Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB06g25834 Brassica carinata HOM05D006316 ORTHO05D008032 3.6e-132 474.9 241 100.0
BcaC05g28772 Brassica carinata HOM05D006316 ORTHO05D008032 2.4e-128 462.2 241 96.7
C05p48790 Brassica napus HOM05D006316 ORTHO05D008032 3.5e-127 458.4 241 95.9
BolC5t33616H Brassica oleracea HOM05D006316 ORTHO05D008032 3.5e-127 458.4 241 95.9
A05p32260 Brassica napus HOM05D006316 ORTHO05D008032 1.7e-126 456.1 241 97.1
BraA05t22055Z Brassica rapa HOM05D006316 ORTHO05D008032 5.0e-126 454.5 241 96.7
Sp3g15720 Schrenkiella parvula HOM05D006316 ORTHO05D008032 2.5e-125 452.2 241 93.8
Thhalv10021423m.g Eutrema salsugineum HOM05D006316 ORTHO05D008032 1.2e-124 449.9 241 92.1
Carub.0003s1730 Capsella rubella HOM05D006316 ORTHO05D008032 2.1e-124 449.1 241 92.9
CARHR092900 Cardamine hirsuta HOM05D006316 ORTHO05D008032 1.0e-123 446.8 241 92.1
AT3G17590 Arabidopsis thaliana HOM05D006316 ORTHO05D008032 1.2e-122 443.4 241 91.7
AL3G30660 Arabidopsis lyrata HOM05D006316 ORTHO05D008032 3.4e-122 441.8 241 91.3
Aa31LG8G4460 Aethionema arabicum HOM05D006316 ORTHO05D008032 3.1e-120 435.3 241 88.4
arahy.Tifrunner.gnm1.ann1.NEV66G Arachis hypogaea HOM05D006316 ORTHO05D008032 2.6e-106 389.0 241 78.4
arahy.Tifrunner.gnm1.ann1.ZN6V8N Arachis hypogaea HOM05D006316 ORTHO05D008032 2.6e-106 389.0 241 78.4
CsaV3_3G015610 Cucumis sativus L. HOM05D006316 ORTHO05D008032 5.7e-106 387.9 241 79.3
MELO3C006760.2 Cucumis melo HOM05D006316 ORTHO05D008032 1.3e-105 386.7 241 78.8
QL06p014723 Quercus lobata HOM05D006316 ORTHO05D008032 1.7e-105 386.3 240 77.1
VMungo1215G0091 Vigna mungo HOM05D006316 ORTHO05D008032 1.7e-105 386.3 241 78.0
Glyma.13G117200 Glycine max HOM05D006316 ORTHO05D008032 2.9e-105 385.6 241 78.0
CiPaw.01G127100 Carya illinoinensis HOM05D006316 ORTHO05D008032 4.9e-105 384.8 241 78.4
Phvul.003G124500 Phaseolus vulgaris HOM05D006316 ORTHO05D008032 1.1e-104 383.6 241 76.8
PGR031G3724 Punica granatum HOM05D006316 ORTHO05D008032 1.1e-104 383.6 241 76.8
Sed0018318 Sechium edule HOM05D006316 ORTHO05D008032 1.4e-104 383.3 241 77.6
GSVIVG01017710001 Vitis vinifera HOM05D006316 ORTHO05D008032 1.4e-104 383.3 240 76.7
Lj4g0011706 Lotus japonicus HOM05D006316 ORTHO05D008032 1.8e-104 382.9 241 77.6
Gohir.D05G000900 Gossypium hirsutum HOM05D006316 ORTHO05D008032 7.0e-104 380.9 241 75.5
Gorai.009G000800 Gossypium raimondii HOM05D006316 ORTHO05D008032 7.0e-104 380.9 241 75.5
ClCG05G006940 Citrullus lanatus HOM05D006316 ORTHO05D008032 1.2e-103 380.2 253 75.5
Medtr4g124260 Medicago truncatula HOM05D006316 ORTHO05D008032 1.6e-103 379.8 241 75.5
Duzib128G0584 Durio zibethinus HOM05D006316 ORTHO05D008032 2.0e-103 379.4 241 74.3
