Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB06g25810 Brassica carinata HOM05D006827 ORTHO05D023991 6.7e-45 183.7 98 100.0
BcaC09g48673 Brassica carinata HOM05D006827 ORTHO05D008725 2.6e-17 92.0 67 82.1
C01p47070 Brassica napus HOM05D006827 ORTHO05D008725 2.6e-17 92.0 67 82.1
BolC1t04673H Brassica oleracea HOM05D006827 ORTHO05D008725 2.6e-17 92.0 67 82.1
BcaC09g48674 Brassica carinata HOM05D006827 ORTHO05D008725 6.5e-16 87.4 64 81.2
Thhalv10021204m.g Eutrema salsugineum HOM05D006827 ORTHO05D008725 2.5e-15 85.5 67 79.1
AT3G17170 Arabidopsis thaliana HOM05D006827 ORTHO05D008725 1.5e-12 76.3 77 64.9
Aa31LG8G4170 Aethionema arabicum HOM05D006827 ORTHO05D008725 4.4e-12 74.7 42 85.7
Carub.0003s1692 Capsella rubella HOM05D006827 ORTHO05D008725 9.8e-12 73.6 76 64.5
PSO210G0119 Papaver somniferum HOM05D006827 ORTHO05D008725 1.4e-10 69.7 41 75.6
BcaB04g20857 Brassica carinata HOM05D006827 ORTHO05D008725 1.8e-10 69.3 39 84.6
PSO761G0463 Papaver somniferum HOM05D006827 ORTHO05D008725 1.8e-10 69.3 41 75.6
Sp3g15370 Schrenkiella parvula HOM05D006827 ORTHO05D008725 2.4e-10 68.9 67 64.2
A01p37130 Brassica napus HOM05D006827 ORTHO05D008725 3.1e-10 68.6 35 85.7
BraA01t03774Z Brassica rapa HOM05D006827 ORTHO05D008725 3.1e-10 68.6 35 85.7
QL03p023650 Quercus lobata HOM05D006827 ORTHO05D008725 4.1e-10 68.2 42 71.4
QL06p013028 Quercus lobata HOM05D006827 ORTHO05D008725 4.1e-10 68.2 42 71.4
GSVIVG01034952001 Vitis vinifera HOM05D006827 ORTHO05D008725 4.1e-10 68.2 42 71.4
AL3G30170 Arabidopsis lyrata HOM05D006827 ORTHO05D008725 9.1e-10 67.0 77 59.7
TWI53G1816 Tripterygium wilfordii HOM05D006827 ORTHO05D008725 1.2e-09 66.6 61 55.7
TAR365G1248 Trochodendron aralioides HOM05D006827 ORTHO05D008725 1.2e-09 66.6 38 76.3
CANSAT78G0077 Cannabis sativa HOM05D006827 ORTHO05D008725 1.6e-09 66.2 35 80.0
Dinv15137 Davidia involucrata HOM05D006827 ORTHO05D008725 1.6e-09 66.2 66 53.0
Nn3g21791 Nelumbo nucifera HOM05D006827 ORTHO05D008725 1.6e-09 66.2 76 48.7
Glyma.15G137900 Glycine max HOM05D006827 ORTHO05D008725 2.0e-09 65.9 38 73.7
Ah.13g071520 Amaranthus hybridus HOM05D006827 ORTHO05D008725 2.7e-09 65.5 66 56.1
Phvul.006G120200 Phaseolus vulgaris HOM05D006827 ORTHO05D008725 2.7e-09 65.5 54 59.3
Manes.03G207700 Manihot esculenta HOM05D006827 ORTHO05D008725 4.5e-09 64.7 42 66.7
Haze_01351 Corylus avellana HOM05D002153 ORTHO05D002137 5.9e-09 64.3 58 56.9
arahy.Tifrunner.gnm1.ann1.25F6GK Arachis hypogaea HOM05D006827 ORTHO05D008725 7.7e-09 63.9 58 58.6
arahy.Tifrunner.gnm1.ann1.7T6EZL Arachis hypogaea HOM05D006827 ORTHO05D008725 7.7e-09 63.9 58 58.6
