 ORTHO05D005951 1.9e-15 85.5 60 63.3
AUR62014524 Chenopodium quinoa HOM05D001049 ORTHO05D005951 1.2e-14 82.8 70 61.4
Lj1g0012839 Lotus japonicus HOM05D001049 ORTHO05D005951 1.6e-14 82.4 70 55.7
Lalb_Chr10g0091161 Lupinus albus HOM05D001049 ORTHO05D005951 2.1e-14 82.0 69 56.5
FAN14G2476 Fragaria x ananassa HOM05D001049 ORTHO05D005951 6.0e-14 80.5 55 67.3
BcaB08g34532 Brassica carinata HOM05D001049 ORTHO05D005951 7.9e-14 80.1 48 85.4
SMO367G1106 Selaginella moellendorffii HOM05D001049 ORTHO05D005951 1.8e-13 79.0 68 55.9
Mapoly0012s0011 Marchantia polymorpha HOM05D001049 ORTHO05D005951 4.3e-12 74.3 67 56.7
Pp3c9_18000 Physcomitrium patens HOM05D001049 ORTHO05D005951 5.6e-12 73.9 72 55.6
Cre12.g551850 Chlamydomonas reinhardtii HOM05D001049 ORTHO05D005951 1.3e-11 72.8 65 55.4
Zm00001eb154050 Zea mays HOM05D001049 ORTHO05D005951 4.8e-11 70.9 54 64.8
AagrBONN_evm.TU.Sc2ySwM_340.441 Anthoceros agrestis HOM05D001049 ORTHO05D005951 8.1e-11 70.1 72 45.8
TAR371G1234 Trochodendron aralioides HOM05D001049 ORTHO05D005951 8.1e-11 70.1 44 72.7
TAR183G0004 Trochodendron aralioides HOM05D001049 ORTHO05D005951 2.4e-10 68.6 50 62.0
MCO06G260 Micromonas commoda HOM05D001049 ORTHO05D005951 4.9e-08 60.8 65 55.4
SHI03727 Sapria himalayana HOM05D001049 ORTHO05D005951 1.4e-07 59.3 48 58.3
GSVIVG01014385001 Vitis vinifera HOM05D001049 ORTHO05D005951 3.2e-07 58.2 41 58.5
MD09G1086700 Malus domestica HOM05D001049 ORTHO05D005951 2.7e-06 55.1 79 40.5
Cfa022271 Carpinus fangiana HOM05D004275 ORTHO05D005720 6.0e-06 53.9 64 37.5
AagrBONN_evm.TU.Sc2ySwM_228.1703 Anthoceros agrestis HOM05D001049 ORTHO05D021258 7.9e-06 53.5 70 41.4


User provided reference genes

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