Gohir.A05G000600 Gossypium hirsutum HOM05D006316 ORTHO05D008032 3.5e-103 378.6 241 75.1
Manes.05G122900 Manihot esculenta HOM05D006316 ORTHO05D008032 5.9e-103 377.9 241 76.8
THA.LOC104826519 Tarenaya hassleriana HOM05D006316 ORTHO05D008032 5.9e-103 377.9 210 87.6
Atru.chr4.3188 Acer truncatum HOM05D006316 ORTHO05D008032 7.8e-103 377.5 241 74.7
DCAR_002560 Daucus carota HOM05D006316 ORTHO05D008032 7.8e-103 377.5 230 77.8
CSS0037556 Camellia sinensis var. sinensis HOM05D006316 ORTHO05D008032 3.0e-102 375.6 237 75.1
Eucgr.B02199 Eucalyptus grandis HOM05D006316 ORTHO05D008032 5.0e-102 374.8 241 74.7
Potri.010G004100 Populus trichocarpa HOM05D006316 ORTHO05D008032 6.6e-102 374.4 241 77.2
CSS0049495 Camellia sinensis var. sinensis HOM05D006316 ORTHO05D008032 1.5e-101 373.2 237 74.7
CAN.G255.2 Capsicum annuum HOM05D006316 ORTHO05D008032 1.5e-101 373.2 238 75.2
Ciclev10005749m.g Citrus clementina HOM05D006316 ORTHO05D008032 2.5e-101 372.5 241 73.9
SalBow7G1663 Salvia bowleyana HOM05D006316 ORTHO05D008032 2.5e-101 372.5 232 75.9
TWI74G1230 Tripterygium wilfordii HOM05D006316 ORTHO05D008032 5.6e-101 371.3 241 75.1
Cc07_g19930 Coffea canephora HOM05D006316 ORTHO05D008032 7.3e-101 370.9 237 75.1
Lalb_Chr12g0200491 Lupinus albus HOM05D006316 ORTHO05D008032 7.3e-101 370.9 247 74.1
COL.COLO4_13438 Corchorus olitorius HOM05D006316 ORTHO05D008032 9.5e-101 370.5 236 73.7
Nn4g25293 Nelumbo nucifera HOM05D006316 ORTHO05D008032 2.1e-100 369.4 241 72.6
Actinidia24554 Actinidia chinensis HOM05D006316 ORTHO05D008032 3.6e-100 368.6 238 74.4
Migut.B00749 Erythranthe guttata HOM05D006316 ORTHO05D008032 4.7e-100 368.2 232 76.3
Peaxi162Scf00571g00412 Petunia axillaris HOM05D006316 ORTHO05D008032 6.2e-100 367.9 242 74.0
Sopen11g008410 Solanum pennellii HOM05D006316 ORTHO05D008032 8.0e-100 367.5 238 75.2
Lj6A704G50 Lonicera japonica HOM05D006316 ORTHO05D008032 1.4e-99 366.7 241 71.8
Haze_00749 Corylus avellana HOM05D006316 ORTHO05D008032 1.8e-99 366.3 221 79.2
Gohir.A09G135800 Gossypium hirsutum HOM05D006316 ORTHO05D008032 1.8e-99 366.3 237 73.0
MSTRG.20325 Avicennia marina HOM05D006316 ORTHO05D008032 3.1e-99 365.5 232 73.7
Hund12266 Selenicereus undatus HOM05D006316 ORTHO05D008032 3.1e-99 365.5 241 73.9
CANSAT56G2492 Cannabis sativa HOM05D006316 ORTHO05D008032 8.9e-99 364.0 243 73.7
Ah.07g202850 Amaranthus hybridus HOM05D006316 ORTHO05D008032 7.5e-98 360.9 241 71.0
Lsat_1_v5_gn_6_117760 Lactuca sativa HOM05D006316 ORTHO05D008032 9.8e-98 360.5 229 73.4
AUR62002525 Chenopodium quinoa HOM05D006316 ORTHO05D008032 1.7e-97 359.8 241 71.4
EL10Ac3g06220 Beta vulgaris HOM05D006316 ORTHO05D008032 2.2e-97 359.4 241 71.4
Nitab4.5_0000051g0260 Nicotiana tabacum HOM05D006316 ORTHO05D008032 2.2e-97 359.4 237 73.4