arahy.Tifrunner.gnm1.ann1.GV6LK0 Arachis hypogaea HOM05D006827 ORTHO05D008725 7.7e-09 63.9 58 58.6
arahy.Tifrunner.gnm1.ann1.W8AIPN Arachis hypogaea HOM05D006827 ORTHO05D008725 7.7e-09 63.9 58 58.6
MSTRG.3845 Avicennia marina HOM05D006827 ORTHO05D008725 7.7e-09 63.9 35 77.1
CARHR092440 Cardamine hirsuta HOM05D006827 ORTHO05D008725 7.7e-09 63.9 30 93.3
Cfa015277 Carpinus fangiana HOM05D006827 ORTHO05D008725 7.7e-09 63.9 38 71.1
ClCG06G004410 Citrullus lanatus HOM05D006827 ORTHO05D008725 7.7e-09 63.9 43 65.1
Cc03_g00540 Coffea canephora HOM05D006827 ORTHO05D008725 7.7e-09 63.9 64 53.1
Thecc.04G305900 Theobroma cacao HOM05D006827 ORTHO05D008725 7.7e-09 63.9 42 66.7
EL10Ac3g05552 Beta vulgaris HOM05D006827 ORTHO05D008725 1.0e-08 63.5 35 77.1
CiPaw.01G134600 Carya illinoinensis HOM05D006827 ORTHO05D008725 1.0e-08 63.5 72 47.2
Ciclev10005460m.g Citrus clementina HOM05D006827 ORTHO05D008725 1.0e-08 63.5 42 64.3
MBI18_g27379_MAGBIO Magnolia biondii HOM05D006827 ORTHO05D008725 1.0e-08 63.5 64 51.6
Potri.008G101900 Populus trichocarpa HOM05D006827 ORTHO05D008725 1.0e-08 63.5 88 43.2
AUR62016245 Chenopodium quinoa HOM05D002153 ORTHO05D002137 1.7e-08 62.8 35 74.3
VMungo0540G1290 Vigna mungo HOM05D006827 ORTHO05D008725 1.7e-08 62.8 38 71.1
Gohir.A10G174600 Gossypium hirsutum HOM05D006827 ORTHO05D008725 2.2e-08 62.4 42 66.7
Prupe.1G113000 Prunus persica HOM05D006827 ORTHO05D008725 2.9e-08 62.0 67 53.7
ECA246G4663 Erigeron canadensis HOM05D002153 ORTHO05D002137 3.8e-08 61.6 37 70.3
THA.LOC104820318 Tarenaya hassleriana HOM05D006827 ORTHO05D008725 3.8e-08 61.6 41 70.7
MELO3C021255.2 Cucumis melo HOM05D006827 ORTHO05D008725 5.0e-08 61.2 36 69.4
DCAR_023373 Daucus carota HOM05D006827 ORTHO05D008725 5.0e-08 61.2 30 86.7
Gohir.D10G181100 Gossypium hirsutum HOM05D006827 ORTHO05D008725 5.0e-08 61.2 42 64.3
Gorai.011G202600 Gossypium raimondii HOM05D006827 ORTHO05D008725 5.0e-08 61.2 42 64.3
Glyma.09G032900 Glycine max HOM05D001281 ORTHO05D008725 6.5e-08 60.8 35 71.4
Hma1.2p1_0516F.1_g170510 Hydrangea macrophylla HOM05D006827 ORTHO05D008725 8.5e-08 60.5 34 76.5
FAN07G0118 Fragaria x ananassa HOM05D006827 ORTHO05D008725 1.1e-07 60.1 42 64.3
Lj6g0001147 Lotus japonicus HOM05D001281 ORTHO05D001139 1.1e-07 60.1 77 55.8
Sabra08G0077100 Salix brachista HOM05D006827 ORTHO05D007631 1.1e-07 60.1 38 65.8
Sed0009970 Sechium edule HOM05D006827 ORTHO05D008725 1.1e-07 60.1 43 58.1
TWI09G0591 Tripterygium wilfordii HOM05D006827 ORTHO05D008725 1.1e-07 60.1 71 49.3
Lsat_1_v5_gn_6_116121 Lactuca sativa HOM05D006827 ORTHO05D008725 1.5e-07 59.7 35 68.6