MD13G1137100 Malus domestica HOM05D006316 ORTHO05D008032 4.9e-97 358.2 241 70.1
TPR.G12708 Trifolium pratense HOM05D006316 ORTHO05D008032 4.9e-97 358.2 223 76.7
Nitab4.5_0004737g0050 Nicotiana tabacum HOM05D006316 ORTHO05D008032 4.1e-96 355.1 237 72.6
Gohir.D09G137500 Gossypium hirsutum HOM05D006316 ORTHO05D008032 1.2e-95 353.6 260 66.9
ECA246G2315 Erigeron canadensis HOM05D006316 ORTHO05D008032 2.7e-95 352.4 224 76.8
PSO210G4075 Papaver somniferum HOM05D006316 ORTHO05D008032 2.7e-95 352.4 229 74.2
TAR365G1184 Trochodendron aralioides HOM05D006316 ORTHO05D008032 2.7e-95 352.4 264 66.7
unitig_578.g15959 Utricularia gibba HOM05D006316 ORTHO05D008032 7.8e-95 350.9 246 71.1
PSO761G0163 Papaver somniferum HOM05D006316 ORTHO05D008032 1.0e-94 350.5 229 73.4
SGA_v2.0_scaffold131G34373 Striga asiatica HOM05D006316 ORTHO05D008032 2.3e-94 349.4 262 66.8
HanXRQChr05g0148931 Helianthus annuus HOM05D006316 ORTHO05D008032 3.0e-94 349.0 229 73.8
Aqoxy2G02444 Aquilegia oxysepala HOM05D006316 ORTHO05D008032 3.9e-94 348.6 229 70.7
vmacro04190 Vaccinium macrocarpon HOM05D006316 ORTHO05D008032 3.9e-94 348.6 261 65.1
Thecc.03G258800 Theobroma cacao HOM05D006316 ORTHO05D008032 1.2e-92 343.6 241 70.1
Psat4g020720 Pisum sativum HOM05D006316 ORTHO05D008032 1.6e-92 343.2 241 71.0
CDE12G0513 Ceratophyllum demersum HOM05D006316 ORTHO05D008032 2.1e-92 342.8 240 66.7
ATR0796G033 Amborella trichopoda HOM05D006316 ORTHO05D008032 3.6e-92 342.0 236 67.4
Cfa015754 Carpinus fangiana HOM05D006316 ORTHO05D008032 4.7e-92 341.7 209 77.5
RcHm_v2.0_Chr4g0428001 Rosa chinensis HOM05D006316 ORTHO05D008032 4.7e-92 341.7 233 73.0
FvH4_4g21770 Fragaria vesca HOM05D006316 ORTHO05D008032 1.8e-91 339.7 233 72.5
Sabra10G0003500 Salix brachista HOM05D006316 ORTHO05D008032 2.3e-91 339.3 282 64.2
FAN17G2953 Fragaria x ananassa HOM05D006316 ORTHO05D008032 5.2e-91 338.2 233 72.1
CSS0010190 Camellia sinensis var. sinensis HOM05D006316 ORTHO05D008032 2.6e-90 335.9 234 69.7
Sopen11g008420 Solanum pennellii HOM05D006316 ORTHO05D008032 9.8e-90 334.0 238 69.3
FAN12G0215 Fragaria x ananassa HOM05D006316 ORTHO05D008032 1.2e-87 327.0 255 66.3
FAN07G2419 Fragaria x ananassa HOM05D006316 ORTHO05D008032 3.9e-86 322.0 264 63.6
Gorai.006G157900 Gossypium raimondii HOM05D006316 ORTHO05D008032 1.1e-83 313.9 232 66.4
Prupe.1G208100 Prunus persica HOM05D006316 ORTHO05D008032 2.3e-78 296.2 196 73.5
Solyc11g013400.3 Solanum lycopersicum HOM05D006316 ORTHO05D008032 4.3e-77 292.0 196 73.5
Zm00001eb354530 Zea mays HOM05D006316 ORTHO05D008032 5.6e-77 291.6 221 62.9
Os02g0723700 Oryza sativa ssp. japonica HOM05D006316 ORTHO05D008032 7.3e-77 291.2 226 61.9
Dinv32178 Davidia involucrata HOM05D006316 ORTHO05D008032 4.4e-74 282.0 239 60.3