Zm00001eb136900 Zea mays HOM05D006827 ORTHO05D008725 1.5e-07 59.7 75 40.0
Actinidia31567 Actinidia chinensis HOM05D006827 ORTHO05D008725 1.9e-07 59.3 43 62.8
ATR1120G107 Amborella trichopoda HOM05D006827 ORTHO05D008725 1.9e-07 59.3 62 50.0
Nitab4.5_0002421g0010 Nicotiana tabacum HOM05D006827 ORTHO05D008725 1.9e-07 59.3 74 44.6
HPP92_027958 Vanilla planifolia HOM05D006827 ORTHO05D008725 1.9e-07 59.3 41 61.0
CAN.G582.1 Capsicum annuum HOM05D006827 ORTHO05D008725 2.5e-07 58.9 63 61.9
Hma1.2p1_0013F.1_g008250 Hydrangea macrophylla HOM05D006827 ORTHO05D008725 2.5e-07 58.9 35 71.4
Nitab4.5_0004047g0010 Nicotiana tabacum HOM05D006827 ORTHO05D008725 2.5e-07 58.9 72 54.2
Os12g0563200 Oryza sativa ssp. japonica HOM05D006827 ORTHO05D008725 2.5e-07 58.9 77 40.3
Sc25g0003190 Simmondsia chinensis HOM05D006827 ORTHO05D008725 2.5e-07 58.9 46 65.2
Solyc01g058190.4 Solanum lycopersicum HOM05D006827 ORTHO05D008725 2.5e-07 58.9 63 49.2
RcHm_v2.0_Chr4g0426061 Rosa chinensis HOM05D006827 ORTHO05D008725 3.2e-07 58.5 38 68.4
MD13G1149000 Malus domestica HOM05D006827 ORTHO05D008725 4.2e-07 58.2 29 82.8
HanXRQChr05g0148611 Helianthus annuus HOM05D006827 ORTHO05D008725 5.5e-07 57.8 35 71.4
TPR.G33906 Trifolium pratense HOM05D006827 ORTHO05D008725 5.5e-07 57.8 35 68.6
Duzib212G0426 Durio zibethinus HOM05D006827 ORTHO05D008725 7.2e-07 57.4 30 76.7
TAR633G1668 Trochodendron aralioides HOM05D006827 ORTHO05D023991 7.2e-07 57.4 58 55.2
unitig_88.g27700 Utricularia gibba HOM05D006827 ORTHO05D008725 7.2e-07 57.4 42 61.9
COL.COLO4_34569 Corchorus olitorius HOM05D001281 ORTHO05D001139 9.4e-07 57.0 30 80.0
Migut.N00027 Erythranthe guttata HOM05D006827 ORTHO05D008725 9.4e-07 57.0 42 59.5
FvH4_4g20660 Fragaria vesca HOM05D006827 ORTHO05D008725 9.4e-07 57.0 42 61.9
FAN12G3056 Fragaria x ananassa HOM05D006827 ORTHO05D008725 9.4e-07 57.0 42 61.9
Oeu014225.1 Olea europaea HOM05D006827 ORTHO05D008725 9.4e-07 57.0 64 59.4
BolC5t33670H Brassica oleracea HOM05D064981 ORTHO05D023991 1.2e-06 56.6 59 57.6
Sopen01g023660 Solanum pennellii HOM05D006827 ORTHO05D008725 1.2e-06 56.6 38 63.2
Ca_00959_v3 Cicer arietinum L. HOM05D006827 ORTHO05D008725 1.6e-06 56.2 35 65.7
Medtr2g033490 Medicago truncatula HOM05D006827 ORTHO05D008725 2.1e-06 55.8 38 63.2
Eucgr.B03980 Eucalyptus grandis HOM05D006827 ORTHO05D008725 2.7e-06 55.5 62 50.0
Lj3A834T69 Lonicera japonica HOM05D006827 ORTHO05D008725 2.7e-06 55.5 30 73.3
Hund11994 Selenicereus undatus HOM05D006827 ORTHO05D008725 6.1e-06 54.3 42 59.5
PGSC0003DMG400015968 Solanum tuberosum HOM05D006827 ORTHO05D008725 8.0e-06 53.9 65 53.8


User provided reference genes

Program Settings