Rhsim13G0235700 Rhododendron simsii HOM05D006316 ORTHO05D008032 4.4e-74 282.0 275 54.5
SHI09041 Sapria himalayana HOM05D006316 ORTHO05D008032 9.9e-74 280.8 211 64.5
TAR362G1307 Trochodendron aralioides HOM05D006316 ORTHO05D008032 1.7e-73 280.0 229 61.1
Sc19g0002500 Simmondsia chinensis HOM05D006316 ORTHO05D008032 3.5e-71 272.3 177 74.0
Mapoly0059s0054 Marchantia polymorpha HOM05D006316 ORTHO05D008032 8.7e-70 267.7 230 56.5
AUR62023666 Chenopodium quinoa HOM05D006316 ORTHO05D008032 1.5e-69 266.9 306 48.0
Rhsim04G0168500 Rhododendron simsii HOM05D006316 ORTHO05D008032 2.4e-64 249.6 194 65.5
HPP92_002633 Vanilla planifolia HOM05D006316 ORTHO05D008032 3.2e-64 249.2 160 71.9
Lj2g0021665 Lotus japonicus HOM05D006316 ORTHO05D008032 6.0e-63 245.0 200 62.5
AagrBONN_evm.TU.Sc2ySwM_228.3212 Anthoceros agrestis HOM05D006316 ORTHO05D008032 2.3e-62 243.0 225 54.2
SMO358G0571 Selaginella moellendorffii HOM05D006316 ORTHO05D008032 2.3e-62 243.0 220 52.3
LjContig00575g0004232 Lotus japonicus HOM05D006316 ORTHO05D008032 2.5e-61 239.6 184 64.7
LjContig00576g0014419 Lotus japonicus HOM05D006316 ORTHO05D008032 2.5e-61 239.6 184 64.7
Lj2g0021371 Lotus japonicus HOM05D006316 ORTHO05D008032 1.4e-59 233.8 192 62.5
Rhsim04G0168300 Rhododendron simsii HOM05D006316 ORTHO05D008032 2.3e-54 216.5 194 59.8
CBR_g38190 Chara braunii HOM05D006316 ORTHO05D008032 2.5e-53 213.0 221 48.9
Ca_21361_v3 Cicer arietinum L. HOM05D006316 ORTHO05D008032 7.4e-45 184.9 123 74.8
SEGI_01321 Sequoiadendron giganteum HOM05D006316 ORTHO05D008032 6.9e-43 178.3 123 69.9
Glyma.09G159500 Glycine max HOM05D006316 ORTHO05D008032 2.4e-35 153.3 164 51.2
PGSC0003DMG400027786 Solanum tuberosum HOM05D006316 ORTHO05D008032 2.5e-32 143.3 122 61.5
Glyma.17G042702 Glycine max HOM05D006316 ORTHO05D008032 2.8e-28 129.8 78 75.6
CSS0015998 Camellia sinensis var. sinensis HOM05D006316 ORTHO05D008032 2.6e-26 123.2 93 66.7
Solyc11g013410.2 Solanum lycopersicum HOM05D006316 ORTHO05D008032 8.5e-25 118.2 90 64.4
MBI18_g03841_MAGBIO Magnolia biondii HOM05D006046 ORTHO05D007580 3.2e-24 116.3 71 70.4
Cpa.g.sc146.8 Carica papaya HOM05D006316 ORTHO05D008032 9.4e-24 114.8 61 82.0
Cpa.g.c44700 Carica papaya HOM05D006316 ORTHO05D008032 2.0e-21 107.1 55 85.5
DCAR_030416 Daucus carota HOM05D006316 ORTHO05D008032 5.3e-19 99.0 115 53.9
Cfa025220 Carpinus fangiana HOM05D006316 ORTHO05D008032 7.2e-16 88.6 152 34.9
Oeu020629.4 Olea europaea HOM05D002546 ORTHO05D002671 3.3e-13 79.7 69 65.2
RcHm_v2.0_Chr5g0025761 Rosa chinensis HOM05D006316 ORTHO05D008032 1.3e-09 67.8 70 52.9
BolC1t04635H Brassica oleracea HOM05D034232 ORTHO05D033735 6.8e-06 55.5 35 77.1


User provided reference genes

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